data_4RYK # _entry.id 4RYK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RYK RCSB RCSB087955 WWPDB D_1000087955 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC106808 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RYK _pdbx_database_status.recvd_initial_deposition_date 2014-12-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Wawrzak, Z.' 2 'Minasov, G.' 3 'Kiryukhina, O.' 4 'Jedrzejczak, R.' 5 'Joachimiak, A.' 6 'Anderson, W.F.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure of a putative transcriptional regulator from Listeria monocytogenes EGD-e' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippova, E.V.' 1 ? primary 'Wawrzak, Z.' 2 ? primary 'Minasov, G.' 3 ? primary 'Kiryukhina, O.' 4 ? primary 'Jedrzejczak, R.' 5 ? primary 'Joachimiak, A.' 6 ? primary 'Anderson, W.F.' 7 ? # _cell.entry_id 4RYK _cell.length_a 86.310 _cell.length_b 103.930 _cell.length_c 112.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RYK _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lmo0325 protein' 36843.863 1 ? ? ? ? 2 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'L(+)-TARTARIC ACID' 150.087 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name sucrose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HHHHHH(MSE)GSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRI(MSE)VPLDEFFFIYR DFSSTEDDSFWIDFVELSGKNDVVG(MSE)QALLDKITLERTEQSEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKI IHDYLWK(MSE)QTWTLEEVRIFSNGISFFEEEVQIHFYQI(MSE)LKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKI NYANLVLEKLKEASETSGSFNSAFYRIVANYYQGAIW(MSE)KEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQF LEKENIQVED ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHMGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDD SFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWT LEEVRIFSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSF NSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC106808 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MSE n 1 8 GLY n 1 9 SER n 1 10 TYR n 1 11 GLY n 1 12 GLU n 1 13 LEU n 1 14 ILE n 1 15 ARG n 1 16 GLU n 1 17 ILE n 1 18 ARG n 1 19 LEU n 1 20 SER n 1 21 LYS n 1 22 GLY n 1 23 LEU n 1 24 THR n 1 25 GLN n 1 26 LYS n 1 27 GLU n 1 28 VAL n 1 29 TYR n 1 30 THR n 1 31 GLY n 1 32 ILE n 1 33 ILE n 1 34 SER n 1 35 ARG n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ILE n 1 40 GLY n 1 41 PHE n 1 42 GLU n 1 43 LYS n 1 44 GLY n 1 45 LYS n 1 46 HIS n 1 47 GLU n 1 48 ILE n 1 49 THR n 1 50 LEU n 1 51 SER n 1 52 LEU n 1 53 PHE n 1 54 GLU n 1 55 GLU n 1 56 ILE n 1 57 LEU n 1 58 LYS n 1 59 ARG n 1 60 ILE n 1 61 MSE n 1 62 VAL n 1 63 PRO n 1 64 LEU n 1 65 ASP n 1 66 GLU n 1 67 PHE n 1 68 PHE n 1 69 PHE n 1 70 ILE n 1 71 TYR n 1 72 ARG n 1 73 ASP n 1 74 PHE n 1 75 SER n 1 76 SER n 1 77 THR n 1 78 GLU n 1 79 ASP n 1 80 ASP n 1 81 SER n 1 82 PHE n 1 83 TRP n 1 84 ILE n 1 85 ASP n 1 86 PHE n 1 87 VAL n 1 88 GLU n 1 89 LEU n 1 90 SER n 1 91 GLY n 1 92 LYS n 1 93 ASN n 1 94 ASP n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 MSE n 1 99 GLN n 1 100 ALA n 1 101 LEU n 1 102 LEU n 1 103 ASP n 1 104 LYS n 1 105 ILE n 1 106 THR n 1 107 LEU n 1 108 GLU n 1 109 ARG n 1 110 THR n 1 111 GLU n 1 112 GLN n 1 113 SER n 1 114 GLU n 1 115 VAL n 1 116 ARG n 1 117 LYS n 1 118 ALA n 1 119 ILE n 1 120 LEU n 1 121 HIS n 1 122 THR n 1 123 ARG n 1 124 ILE n 1 125 GLN n 1 126 THR n 1 127 ILE n 1 128 ASN n 1 129 HIS n 1 130 TYR n 1 131 LEU n 1 132 ARG n 1 133 THR n 1 134 ASN n 1 135 VAL n 1 136 PHE n 1 137 ASP n 1 138 GLU n 1 139 SER n 1 140 ASN n 1 141 ILE n 1 142 SER n 1 143 ASP n 1 144 GLU n 1 145 TYR n 1 146 LYS n 1 147 LYS n 1 148 ILE n 1 149 ILE n 1 150 HIS n 1 151 ASP n 1 152 TYR n 1 153 LEU n 1 154 TRP n 1 155 LYS n 1 156 MSE n 1 157 GLN n 1 158 THR n 1 159 TRP n 1 160 THR n 1 161 LEU n 1 162 GLU n 1 163 GLU n 1 164 VAL n 1 165 ARG n 1 166 ILE n 1 167 PHE n 1 168 SER n 1 169 ASN n 1 170 GLY n 1 171 ILE n 1 172 SER n 1 173 PHE n 1 174 PHE n 1 175 GLU n 1 176 GLU n 1 177 GLU n 1 178 VAL n 1 179 GLN n 1 180 ILE n 1 181 HIS n 1 182 PHE n 1 183 TYR n 1 184 GLN n 1 185 ILE n 1 186 MSE n 1 187 LEU n 1 188 LYS n 1 189 SER n 1 190 TYR n 1 191 GLU n 1 192 LYS n 1 193 TYR n 1 194 ARG n 1 195 TYR n 1 196 TYR n 1 197 ASP n 1 198 ARG n 1 199 GLY n 1 200 ARG n 1 201 LEU n 1 202 LEU n 1 203 PHE n 1 204 CYS n 1 205 HIS n 1 206 LEU n 1 207 PHE n 1 208 ALA n 1 209 ASN n 1 210 LEU n 1 211 THR n 1 212 ASP n 1 213 GLU n 1 214 LEU n 1 215 ILE n 1 216 ILE n 1 217 GLN n 1 218 ASN n 1 219 LYS n 1 220 ILE n 1 221 ASN n 1 222 TYR n 1 223 ALA n 1 224 ASN n 1 225 LEU n 1 226 VAL n 1 227 LEU n 1 228 GLU n 1 229 LYS n 1 230 LEU n 1 231 LYS n 1 232 GLU n 1 233 ALA n 1 234 SER n 1 235 GLU n 1 236 THR n 1 237 SER n 1 238 GLY n 1 239 SER n 1 240 PHE n 1 241 ASN n 1 242 SER n 1 243 ALA n 1 244 PHE n 1 245 TYR n 1 246 ARG n 1 247 ILE n 1 248 VAL n 1 249 ALA n 1 250 ASN n 1 251 TYR n 1 252 TYR n 1 253 GLN n 1 254 GLY n 1 255 ALA n 1 256 ILE n 1 257 TRP n 1 258 MSE n 1 259 LYS n 1 260 GLU n 1 261 GLY n 1 262 GLU n 1 263 VAL n 1 264 GLU n 1 265 LYS n 1 266 GLY n 1 267 TYR n 1 268 ARG n 1 269 GLN n 1 270 ALA n 1 271 LYS n 1 272 ARG n 1 273 ALA n 1 274 ILE n 1 275 GLN n 1 276 THR n 1 277 TRP n 1 278 LYS n 1 279 GLU n 1 280 LEU n 1 281 HIS n 1 282 TYR n 1 283 GLU n 1 284 ALA n 1 285 ILE n 1 286 ALA n 1 287 ASP n 1 288 LEU n 1 289 TYR n 1 290 SER n 1 291 VAL n 1 292 VAL n 1 293 LEU n 1 294 LYS n 1 295 GLN n 1 296 PHE n 1 297 LEU n 1 298 GLU n 1 299 LYS n 1 300 GLU n 1 301 ASN n 1 302 ILE n 1 303 GLN n 1 304 VAL n 1 305 GLU n 1 306 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lmo0325 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes EGD-e' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG87 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8YA39_LISMO _struct_ref.pdbx_db_accession Q8YA39 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDF VELSGKNDVVGMQALLDKITLERTEQSEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYR IVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RYK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 306 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8YA39 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 300 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 300 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RYK HIS A 1 ? UNP Q8YA39 ? ? 'expression tag' -5 1 1 4RYK HIS A 2 ? UNP Q8YA39 ? ? 'expression tag' -4 2 1 4RYK HIS A 3 ? UNP Q8YA39 ? ? 'expression tag' -3 3 1 4RYK HIS A 4 ? UNP Q8YA39 ? ? 'expression tag' -2 4 1 4RYK HIS A 5 ? UNP Q8YA39 ? ? 'expression tag' -1 5 1 4RYK HIS A 6 ? UNP Q8YA39 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TLA non-polymer . 'L(+)-TARTARIC ACID' ? 'C4 H6 O6' 150.087 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RYK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_percent_sol 64.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.1 M Ammonium Tartrate, 25 % Sucrose, 10 % PEG 400, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details 'beryllium lenses' _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2014-07-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.09 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 27.1 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4RYK _reflns.B_iso_Wilson_estimate 37.9 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 30178 _reflns.d_resolution_low 56.4 _reflns.pdbx_redundancy 7.4 _reflns.number_obs 30178 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.09 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.658 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2187 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 5.0 _refine.overall_SU_B 8.317 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4RYK _refine.aniso_B[2][3] 0.00 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.104 _refine.aniso_B[1][3] -0.00 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.aniso_B[3][3] -2.66 _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] 3.22 _refine.pdbx_overall_ESU_R 0.137 _refine.ls_R_factor_obs 0.16940 _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_method_to_determine_struct SAD _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.ls_number_reflns_R_free 1514 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 99.29 _refine.ls_R_factor_R_work 0.16783 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.09 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 54.718 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] -0.56 _refine.B_iso_max ? _refine.pdbx_ls_sigma_I ? _refine.ls_d_res_low 56.40 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details MASK _refine.aniso_B[1][2] 0.00 _refine.ls_R_factor_R_free 0.19919 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 28664 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_number_reflns_all 28664 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2483 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 2648 _refine_hist.d_res_high 2.09 _refine_hist.d_res_low 56.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.019 ? 2574 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 2442 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.647 1.957 ? 3461 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.851 3.000 ? 5608 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.656 5.000 ? 294 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.971 23.778 ? 135 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.250 15.000 ? 465 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19.215 15.000 ? 17 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.091 0.200 ? 375 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 2847 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 635 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 2.753 3.606 ? 1182 ? 'X-RAY DIFFRACTION' r_mcbond_other 2.744 3.605 ? 1181 ? 'X-RAY DIFFRACTION' r_mcangle_it 4.098 5.379 ? 1474 ? 'X-RAY DIFFRACTION' r_mcangle_other 4.101 5.381 ? 1475 ? 'X-RAY DIFFRACTION' r_scbond_it 4.190 4.189 ? 1390 ? 'X-RAY DIFFRACTION' r_scbond_other 4.190 4.189 ? 1390 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 6.384 6.100 ? 1988 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 8.513 30.255 ? 3185 ? 'X-RAY DIFFRACTION' r_long_range_B_other 8.512 30.267 ? 3186 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.09 _refine_ls_shell.d_res_low 2.14 _refine_ls_shell.number_reflns_R_work 2089 _refine_ls_shell.R_factor_R_work 0.271 _refine_ls_shell.percent_reflns_obs 98.07 _refine_ls_shell.R_factor_R_free 0.270 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4RYK _struct.title 'Crystal structure of a putative transcriptional regulator from Listeria monocytogenes EGD-e' _struct.pdbx_descriptor 'Lmo0325 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, DNA BINDING PROTEIN' _struct_keywords.entry_id 4RYK _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? LYS A 21 ? TYR A 4 LYS A 15 1 ? 12 HELX_P HELX_P2 2 THR A 24 ? THR A 30 ? THR A 18 THR A 24 1 ? 7 HELX_P HELX_P3 3 SER A 34 ? LYS A 43 ? SER A 28 LYS A 37 1 ? 10 HELX_P HELX_P4 4 THR A 49 ? MSE A 61 ? THR A 43 MSE A 55 1 ? 13 HELX_P HELX_P5 5 PRO A 63 ? ARG A 72 ? PRO A 57 ARG A 66 1 ? 10 HELX_P HELX_P6 6 SER A 81 ? LYS A 92 ? SER A 75 LYS A 86 1 ? 12 HELX_P HELX_P7 7 ASP A 94 ? ARG A 109 ? ASP A 88 ARG A 103 1 ? 16 HELX_P HELX_P8 8 GLN A 112 ? THR A 133 ? GLN A 106 THR A 127 1 ? 22 HELX_P HELX_P9 9 SER A 142 ? TRP A 154 ? SER A 136 TRP A 148 1 ? 13 HELX_P HELX_P10 10 THR A 160 ? ILE A 171 ? THR A 154 ILE A 165 1 ? 12 HELX_P HELX_P11 11 SER A 172 ? PHE A 174 ? SER A 166 PHE A 168 5 ? 3 HELX_P HELX_P12 12 GLU A 175 ? ARG A 194 ? GLU A 169 ARG A 188 1 ? 20 HELX_P HELX_P13 13 TYR A 196 ? GLN A 217 ? TYR A 190 GLN A 211 1 ? 22 HELX_P HELX_P14 14 LYS A 219 ? THR A 236 ? LYS A 213 THR A 230 1 ? 18 HELX_P HELX_P15 15 SER A 237 ? ASN A 241 ? SER A 231 ASN A 235 5 ? 5 HELX_P HELX_P16 16 SER A 242 ? GLU A 260 ? SER A 236 GLU A 254 1 ? 19 HELX_P HELX_P17 17 GLU A 262 ? LEU A 280 ? GLU A 256 LEU A 274 1 ? 19 HELX_P HELX_P18 18 TYR A 282 ? ASN A 301 ? TYR A 276 ASN A 295 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 60 C ? ? ? 1_555 A MSE 61 N ? ? A ILE 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale2 covale both ? A MSE 61 C ? ? ? 1_555 A VAL 62 N ? ? A MSE 55 A VAL 56 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale3 covale both ? A GLY 97 C ? ? ? 1_555 A MSE 98 N ? ? A GLY 91 A MSE 92 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 98 C ? ? ? 1_555 A GLN 99 N ? ? A MSE 92 A GLN 93 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A LYS 155 C ? ? ? 1_555 A MSE 156 N ? ? A LYS 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 156 C ? ? ? 1_555 A GLN 157 N ? ? A MSE 150 A GLN 151 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale7 covale both ? A ILE 185 C ? ? ? 1_555 A MSE 186 N ? ? A ILE 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale8 covale both ? A MSE 186 C ? ? ? 1_555 A LEU 187 N ? ? A MSE 180 A LEU 181 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale9 covale both ? A TRP 257 C ? ? ? 1_555 A MSE 258 N ? ? A TRP 251 A MSE 252 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A MSE 258 C ? ? ? 1_555 A LYS 259 N ? ? A MSE 252 A LYS 253 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale11 covale both ? B GLC . C1 ? ? ? 1_555 B FRU . O2 ? ? B GLC 1 B FRU 2 1_555 ? ? ? ? ? ? ? 1.425 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4RYK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RYK _atom_sites.fract_transf_matrix[1][1] 0.011586 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008864 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 -2 HIS HIS A . n A 1 5 HIS 5 -1 -1 HIS HIS A . n A 1 6 HIS 6 0 0 HIS HIS A . n A 1 7 MSE 7 1 ? ? ? A . n A 1 8 GLY 8 2 ? ? ? A . n A 1 9 SER 9 3 3 SER SER A . n A 1 10 TYR 10 4 4 TYR TYR A . n A 1 11 GLY 11 5 5 GLY GLY A . n A 1 12 GLU 12 6 6 GLU GLU A . n A 1 13 LEU 13 7 7 LEU LEU A . n A 1 14 ILE 14 8 8 ILE ILE A . n A 1 15 ARG 15 9 9 ARG ARG A . n A 1 16 GLU 16 10 10 GLU GLU A . n A 1 17 ILE 17 11 11 ILE ILE A . n A 1 18 ARG 18 12 12 ARG ARG A . n A 1 19 LEU 19 13 13 LEU LEU A . n A 1 20 SER 20 14 14 SER SER A . n A 1 21 LYS 21 15 15 LYS LYS A . n A 1 22 GLY 22 16 16 GLY GLY A . n A 1 23 LEU 23 17 17 LEU LEU A . n A 1 24 THR 24 18 18 THR THR A . n A 1 25 GLN 25 19 19 GLN GLN A . n A 1 26 LYS 26 20 20 LYS LYS A . n A 1 27 GLU 27 21 21 GLU GLU A . n A 1 28 VAL 28 22 22 VAL VAL A . n A 1 29 TYR 29 23 23 TYR TYR A . n A 1 30 THR 30 24 24 THR THR A . n A 1 31 GLY 31 25 25 GLY GLY A . n A 1 32 ILE 32 26 26 ILE ILE A . n A 1 33 ILE 33 27 27 ILE ILE A . n A 1 34 SER 34 28 28 SER SER A . n A 1 35 ARG 35 29 29 ARG ARG A . n A 1 36 SER 36 30 30 SER SER A . n A 1 37 TYR 37 31 31 TYR TYR A . n A 1 38 ALA 38 32 32 ALA ALA A . n A 1 39 ILE 39 33 33 ILE ILE A . n A 1 40 GLY 40 34 34 GLY GLY A . n A 1 41 PHE 41 35 35 PHE PHE A . n A 1 42 GLU 42 36 36 GLU GLU A . n A 1 43 LYS 43 37 37 LYS LYS A . n A 1 44 GLY 44 38 38 GLY GLY A . n A 1 45 LYS 45 39 39 LYS LYS A . n A 1 46 HIS 46 40 40 HIS HIS A . n A 1 47 GLU 47 41 41 GLU GLU A . n A 1 48 ILE 48 42 42 ILE ILE A . n A 1 49 THR 49 43 43 THR THR A . n A 1 50 LEU 50 44 44 LEU LEU A . n A 1 51 SER 51 45 45 SER SER A . n A 1 52 LEU 52 46 46 LEU LEU A . n A 1 53 PHE 53 47 47 PHE PHE A . n A 1 54 GLU 54 48 48 GLU GLU A . n A 1 55 GLU 55 49 49 GLU GLU A . n A 1 56 ILE 56 50 50 ILE ILE A . n A 1 57 LEU 57 51 51 LEU LEU A . n A 1 58 LYS 58 52 52 LYS LYS A . n A 1 59 ARG 59 53 53 ARG ARG A . n A 1 60 ILE 60 54 54 ILE ILE A . n A 1 61 MSE 61 55 55 MSE MSE A . n A 1 62 VAL 62 56 56 VAL VAL A . n A 1 63 PRO 63 57 57 PRO PRO A . n A 1 64 LEU 64 58 58 LEU LEU A . n A 1 65 ASP 65 59 59 ASP ASP A . n A 1 66 GLU 66 60 60 GLU GLU A . n A 1 67 PHE 67 61 61 PHE PHE A . n A 1 68 PHE 68 62 62 PHE PHE A . n A 1 69 PHE 69 63 63 PHE PHE A . n A 1 70 ILE 70 64 64 ILE ILE A . n A 1 71 TYR 71 65 65 TYR TYR A . n A 1 72 ARG 72 66 66 ARG ARG A . n A 1 73 ASP 73 67 67 ASP ASP A . n A 1 74 PHE 74 68 68 PHE PHE A . n A 1 75 SER 75 69 69 SER SER A . n A 1 76 SER 76 70 70 SER SER A . n A 1 77 THR 77 71 71 THR THR A . n A 1 78 GLU 78 72 72 GLU GLU A . n A 1 79 ASP 79 73 73 ASP ASP A . n A 1 80 ASP 80 74 74 ASP ASP A . n A 1 81 SER 81 75 75 SER SER A . n A 1 82 PHE 82 76 76 PHE PHE A . n A 1 83 TRP 83 77 77 TRP TRP A . n A 1 84 ILE 84 78 78 ILE ILE A . n A 1 85 ASP 85 79 79 ASP ASP A . n A 1 86 PHE 86 80 80 PHE PHE A . n A 1 87 VAL 87 81 81 VAL VAL A . n A 1 88 GLU 88 82 82 GLU GLU A . n A 1 89 LEU 89 83 83 LEU LEU A . n A 1 90 SER 90 84 84 SER SER A . n A 1 91 GLY 91 85 85 GLY GLY A . n A 1 92 LYS 92 86 86 LYS LYS A . n A 1 93 ASN 93 87 87 ASN ASN A . n A 1 94 ASP 94 88 88 ASP ASP A . n A 1 95 VAL 95 89 89 VAL VAL A . n A 1 96 VAL 96 90 90 VAL VAL A . n A 1 97 GLY 97 91 91 GLY GLY A . n A 1 98 MSE 98 92 92 MSE MSE A . n A 1 99 GLN 99 93 93 GLN GLN A . n A 1 100 ALA 100 94 94 ALA ALA A . n A 1 101 LEU 101 95 95 LEU LEU A . n A 1 102 LEU 102 96 96 LEU LEU A . n A 1 103 ASP 103 97 97 ASP ASP A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 ILE 105 99 99 ILE ILE A . n A 1 106 THR 106 100 100 THR THR A . n A 1 107 LEU 107 101 101 LEU LEU A . n A 1 108 GLU 108 102 102 GLU GLU A . n A 1 109 ARG 109 103 103 ARG ARG A . n A 1 110 THR 110 104 104 THR THR A . n A 1 111 GLU 111 105 105 GLU GLU A . n A 1 112 GLN 112 106 106 GLN GLN A . n A 1 113 SER 113 107 107 SER SER A . n A 1 114 GLU 114 108 108 GLU GLU A . n A 1 115 VAL 115 109 109 VAL VAL A . n A 1 116 ARG 116 110 110 ARG ARG A . n A 1 117 LYS 117 111 111 LYS LYS A . n A 1 118 ALA 118 112 112 ALA ALA A . n A 1 119 ILE 119 113 113 ILE ILE A . n A 1 120 LEU 120 114 114 LEU LEU A . n A 1 121 HIS 121 115 115 HIS HIS A . n A 1 122 THR 122 116 116 THR THR A . n A 1 123 ARG 123 117 117 ARG ARG A . n A 1 124 ILE 124 118 118 ILE ILE A . n A 1 125 GLN 125 119 119 GLN GLN A . n A 1 126 THR 126 120 120 THR THR A . n A 1 127 ILE 127 121 121 ILE ILE A . n A 1 128 ASN 128 122 122 ASN ASN A . n A 1 129 HIS 129 123 123 HIS HIS A . n A 1 130 TYR 130 124 124 TYR TYR A . n A 1 131 LEU 131 125 125 LEU LEU A . n A 1 132 ARG 132 126 126 ARG ARG A . n A 1 133 THR 133 127 127 THR THR A . n A 1 134 ASN 134 128 128 ASN ASN A . n A 1 135 VAL 135 129 129 VAL VAL A . n A 1 136 PHE 136 130 ? ? ? A . n A 1 137 ASP 137 131 ? ? ? A . n A 1 138 GLU 138 132 ? ? ? A . n A 1 139 SER 139 133 133 SER SER A . n A 1 140 ASN 140 134 134 ASN ASN A . n A 1 141 ILE 141 135 135 ILE ILE A . n A 1 142 SER 142 136 136 SER SER A . n A 1 143 ASP 143 137 137 ASP ASP A . n A 1 144 GLU 144 138 138 GLU GLU A . n A 1 145 TYR 145 139 139 TYR TYR A . n A 1 146 LYS 146 140 140 LYS LYS A . n A 1 147 LYS 147 141 141 LYS LYS A . n A 1 148 ILE 148 142 142 ILE ILE A . n A 1 149 ILE 149 143 143 ILE ILE A . n A 1 150 HIS 150 144 144 HIS HIS A . n A 1 151 ASP 151 145 145 ASP ASP A . n A 1 152 TYR 152 146 146 TYR TYR A . n A 1 153 LEU 153 147 147 LEU LEU A . n A 1 154 TRP 154 148 148 TRP TRP A . n A 1 155 LYS 155 149 149 LYS LYS A . n A 1 156 MSE 156 150 150 MSE MSE A . n A 1 157 GLN 157 151 151 GLN GLN A . n A 1 158 THR 158 152 152 THR THR A . n A 1 159 TRP 159 153 153 TRP TRP A . n A 1 160 THR 160 154 154 THR THR A . n A 1 161 LEU 161 155 155 LEU LEU A . n A 1 162 GLU 162 156 156 GLU GLU A . n A 1 163 GLU 163 157 157 GLU GLU A . n A 1 164 VAL 164 158 158 VAL VAL A . n A 1 165 ARG 165 159 159 ARG ARG A . n A 1 166 ILE 166 160 160 ILE ILE A . n A 1 167 PHE 167 161 161 PHE PHE A . n A 1 168 SER 168 162 162 SER SER A . n A 1 169 ASN 169 163 163 ASN ASN A . n A 1 170 GLY 170 164 164 GLY GLY A . n A 1 171 ILE 171 165 165 ILE ILE A . n A 1 172 SER 172 166 166 SER SER A . n A 1 173 PHE 173 167 167 PHE PHE A . n A 1 174 PHE 174 168 168 PHE PHE A . n A 1 175 GLU 175 169 169 GLU GLU A . n A 1 176 GLU 176 170 170 GLU GLU A . n A 1 177 GLU 177 171 171 GLU GLU A . n A 1 178 VAL 178 172 172 VAL VAL A . n A 1 179 GLN 179 173 173 GLN GLN A . n A 1 180 ILE 180 174 174 ILE ILE A . n A 1 181 HIS 181 175 175 HIS HIS A . n A 1 182 PHE 182 176 176 PHE PHE A . n A 1 183 TYR 183 177 177 TYR TYR A . n A 1 184 GLN 184 178 178 GLN GLN A . n A 1 185 ILE 185 179 179 ILE ILE A . n A 1 186 MSE 186 180 180 MSE MSE A . n A 1 187 LEU 187 181 181 LEU LEU A . n A 1 188 LYS 188 182 182 LYS LYS A . n A 1 189 SER 189 183 183 SER SER A . n A 1 190 TYR 190 184 184 TYR TYR A . n A 1 191 GLU 191 185 185 GLU GLU A . n A 1 192 LYS 192 186 186 LYS LYS A . n A 1 193 TYR 193 187 187 TYR TYR A . n A 1 194 ARG 194 188 188 ARG ARG A . n A 1 195 TYR 195 189 189 TYR TYR A . n A 1 196 TYR 196 190 190 TYR TYR A . n A 1 197 ASP 197 191 191 ASP ASP A . n A 1 198 ARG 198 192 192 ARG ARG A . n A 1 199 GLY 199 193 193 GLY GLY A . n A 1 200 ARG 200 194 194 ARG ARG A . n A 1 201 LEU 201 195 195 LEU LEU A . n A 1 202 LEU 202 196 196 LEU LEU A . n A 1 203 PHE 203 197 197 PHE PHE A . n A 1 204 CYS 204 198 198 CYS CYS A . n A 1 205 HIS 205 199 199 HIS HIS A . n A 1 206 LEU 206 200 200 LEU LEU A . n A 1 207 PHE 207 201 201 PHE PHE A . n A 1 208 ALA 208 202 202 ALA ALA A . n A 1 209 ASN 209 203 203 ASN ASN A . n A 1 210 LEU 210 204 204 LEU LEU A . n A 1 211 THR 211 205 205 THR THR A . n A 1 212 ASP 212 206 206 ASP ASP A . n A 1 213 GLU 213 207 207 GLU GLU A . n A 1 214 LEU 214 208 208 LEU LEU A . n A 1 215 ILE 215 209 209 ILE ILE A . n A 1 216 ILE 216 210 210 ILE ILE A . n A 1 217 GLN 217 211 211 GLN GLN A . n A 1 218 ASN 218 212 212 ASN ASN A . n A 1 219 LYS 219 213 213 LYS LYS A . n A 1 220 ILE 220 214 214 ILE ILE A . n A 1 221 ASN 221 215 215 ASN ASN A . n A 1 222 TYR 222 216 216 TYR TYR A . n A 1 223 ALA 223 217 217 ALA ALA A . n A 1 224 ASN 224 218 218 ASN ASN A . n A 1 225 LEU 225 219 219 LEU LEU A . n A 1 226 VAL 226 220 220 VAL VAL A . n A 1 227 LEU 227 221 221 LEU LEU A . n A 1 228 GLU 228 222 222 GLU GLU A . n A 1 229 LYS 229 223 223 LYS LYS A . n A 1 230 LEU 230 224 224 LEU LEU A . n A 1 231 LYS 231 225 225 LYS LYS A . n A 1 232 GLU 232 226 226 GLU GLU A . n A 1 233 ALA 233 227 227 ALA ALA A . n A 1 234 SER 234 228 228 SER SER A . n A 1 235 GLU 235 229 229 GLU GLU A . n A 1 236 THR 236 230 230 THR THR A . n A 1 237 SER 237 231 231 SER SER A . n A 1 238 GLY 238 232 232 GLY GLY A . n A 1 239 SER 239 233 233 SER SER A . n A 1 240 PHE 240 234 234 PHE PHE A . n A 1 241 ASN 241 235 235 ASN ASN A . n A 1 242 SER 242 236 236 SER SER A . n A 1 243 ALA 243 237 237 ALA ALA A . n A 1 244 PHE 244 238 238 PHE PHE A . n A 1 245 TYR 245 239 239 TYR TYR A . n A 1 246 ARG 246 240 240 ARG ARG A . n A 1 247 ILE 247 241 241 ILE ILE A . n A 1 248 VAL 248 242 242 VAL VAL A . n A 1 249 ALA 249 243 243 ALA ALA A . n A 1 250 ASN 250 244 244 ASN ASN A . n A 1 251 TYR 251 245 245 TYR TYR A . n A 1 252 TYR 252 246 246 TYR TYR A . n A 1 253 GLN 253 247 247 GLN GLN A . n A 1 254 GLY 254 248 248 GLY GLY A . n A 1 255 ALA 255 249 249 ALA ALA A . n A 1 256 ILE 256 250 250 ILE ILE A . n A 1 257 TRP 257 251 251 TRP TRP A . n A 1 258 MSE 258 252 252 MSE MSE A . n A 1 259 LYS 259 253 253 LYS LYS A . n A 1 260 GLU 260 254 254 GLU GLU A . n A 1 261 GLY 261 255 255 GLY GLY A . n A 1 262 GLU 262 256 256 GLU GLU A . n A 1 263 VAL 263 257 257 VAL VAL A . n A 1 264 GLU 264 258 258 GLU GLU A . n A 1 265 LYS 265 259 259 LYS LYS A . n A 1 266 GLY 266 260 260 GLY GLY A . n A 1 267 TYR 267 261 261 TYR TYR A . n A 1 268 ARG 268 262 262 ARG ARG A . n A 1 269 GLN 269 263 263 GLN GLN A . n A 1 270 ALA 270 264 264 ALA ALA A . n A 1 271 LYS 271 265 265 LYS LYS A . n A 1 272 ARG 272 266 266 ARG ARG A . n A 1 273 ALA 273 267 267 ALA ALA A . n A 1 274 ILE 274 268 268 ILE ILE A . n A 1 275 GLN 275 269 269 GLN GLN A . n A 1 276 THR 276 270 270 THR THR A . n A 1 277 TRP 277 271 271 TRP TRP A . n A 1 278 LYS 278 272 272 LYS LYS A . n A 1 279 GLU 279 273 273 GLU GLU A . n A 1 280 LEU 280 274 274 LEU LEU A . n A 1 281 HIS 281 275 275 HIS HIS A . n A 1 282 TYR 282 276 276 TYR TYR A . n A 1 283 GLU 283 277 277 GLU GLU A . n A 1 284 ALA 284 278 278 ALA ALA A . n A 1 285 ILE 285 279 279 ILE ILE A . n A 1 286 ALA 286 280 280 ALA ALA A . n A 1 287 ASP 287 281 281 ASP ASP A . n A 1 288 LEU 288 282 282 LEU LEU A . n A 1 289 TYR 289 283 283 TYR TYR A . n A 1 290 SER 290 284 284 SER SER A . n A 1 291 VAL 291 285 285 VAL VAL A . n A 1 292 VAL 292 286 286 VAL VAL A . n A 1 293 LEU 293 287 287 LEU LEU A . n A 1 294 LYS 294 288 288 LYS LYS A . n A 1 295 GLN 295 289 289 GLN GLN A . n A 1 296 PHE 296 290 290 PHE PHE A . n A 1 297 LEU 297 291 291 LEU LEU A . n A 1 298 GLU 298 292 292 GLU GLU A . n A 1 299 LYS 299 293 293 LYS LYS A . n A 1 300 GLU 300 294 294 GLU GLU A . n A 1 301 ASN 301 295 295 ASN ASN A . n A 1 302 ILE 302 296 296 ILE ILE A . n A 1 303 GLN 303 297 297 GLN GLN A . n A 1 304 VAL 304 298 ? ? ? A . n A 1 305 GLU 305 299 ? ? ? A . n A 1 306 ASP 306 300 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TLA 1 402 1 TLA TLA A . D 4 PEG 1 403 1 PEG PEG A . E 5 HOH 1 501 1 HOH HOH A . E 5 HOH 2 502 2 HOH HOH A . E 5 HOH 3 503 3 HOH HOH A . E 5 HOH 4 504 4 HOH HOH A . E 5 HOH 5 505 5 HOH HOH A . E 5 HOH 6 506 6 HOH HOH A . E 5 HOH 7 507 7 HOH HOH A . E 5 HOH 8 508 8 HOH HOH A . E 5 HOH 9 509 10 HOH HOH A . E 5 HOH 10 510 11 HOH HOH A . E 5 HOH 11 511 12 HOH HOH A . E 5 HOH 12 512 13 HOH HOH A . E 5 HOH 13 513 14 HOH HOH A . E 5 HOH 14 514 15 HOH HOH A . E 5 HOH 15 515 16 HOH HOH A . E 5 HOH 16 516 18 HOH HOH A . E 5 HOH 17 517 19 HOH HOH A . E 5 HOH 18 518 20 HOH HOH A . E 5 HOH 19 519 21 HOH HOH A . E 5 HOH 20 520 22 HOH HOH A . E 5 HOH 21 521 23 HOH HOH A . E 5 HOH 22 522 24 HOH HOH A . E 5 HOH 23 523 25 HOH HOH A . E 5 HOH 24 524 26 HOH HOH A . E 5 HOH 25 525 27 HOH HOH A . E 5 HOH 26 526 28 HOH HOH A . E 5 HOH 27 527 29 HOH HOH A . E 5 HOH 28 528 30 HOH HOH A . E 5 HOH 29 529 31 HOH HOH A . E 5 HOH 30 530 32 HOH HOH A . E 5 HOH 31 531 33 HOH HOH A . E 5 HOH 32 532 34 HOH HOH A . E 5 HOH 33 533 35 HOH HOH A . E 5 HOH 34 534 36 HOH HOH A . E 5 HOH 35 535 37 HOH HOH A . E 5 HOH 36 536 38 HOH HOH A . E 5 HOH 37 537 40 HOH HOH A . E 5 HOH 38 538 41 HOH HOH A . E 5 HOH 39 539 42 HOH HOH A . E 5 HOH 40 540 43 HOH HOH A . E 5 HOH 41 541 44 HOH HOH A . E 5 HOH 42 542 45 HOH HOH A . E 5 HOH 43 543 48 HOH HOH A . E 5 HOH 44 544 49 HOH HOH A . E 5 HOH 45 545 50 HOH HOH A . E 5 HOH 46 546 51 HOH HOH A . E 5 HOH 47 547 53 HOH HOH A . E 5 HOH 48 548 54 HOH HOH A . E 5 HOH 49 549 55 HOH HOH A . E 5 HOH 50 550 56 HOH HOH A . E 5 HOH 51 551 57 HOH HOH A . E 5 HOH 52 552 58 HOH HOH A . E 5 HOH 53 553 59 HOH HOH A . E 5 HOH 54 554 62 HOH HOH A . E 5 HOH 55 555 63 HOH HOH A . E 5 HOH 56 556 65 HOH HOH A . E 5 HOH 57 557 66 HOH HOH A . E 5 HOH 58 558 69 HOH HOH A . E 5 HOH 59 559 72 HOH HOH A . E 5 HOH 60 560 74 HOH HOH A . E 5 HOH 61 561 76 HOH HOH A . E 5 HOH 62 562 77 HOH HOH A . E 5 HOH 63 563 78 HOH HOH A . E 5 HOH 64 564 79 HOH HOH A . E 5 HOH 65 565 80 HOH HOH A . E 5 HOH 66 566 83 HOH HOH A . E 5 HOH 67 567 86 HOH HOH A . E 5 HOH 68 568 87 HOH HOH A . E 5 HOH 69 569 89 HOH HOH A . E 5 HOH 70 570 91 HOH HOH A . E 5 HOH 71 571 92 HOH HOH A . E 5 HOH 72 572 96 HOH HOH A . E 5 HOH 73 573 97 HOH HOH A . E 5 HOH 74 574 99 HOH HOH A . E 5 HOH 75 575 102 HOH HOH A . E 5 HOH 76 576 104 HOH HOH A . E 5 HOH 77 577 106 HOH HOH A . E 5 HOH 78 578 108 HOH HOH A . E 5 HOH 79 579 110 HOH HOH A . E 5 HOH 80 580 111 HOH HOH A . E 5 HOH 81 581 112 HOH HOH A . E 5 HOH 82 582 114 HOH HOH A . E 5 HOH 83 583 115 HOH HOH A . E 5 HOH 84 584 119 HOH HOH A . E 5 HOH 85 585 123 HOH HOH A . E 5 HOH 86 586 124 HOH HOH A . E 5 HOH 87 587 125 HOH HOH A . E 5 HOH 88 588 127 HOH HOH A . E 5 HOH 89 589 131 HOH HOH A . E 5 HOH 90 590 135 HOH HOH A . E 5 HOH 91 591 136 HOH HOH A . E 5 HOH 92 592 138 HOH HOH A . E 5 HOH 93 593 140 HOH HOH A . E 5 HOH 94 594 143 HOH HOH A . E 5 HOH 95 595 149 HOH HOH A . E 5 HOH 96 596 153 HOH HOH A . E 5 HOH 97 597 154 HOH HOH A . E 5 HOH 98 598 159 HOH HOH A . E 5 HOH 99 599 163 HOH HOH A . E 5 HOH 100 600 168 HOH HOH A . E 5 HOH 101 601 174 HOH HOH A . E 5 HOH 102 602 182 HOH HOH A . E 5 HOH 103 603 205 HOH HOH A . E 5 HOH 104 604 210 HOH HOH A . E 5 HOH 105 605 212 HOH HOH A . E 5 HOH 106 606 213 HOH HOH A . E 5 HOH 107 607 214 HOH HOH A . E 5 HOH 108 608 215 HOH HOH A . E 5 HOH 109 609 216 HOH HOH A . E 5 HOH 110 610 217 HOH HOH A . E 5 HOH 111 611 218 HOH HOH A . E 5 HOH 112 612 219 HOH HOH A . E 5 HOH 113 613 220 HOH HOH A . E 5 HOH 114 614 221 HOH HOH A . E 5 HOH 115 615 222 HOH HOH A . E 5 HOH 116 616 224 HOH HOH A . E 5 HOH 117 617 225 HOH HOH A . E 5 HOH 118 618 226 HOH HOH A . E 5 HOH 119 619 228 HOH HOH A . E 5 HOH 120 620 229 HOH HOH A . E 5 HOH 121 621 230 HOH HOH A . E 5 HOH 122 622 231 HOH HOH A . E 5 HOH 123 623 232 HOH HOH A . E 5 HOH 124 624 233 HOH HOH A . E 5 HOH 125 625 234 HOH HOH A . E 5 HOH 126 626 235 HOH HOH A . E 5 HOH 127 627 236 HOH HOH A . E 5 HOH 128 628 237 HOH HOH A . E 5 HOH 129 629 238 HOH HOH A . E 5 HOH 130 630 239 HOH HOH A . E 5 HOH 131 631 240 HOH HOH A . E 5 HOH 132 632 241 HOH HOH A . E 5 HOH 133 633 242 HOH HOH A . E 5 HOH 134 634 243 HOH HOH A . E 5 HOH 135 635 244 HOH HOH A . E 5 HOH 136 636 245 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900003 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 61 A MSE 55 ? MET SELENOMETHIONINE 2 A MSE 98 A MSE 92 ? MET SELENOMETHIONINE 3 A MSE 156 A MSE 150 ? MET SELENOMETHIONINE 4 A MSE 186 A MSE 180 ? MET SELENOMETHIONINE 5 A MSE 258 A MSE 252 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7850 ? 1 MORE -24 ? 1 'SSA (A^2)' 28230 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_566 x,-y+1,-z+3/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 103.9300000000 0.0000000000 0.0000000000 -1.0000000000 169.2150000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 503 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-07 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Non-polymer description' 8 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' entity_name_com 6 3 'Structure model' pdbx_branch_scheme 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_entity_branch 9 3 'Structure model' pdbx_entity_branch_descriptor 10 3 'Structure model' pdbx_entity_branch_link 11 3 'Structure model' pdbx_entity_branch_list 12 3 'Structure model' pdbx_entity_nonpoly 13 3 'Structure model' pdbx_molecule_features 14 3 'Structure model' pdbx_nonpoly_scheme 15 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_ref_seq_dif 18 3 'Structure model' struct_site 19 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_atom_site.B_iso_or_equiv' 3 3 'Structure model' '_atom_site.Cartn_x' 4 3 'Structure model' '_atom_site.Cartn_y' 5 3 'Structure model' '_atom_site.Cartn_z' 6 3 'Structure model' '_atom_site.auth_asym_id' 7 3 'Structure model' '_atom_site.auth_atom_id' 8 3 'Structure model' '_atom_site.auth_comp_id' 9 3 'Structure model' '_atom_site.auth_seq_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_chem_comp.formula' 13 3 'Structure model' '_chem_comp.formula_weight' 14 3 'Structure model' '_chem_comp.id' 15 3 'Structure model' '_chem_comp.mon_nstd_flag' 16 3 'Structure model' '_chem_comp.name' 17 3 'Structure model' '_chem_comp.type' 18 3 'Structure model' '_entity.formula_weight' 19 3 'Structure model' '_entity.pdbx_description' 20 3 'Structure model' '_entity.type' 21 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 72.9930 49.6334 95.3704 0.1826 0.2215 0.0105 -0.0052 -0.0046 -0.0011 2.8129 1.4792 2.9427 -0.4596 0.5364 -0.4059 0.0642 0.0201 0.1585 0.0714 -0.0748 -0.0629 -0.0246 0.6263 0.0106 'X-RAY DIFFRACTION' 2 ? refined 59.8460 72.2907 77.0757 0.2256 0.0693 0.0856 -0.0077 0.0694 -0.0637 2.0647 5.9887 1.8287 0.4643 1.1826 0.4025 0.0523 -0.2337 0.2174 0.5027 -0.0021 -0.0744 0.0750 0.0851 -0.0501 'X-RAY DIFFRACTION' 3 ? refined 47.2805 81.9201 70.0895 0.2119 0.0885 0.2986 0.0231 0.0098 -0.0434 7.2922 12.4352 9.0444 -5.3705 0.0047 -2.7181 -0.2770 -0.0951 0.0627 -0.3367 0.4064 0.7216 -0.2575 -0.7498 -0.1294 'X-RAY DIFFRACTION' 4 ? refined 55.3582 64.6237 61.9993 0.2542 0.0783 0.0276 0.0543 0.0379 0.0171 2.0467 0.1319 3.2258 0.3417 0.3927 0.5328 0.0647 0.1428 0.2149 -0.0783 -0.0086 0.0194 -0.3792 -0.0956 -0.0561 'X-RAY DIFFRACTION' 5 ? refined 40.4554 53.9753 69.8950 0.1908 0.1252 0.0662 -0.0284 -0.0485 0.0528 2.8933 0.6116 1.5992 0.2570 -0.5806 0.1168 -0.0063 0.4094 0.0156 -0.1919 0.1183 0.1591 0.1095 -0.1837 -0.1120 'X-RAY DIFFRACTION' 6 ? refined 28.4084 62.3949 77.3739 0.1348 0.1362 0.1810 0.0483 -0.0384 0.1066 2.8127 2.6389 4.7080 -0.6060 1.6389 -0.0828 -0.1977 0.0416 0.2178 0.0005 0.1432 0.3516 -0.5531 -0.5273 0.0545 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -2 ? ? A 68 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 69 ? ? A 115 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 116 ? ? A 134 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 135 ? ? A 177 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 178 ? ? A 261 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 262 ? ? A 297 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.8.0069 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OG _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SER _pdbx_validate_symm_contact.auth_seq_id_1 133 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OG _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 133 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_665 _pdbx_validate_symm_contact.dist 1.89 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 159 ? ? CZ A ARG 159 ? ? NH1 A ARG 159 ? ? 124.86 120.30 4.56 0.50 N 2 1 NE A ARG 159 ? ? CZ A ARG 159 ? ? NH2 A ARG 159 ? ? 112.75 120.30 -7.55 0.50 N 3 1 CA A MSE 180 ? ? CB A MSE 180 ? ? CG A MSE 180 ? ? 132.98 113.30 19.68 1.70 N 4 1 CB A ASP 191 ? ? CG A ASP 191 ? ? OD1 A ASP 191 ? ? 124.41 118.30 6.11 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 69 ? ? -121.32 -82.65 2 1 ARG A 103 ? ? 35.42 46.28 3 1 THR A 104 ? ? -36.48 130.73 4 1 LYS A 213 ? ? -101.61 79.83 5 1 TYR A 276 ? ? -104.25 62.68 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 HIS A -1 ? ? HIS A 0 ? ? -141.47 2 1 ARG A 103 ? ? THR A 104 ? ? 138.33 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -2 ? CE1 ? A HIS 4 CE1 2 1 Y 1 A HIS -2 ? NE2 ? A HIS 4 NE2 3 1 Y 1 A HIS 0 ? ND1 ? A HIS 6 ND1 4 1 Y 1 A HIS 0 ? CD2 ? A HIS 6 CD2 5 1 Y 1 A HIS 0 ? CE1 ? A HIS 6 CE1 6 1 Y 1 A HIS 0 ? NE2 ? A HIS 6 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A MSE 1 ? A MSE 7 5 1 Y 1 A GLY 2 ? A GLY 8 6 1 Y 1 A PHE 130 ? A PHE 136 7 1 Y 1 A ASP 131 ? A ASP 137 8 1 Y 1 A GLU 132 ? A GLU 138 9 1 Y 1 A VAL 298 ? A VAL 304 10 1 Y 1 A GLU 299 ? A GLU 305 11 1 Y 1 A ASP 300 ? A ASP 306 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 B SUC 1 n B 2 FRU 2 B FRU 2 B SUC 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 FRU 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'L(+)-TARTARIC ACID' TLA 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #