HEADER DNA BINDING PROTEIN 15-DEC-14 4RYK TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR FROM TITLE 2 LISTERIA MONOCYTOGENES EGD-E COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO0325 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: LMO0325; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG87 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,Z.WAWRZAK,G.MINASOV,O.KIRYUKHINA,R.JEDRZEJCZAK, AUTHOR 2 A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 3 29-JUL-20 4RYK 1 COMPND REMARK SEQADV HET REVDAT 3 2 1 HETNAM FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 22-NOV-17 4RYK 1 REMARK REVDAT 1 07-JAN-15 4RYK 0 JRNL AUTH E.V.FILIPPOVA,Z.WAWRZAK,G.MINASOV,O.KIRYUKHINA, JRNL AUTH 2 R.JEDRZEJCZAK,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FROM LISTERIA MONOCYTOGENES EGD-E JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.22000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : -2.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2574 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2442 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3461 ; 1.647 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5608 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;35.971 ;23.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;15.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2847 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1182 ; 2.753 ; 3.606 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1181 ; 2.744 ; 3.605 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1474 ; 4.098 ; 5.379 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1475 ; 4.101 ; 5.381 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 4.190 ; 4.189 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1390 ; 4.190 ; 4.189 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1988 ; 6.384 ; 6.100 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3185 ; 8.513 ;30.255 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3186 ; 8.512 ;30.267 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 72.9930 49.6334 95.3704 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.2215 REMARK 3 T33: 0.0105 T12: -0.0052 REMARK 3 T13: -0.0046 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.8129 L22: 1.4792 REMARK 3 L33: 2.9427 L12: -0.4596 REMARK 3 L13: 0.5364 L23: -0.4059 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.0201 S13: 0.1585 REMARK 3 S21: 0.0714 S22: -0.0748 S23: -0.0629 REMARK 3 S31: -0.0246 S32: 0.6263 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 59.8460 72.2907 77.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.0693 REMARK 3 T33: 0.0856 T12: -0.0077 REMARK 3 T13: 0.0694 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 2.0647 L22: 5.9887 REMARK 3 L33: 1.8287 L12: 0.4643 REMARK 3 L13: 1.1826 L23: 0.4025 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.2337 S13: 0.2174 REMARK 3 S21: 0.5027 S22: -0.0021 S23: -0.0744 REMARK 3 S31: 0.0750 S32: 0.0851 S33: -0.0501 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2805 81.9201 70.0895 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.0885 REMARK 3 T33: 0.2986 T12: 0.0231 REMARK 3 T13: 0.0098 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 7.2922 L22: 12.4352 REMARK 3 L33: 9.0444 L12: -5.3705 REMARK 3 L13: 0.0047 L23: -2.7181 REMARK 3 S TENSOR REMARK 3 S11: -0.2770 S12: -0.0951 S13: 0.0627 REMARK 3 S21: -0.3367 S22: 0.4064 S23: 0.7216 REMARK 3 S31: -0.2575 S32: -0.7498 S33: -0.1294 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 55.3582 64.6237 61.9993 REMARK 3 T TENSOR REMARK 3 T11: 0.2542 T22: 0.0783 REMARK 3 T33: 0.0276 T12: 0.0543 REMARK 3 T13: 0.0379 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.0467 L22: 0.1319 REMARK 3 L33: 3.2258 L12: 0.3417 REMARK 3 L13: 0.3927 L23: 0.5328 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.1428 S13: 0.2149 REMARK 3 S21: -0.0783 S22: -0.0086 S23: 0.0194 REMARK 3 S31: -0.3792 S32: -0.0956 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4554 53.9753 69.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.1252 REMARK 3 T33: 0.0662 T12: -0.0284 REMARK 3 T13: -0.0485 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 2.8933 L22: 0.6116 REMARK 3 L33: 1.5992 L12: 0.2570 REMARK 3 L13: -0.5806 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.4094 S13: 0.0156 REMARK 3 S21: -0.1919 S22: 0.1183 S23: 0.1591 REMARK 3 S31: 0.1095 S32: -0.1837 S33: -0.1120 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4084 62.3949 77.3739 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.1362 REMARK 3 T33: 0.1810 T12: 0.0483 REMARK 3 T13: -0.0384 T23: 0.1066 REMARK 3 L TENSOR REMARK 3 L11: 2.8127 L22: 2.6389 REMARK 3 L33: 4.7080 L12: -0.6060 REMARK 3 L13: 1.6389 L23: -0.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.1977 S12: 0.0416 S13: 0.2178 REMARK 3 S21: 0.0005 S22: 0.1432 S23: 0.3516 REMARK 3 S31: -0.5531 S32: -0.5273 S33: 0.0545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 56.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M AMMONIUM TARTRATE, 25 % SUCROSE, REMARK 280 10 % PEG 400, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.15500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.15500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.15500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.40500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.15500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.40500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 103.93000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 169.21500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 PHE A 130 REMARK 465 ASP A 131 REMARK 465 GLU A 132 REMARK 465 VAL A 298 REMARK 465 GLU A 299 REMARK 465 ASP A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CE1 NE2 REMARK 470 HIS A 0 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 133 OG SER A 133 6665 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 MSE A 180 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 69 -82.65 -121.32 REMARK 500 ARG A 103 46.28 35.42 REMARK 500 THR A 104 130.73 -36.48 REMARK 500 LYS A 213 79.83 -101.61 REMARK 500 TYR A 276 62.68 -104.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -1 HIS A 0 -141.47 REMARK 500 ARG A 103 THR A 104 138.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC106808 RELATED DB: TARGETTRACK DBREF 4RYK A 1 300 UNP Q8YA39 Q8YA39_LISMO 1 300 SEQADV 4RYK HIS A -5 UNP Q8YA39 EXPRESSION TAG SEQADV 4RYK HIS A -4 UNP Q8YA39 EXPRESSION TAG SEQADV 4RYK HIS A -3 UNP Q8YA39 EXPRESSION TAG SEQADV 4RYK HIS A -2 UNP Q8YA39 EXPRESSION TAG SEQADV 4RYK HIS A -1 UNP Q8YA39 EXPRESSION TAG SEQADV 4RYK HIS A 0 UNP Q8YA39 EXPRESSION TAG SEQRES 1 A 306 HIS HIS HIS HIS HIS HIS MSE GLY SER TYR GLY GLU LEU SEQRES 2 A 306 ILE ARG GLU ILE ARG LEU SER LYS GLY LEU THR GLN LYS SEQRES 3 A 306 GLU VAL TYR THR GLY ILE ILE SER ARG SER TYR ALA ILE SEQRES 4 A 306 GLY PHE GLU LYS GLY LYS HIS GLU ILE THR LEU SER LEU SEQRES 5 A 306 PHE GLU GLU ILE LEU LYS ARG ILE MSE VAL PRO LEU ASP SEQRES 6 A 306 GLU PHE PHE PHE ILE TYR ARG ASP PHE SER SER THR GLU SEQRES 7 A 306 ASP ASP SER PHE TRP ILE ASP PHE VAL GLU LEU SER GLY SEQRES 8 A 306 LYS ASN ASP VAL VAL GLY MSE GLN ALA LEU LEU ASP LYS SEQRES 9 A 306 ILE THR LEU GLU ARG THR GLU GLN SER GLU VAL ARG LYS SEQRES 10 A 306 ALA ILE LEU HIS THR ARG ILE GLN THR ILE ASN HIS TYR SEQRES 11 A 306 LEU ARG THR ASN VAL PHE ASP GLU SER ASN ILE SER ASP SEQRES 12 A 306 GLU TYR LYS LYS ILE ILE HIS ASP TYR LEU TRP LYS MSE SEQRES 13 A 306 GLN THR TRP THR LEU GLU GLU VAL ARG ILE PHE SER ASN SEQRES 14 A 306 GLY ILE SER PHE PHE GLU GLU GLU VAL GLN ILE HIS PHE SEQRES 15 A 306 TYR GLN ILE MSE LEU LYS SER TYR GLU LYS TYR ARG TYR SEQRES 16 A 306 TYR ASP ARG GLY ARG LEU LEU PHE CYS HIS LEU PHE ALA SEQRES 17 A 306 ASN LEU THR ASP GLU LEU ILE ILE GLN ASN LYS ILE ASN SEQRES 18 A 306 TYR ALA ASN LEU VAL LEU GLU LYS LEU LYS GLU ALA SER SEQRES 19 A 306 GLU THR SER GLY SER PHE ASN SER ALA PHE TYR ARG ILE SEQRES 20 A 306 VAL ALA ASN TYR TYR GLN GLY ALA ILE TRP MSE LYS GLU SEQRES 21 A 306 GLY GLU VAL GLU LYS GLY TYR ARG GLN ALA LYS ARG ALA SEQRES 22 A 306 ILE GLN THR TRP LYS GLU LEU HIS TYR GLU ALA ILE ALA SEQRES 23 A 306 ASP LEU TYR SER VAL VAL LEU LYS GLN PHE LEU GLU LYS SEQRES 24 A 306 GLU ASN ILE GLN VAL GLU ASP MODRES 4RYK MSE A 55 MET SELENOMETHIONINE MODRES 4RYK MSE A 92 MET SELENOMETHIONINE MODRES 4RYK MSE A 150 MET SELENOMETHIONINE MODRES 4RYK MSE A 180 MET SELENOMETHIONINE MODRES 4RYK MSE A 252 MET SELENOMETHIONINE HET MSE A 55 8 HET MSE A 92 8 HET MSE A 150 8 HET MSE A 180 8 HET MSE A 252 8 HET GLC B 1 11 HET FRU B 2 1 HET TLA A 402 10 HET PEG A 403 7 HETNAM MSE SELENOMETHIONINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM TLA L(+)-TARTARIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 GLC C6 H12 O6 FORMUL 2 FRU C6 H12 O6 FORMUL 3 TLA C4 H6 O6 FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *136(H2 O) HELIX 1 1 TYR A 4 LYS A 15 1 12 HELIX 2 2 THR A 18 THR A 24 1 7 HELIX 3 3 SER A 28 LYS A 37 1 10 HELIX 4 4 THR A 43 MSE A 55 1 13 HELIX 5 5 PRO A 57 ARG A 66 1 10 HELIX 6 6 SER A 75 LYS A 86 1 12 HELIX 7 7 ASP A 88 ARG A 103 1 16 HELIX 8 8 GLN A 106 THR A 127 1 22 HELIX 9 9 SER A 136 TRP A 148 1 13 HELIX 10 10 THR A 154 ILE A 165 1 12 HELIX 11 11 SER A 166 PHE A 168 5 3 HELIX 12 12 GLU A 169 ARG A 188 1 20 HELIX 13 13 TYR A 190 GLN A 211 1 22 HELIX 14 14 LYS A 213 THR A 230 1 18 HELIX 15 15 SER A 231 ASN A 235 5 5 HELIX 16 16 SER A 236 GLU A 254 1 19 HELIX 17 17 GLU A 256 LEU A 274 1 19 HELIX 18 18 TYR A 276 ASN A 295 1 20 LINK C ILE A 54 N MSE A 55 1555 1555 1.35 LINK C MSE A 55 N VAL A 56 1555 1555 1.32 LINK C GLY A 91 N MSE A 92 1555 1555 1.32 LINK C MSE A 92 N GLN A 93 1555 1555 1.34 LINK C LYS A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N GLN A 151 1555 1555 1.31 LINK C ILE A 179 N MSE A 180 1555 1555 1.34 LINK C MSE A 180 N LEU A 181 1555 1555 1.32 LINK C TRP A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N LYS A 253 1555 1555 1.31 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.43 CRYST1 86.310 103.930 112.810 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008864 0.00000