HEADER TRANSPORT PROTEIN 13-DEC-14 4RY9 TITLE CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 VEIS_2079 FROM VERMINEPHROBACTER EISENIAE EF01-2, TARGET EFI-511009, TITLE 3 A COMPLEX WITH D-TALITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN/LACI TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERMINEPHROBACTER EISENIAE EF01-2; SOURCE 3 ORGANISM_TAXID: 391735; SOURCE 4 STRAIN: EF01-2; SOURCE 5 GENE: VEIS_2079; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SUGAR TRANSPORTER, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.CHAMALA,J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR, AUTHOR 3 B.HILLERICH,R.D.SIEDEL,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 4 28-FEB-24 4RY9 1 REMARK SEQADV REVDAT 3 24-JAN-18 4RY9 1 AUTHOR REVDAT 2 31-DEC-14 4RY9 1 AUTHOR REVDAT 1 24-DEC-14 4RY9 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA, JRNL AUTH 2 A.SCOTT GLENN,J.D.ATTONITO,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL, JRNL AUTH 3 L.L.MORISCO,S.R.WASSERMAN,B.HILLERICH,J.LOVE,K.L.WHALEN, JRNL AUTH 4 J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER SOLUTE BINDING JRNL TITL 2 PROTEIN VEIS_2079 FROM VERMINEPHROBACTER EISENIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 106509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7611 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4609 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4654 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6220 ; 1.687 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10705 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;38.603 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;12.469 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.410 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 746 ; 0.242 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5238 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2412 ; 2.087 ; 1.832 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2411 ; 2.087 ; 1.832 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3024 ; 2.155 ; 3.094 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3025 ; 2.154 ; 3.094 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2197 ; 7.193 ; 2.562 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2194 ; 7.199 ; 2.561 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3190 ; 6.016 ; 3.916 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5500 ; 4.754 ; 9.677 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5501 ; 4.753 ; 9.679 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9263 ; 2.957 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 162 ;24.359 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9600 ;11.595 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM D-TALITOL) RESERVOIR: 0.2 M POTASSIUM SULFATE, 25% PEG3350 REMARK 280 CRYOPROTECTION: RESERVOIR SOLUTION PLUS 25% (V/V) GLYCEROL VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.18800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.18800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 29 REMARK 465 SER A 30 REMARK 465 MET A 31 REMARK 465 GLN A 32 REMARK 465 THR A 33 REMARK 465 GLN B 29 REMARK 465 SER B 30 REMARK 465 MET B 31 REMARK 465 GLN B 32 REMARK 465 THR B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 302 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 250 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 123 -73.79 73.61 REMARK 500 ALA A 261 43.14 76.85 REMARK 500 SER B 46 30.09 -96.66 REMARK 500 ASP B 123 -74.49 74.15 REMARK 500 ALA B 261 43.19 79.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLZ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT B 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511009 RELATED DB: TARGETTRACK DBREF 4RY9 A 32 330 UNP A1WJM2 A1WJM2_VEREI 32 330 DBREF 4RY9 B 32 330 UNP A1WJM2 A1WJM2_VEREI 32 330 SEQADV 4RY9 GLN A 29 UNP A1WJM2 EXPRESSION TAG SEQADV 4RY9 SER A 30 UNP A1WJM2 EXPRESSION TAG SEQADV 4RY9 MET A 31 UNP A1WJM2 EXPRESSION TAG SEQADV 4RY9 GLN B 29 UNP A1WJM2 EXPRESSION TAG SEQADV 4RY9 SER B 30 UNP A1WJM2 EXPRESSION TAG SEQADV 4RY9 MET B 31 UNP A1WJM2 EXPRESSION TAG SEQRES 1 A 302 GLN SER MET GLN THR GLY ALA PHE LYS ILE GLY VAL SER SEQRES 2 A 302 MET LYS THR LEU SER ALA PRO TYR PHE ALA ALA GLN MET SEQRES 3 A 302 GLU ALA ALA LYS ALA ARG GLY LYS GLU LEU GLY TYR GLU SEQRES 4 A 302 VAL LEU ALA THR ASP ALA GLN GLY LYS LEU GLN LYS GLN SEQRES 5 A 302 ILE SER ASP VAL GLU ASP LEU VAL THR ARG GLY VAL LYS SEQRES 6 A 302 LEU LEU ILE ILE ASN PRO ALA ASP SER GLU GLY LEU VAL SEQRES 7 A 302 ASN ALA VAL ASN ASN ALA SER ALA ASN GLY VAL LYS VAL SEQRES 8 A 302 VAL VAL ILE ASP SER THR LEU ASN PRO ARG ALA ASN PHE SEQRES 9 A 302 VAL THR GLN VAL GLN SER SER ASN SER ILE ASN GLY ALA SEQRES 10 A 302 LEU VAL GLY HIS TRP VAL ILE GLU GLU VAL GLY ASN LYS SEQRES 11 A 302 SER LEU LYS ILE ALA LEU LEU SER GLY GLU LYS GLY ASN SEQRES 12 A 302 PRO VAL GLY GLN GLU ARG ARG LEU GLY VAL LEU SER GLY SEQRES 13 A 302 ILE ILE GLU ALA GLN LEU ARG LYS PHE GLY LYS ALA ASP SEQRES 14 A 302 LEU THR VAL VAL GLY GLN GLY TRP GLY HIS TRP ASN ASP SEQRES 15 A 302 GLU GLY GLY LEU LYS ALA MET GLU ASP LEU LEU VAL ALA SEQRES 16 A 302 ASN LYS ASP ILE ASN MET VAL LEU GLY GLU ASN ASP SER SEQRES 17 A 302 MET VAL LEU GLY ALA ARG ARG ALA ILE GLU SER ALA GLY SEQRES 18 A 302 ARG THR GLY ILE LEU LEU VAL ALA ALA ALA ASP ALA GLN SEQRES 19 A 302 LYS GLU ALA LEU ALA LEU ILE LYS GLN GLY LYS TYR GLY SEQRES 20 A 302 VAL THR GLY LEU ASN ASP PRO ALA LEU VAL ALA ARG THR SEQRES 21 A 302 ALA ILE ASP LEU GLY VAL LYS VAL VAL LYS GLY GLU VAL SEQRES 22 A 302 LYS ASP VAL PRO LYS GLN THR LEU THR THR PRO ALA ALA SEQRES 23 A 302 ILE THR LYS GLY ASN VAL ASP LYS PHE TYR ASN PRO LYS SEQRES 24 A 302 ALA VAL PHE SEQRES 1 B 302 GLN SER MET GLN THR GLY ALA PHE LYS ILE GLY VAL SER SEQRES 2 B 302 MET LYS THR LEU SER ALA PRO TYR PHE ALA ALA GLN MET SEQRES 3 B 302 GLU ALA ALA LYS ALA ARG GLY LYS GLU LEU GLY TYR GLU SEQRES 4 B 302 VAL LEU ALA THR ASP ALA GLN GLY LYS LEU GLN LYS GLN SEQRES 5 B 302 ILE SER ASP VAL GLU ASP LEU VAL THR ARG GLY VAL LYS SEQRES 6 B 302 LEU LEU ILE ILE ASN PRO ALA ASP SER GLU GLY LEU VAL SEQRES 7 B 302 ASN ALA VAL ASN ASN ALA SER ALA ASN GLY VAL LYS VAL SEQRES 8 B 302 VAL VAL ILE ASP SER THR LEU ASN PRO ARG ALA ASN PHE SEQRES 9 B 302 VAL THR GLN VAL GLN SER SER ASN SER ILE ASN GLY ALA SEQRES 10 B 302 LEU VAL GLY HIS TRP VAL ILE GLU GLU VAL GLY ASN LYS SEQRES 11 B 302 SER LEU LYS ILE ALA LEU LEU SER GLY GLU LYS GLY ASN SEQRES 12 B 302 PRO VAL GLY GLN GLU ARG ARG LEU GLY VAL LEU SER GLY SEQRES 13 B 302 ILE ILE GLU ALA GLN LEU ARG LYS PHE GLY LYS ALA ASP SEQRES 14 B 302 LEU THR VAL VAL GLY GLN GLY TRP GLY HIS TRP ASN ASP SEQRES 15 B 302 GLU GLY GLY LEU LYS ALA MET GLU ASP LEU LEU VAL ALA SEQRES 16 B 302 ASN LYS ASP ILE ASN MET VAL LEU GLY GLU ASN ASP SER SEQRES 17 B 302 MET VAL LEU GLY ALA ARG ARG ALA ILE GLU SER ALA GLY SEQRES 18 B 302 ARG THR GLY ILE LEU LEU VAL ALA ALA ALA ASP ALA GLN SEQRES 19 B 302 LYS GLU ALA LEU ALA LEU ILE LYS GLN GLY LYS TYR GLY SEQRES 20 B 302 VAL THR GLY LEU ASN ASP PRO ALA LEU VAL ALA ARG THR SEQRES 21 B 302 ALA ILE ASP LEU GLY VAL LYS VAL VAL LYS GLY GLU VAL SEQRES 22 B 302 LYS ASP VAL PRO LYS GLN THR LEU THR THR PRO ALA ALA SEQRES 23 B 302 ILE THR LYS GLY ASN VAL ASP LYS PHE TYR ASN PRO LYS SEQRES 24 B 302 ALA VAL PHE HET TLZ A 401 12 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET TLZ B 401 12 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET GOL B 408 6 HET GOL B 409 6 HET BCT B 410 4 HETNAM TLZ D-ALTRITOL HETNAM GOL GLYCEROL HETNAM BCT BICARBONATE ION HETSYN TLZ D-TALITOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TLZ 2(C6 H14 O6) FORMUL 4 GOL 14(C3 H8 O3) FORMUL 19 BCT C H O3 1- FORMUL 20 HOH *537(H2 O) HELIX 1 1 ALA A 47 LEU A 64 1 18 HELIX 2 2 LYS A 76 ARG A 90 1 15 HELIX 3 3 LEU A 105 ASN A 115 1 11 HELIX 4 4 SER A 139 GLY A 156 1 18 HELIX 5 5 ASN A 171 GLY A 194 1 24 HELIX 6 6 ASN A 209 ASN A 224 1 16 HELIX 7 7 ASN A 234 GLY A 249 1 16 HELIX 8 8 GLN A 262 GLN A 271 1 10 HELIX 9 9 ASP A 281 LYS A 298 1 18 HELIX 10 10 ASN A 319 TYR A 324 1 6 HELIX 11 11 ALA B 47 LEU B 64 1 18 HELIX 12 12 LYS B 76 ARG B 90 1 15 HELIX 13 13 LEU B 105 ASN B 115 1 11 HELIX 14 14 SER B 139 GLY B 156 1 18 HELIX 15 15 ASN B 171 GLY B 194 1 24 HELIX 16 16 ASN B 209 ASN B 224 1 16 HELIX 17 17 ASN B 234 GLY B 249 1 16 HELIX 18 18 GLN B 262 GLN B 271 1 10 HELIX 19 19 ASP B 281 LYS B 298 1 18 HELIX 20 20 ASN B 319 TYR B 324 1 6 SHEET 1 A 6 GLU A 67 ASP A 72 0 SHEET 2 A 6 LYS A 37 MET A 42 1 N ILE A 38 O LEU A 69 SHEET 3 A 6 VAL A 92 ASN A 98 1 O ILE A 96 N GLY A 39 SHEET 4 A 6 LYS A 118 ILE A 122 1 O ILE A 122 N ILE A 97 SHEET 5 A 6 THR A 134 GLN A 137 1 O VAL A 136 N VAL A 121 SHEET 6 A 6 GLN A 307 LEU A 309 1 O THR A 308 N GLN A 135 SHEET 1 B 4 THR A 199 TRP A 205 0 SHEET 2 B 4 LYS A 161 SER A 166 1 N SER A 166 O GLY A 204 SHEET 3 B 4 MET A 229 GLY A 232 1 O LEU A 231 N LEU A 165 SHEET 4 B 4 LEU A 254 ALA A 257 1 O LEU A 254 N VAL A 230 SHEET 1 C 2 THR A 277 GLY A 278 0 SHEET 2 C 2 ALA A 314 ILE A 315 -1 O ILE A 315 N THR A 277 SHEET 1 D 6 GLU B 67 ASP B 72 0 SHEET 2 D 6 LYS B 37 MET B 42 1 N ILE B 38 O LEU B 69 SHEET 3 D 6 VAL B 92 ASN B 98 1 O ILE B 96 N GLY B 39 SHEET 4 D 6 LYS B 118 ILE B 122 1 O ILE B 122 N ILE B 97 SHEET 5 D 6 THR B 134 GLN B 137 1 O VAL B 136 N VAL B 121 SHEET 6 D 6 GLN B 307 LEU B 309 1 O THR B 308 N GLN B 135 SHEET 1 E 4 THR B 199 TRP B 205 0 SHEET 2 E 4 LYS B 161 SER B 166 1 N SER B 166 O GLY B 204 SHEET 3 E 4 MET B 229 GLY B 232 1 O LEU B 231 N LEU B 165 SHEET 4 E 4 LEU B 254 ALA B 257 1 O LEU B 254 N VAL B 230 SHEET 1 F 2 THR B 277 GLY B 278 0 SHEET 2 F 2 ALA B 314 ILE B 315 -1 O ILE B 315 N THR B 277 CISPEP 1 ALA A 259 ASP A 260 0 5.46 CISPEP 2 ALA B 259 ASP B 260 0 4.37 SITE 1 AC1 13 LYS A 43 TYR A 49 PHE A 50 ASP A 123 SITE 2 AC1 13 SER A 124 ASN A 171 ARG A 177 TRP A 208 SITE 3 AC1 13 ASN A 234 ASP A 260 ASN A 280 HOH A 511 SITE 4 AC1 13 HOH A 519 SITE 1 AC2 8 GLU A 103 ASN A 127 ARG A 129 PRO A 172 SITE 2 AC2 8 HOH A 584 HOH A 629 HOH A 689 ASN B 107 SITE 1 AC3 7 VAL A 88 GLY A 91 VAL A 92 ASN A 115 SITE 2 AC3 7 HOH A 652 ASN B 319 LYS B 322 SITE 1 AC4 9 ASN A 157 LYS A 158 SER A 159 GLN A 189 SITE 2 AC4 9 PHE A 193 LYS A 195 HOH A 514 HOH A 585 SITE 3 AC4 9 HOH A 712 SITE 1 AC5 5 VAL A 222 ALA A 223 LYS B 322 TYR B 324 SITE 2 AC5 5 ASN B 325 SITE 1 AC6 8 ASP A 260 ALA A 261 ASP A 281 PHE A 323 SITE 2 AC6 8 HOH A 526 HOH A 638 HOH A 684 HOH A 686 SITE 1 AC7 7 TRP A 150 GLU A 153 GLU A 154 HOH A 575 SITE 2 AC7 7 HOH A 630 ARG B 90 HOH B 707 SITE 1 AC8 13 LYS B 43 TYR B 49 PHE B 50 ASP B 123 SITE 2 AC8 13 SER B 124 ASN B 171 ARG B 177 TRP B 208 SITE 3 AC8 13 ASN B 234 ASP B 260 ASN B 280 HOH B 512 SITE 4 AC8 13 HOH B 524 SITE 1 AC9 7 ASN A 107 GLU B 103 ASN B 127 ARG B 129 SITE 2 AC9 7 PRO B 172 HOH B 600 HOH B 650 SITE 1 BC1 9 ASN B 157 LYS B 158 SER B 159 GLN B 189 SITE 2 BC1 9 PHE B 193 LYS B 195 HOH B 513 HOH B 575 SITE 3 BC1 9 HOH B 685 SITE 1 BC2 5 LYS A 322 TYR A 324 ASN A 325 VAL B 222 SITE 2 BC2 5 ALA B 223 SITE 1 BC3 9 ASP B 260 ALA B 261 ASN B 280 ASP B 281 SITE 2 BC3 9 PHE B 323 HOH B 521 HOH B 656 HOH B 668 SITE 3 BC3 9 HOH B 727 SITE 1 BC4 6 ARG B 60 ARG B 287 THR B 288 ASP B 291 SITE 2 BC4 6 HOH B 565 HOH B 746 SITE 1 BC5 7 THR B 125 GLN B 135 GLN B 137 GLU B 176 SITE 2 BC5 7 GLN B 307 HOH B 523 HOH B 676 SITE 1 BC6 8 ARG A 90 HOH A 750 HOH A 751 TRP B 150 SITE 2 BC6 8 GLU B 153 GLU B 154 HOH B 580 HOH B 620 SITE 1 BC7 8 VAL A 88 ASN A 111 ASN A 115 HOH A 631 SITE 2 BC7 8 LEU B 146 ALA B 313 ALA B 314 ASN B 319 SITE 1 BC8 10 PRO B 99 ASP B 101 SER B 102 THR B 125 SITE 2 BC8 10 ASN B 171 PRO B 172 HOH B 512 HOH B 589 SITE 3 BC8 10 HOH B 673 HOH B 726 CRYST1 68.650 68.635 120.376 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008307 0.00000