data_4RYM # _entry.id 4RYM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB087957 PDB 4RYM WWPDB D_1000087957 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4RYI 'Same protein as monomer' unspecified PDB 4RYJ 'Same protein as monomer' unspecified PDB 4RYN 'Same protein as monomer, Type II' unspecified PDB 4RYO . unspecified TargetTrack NYCOMPS-GO.14070 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RYM _pdbx_database_status.recvd_initial_deposition_date 2014-12-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guo, Y.' 1 'Liu, Q.' 2 'Hendrickson, W.A.' 3 'New York Consortium on Membrane Protein Structure (NYCOMPS)' 4 # _citation.id primary _citation.title 'Protein structure. Structure and activity of tryptophan-rich TSPO proteins.' _citation.journal_abbrev Science _citation.journal_volume 347 _citation.page_first 551 _citation.page_last 555 _citation.year 2015 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25635100 _citation.pdbx_database_id_DOI 10.1126/science.aaa1534 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Guo, Y.' 1 primary 'Kalathur, R.C.' 2 primary 'Liu, Q.' 3 primary 'Kloss, B.' 4 primary 'Bruni, R.' 5 primary 'Ginter, C.' 6 primary 'Kloppmann, E.' 7 primary 'Rost, B.' 8 primary 'Hendrickson, W.A.' 9 # _cell.entry_id 4RYM _cell.length_a 33.356 _cell.length_b 49.538 _cell.length_c 99.213 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RYM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Integral membrane protein' 21496.965 1 ? ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDYKDDDDKHHHHHHHHHHENLYFQSYVMFMKKSSIIVFFLTYGLFYVSSVLFPIDRTWYDALEKPSWTPPGMTIGMIWA VLFGLIALSVAIIYNNYGFKPKTFWFLFLLNYIFNQAFSYFQFSQKNLFLATVDCLLVAITTLLLIMFSSNLSKVSAWLL IPYFLWSAFATYLSWTIYSIN ; _entity_poly.pdbx_seq_one_letter_code_can ;MDYKDDDDKHHHHHHHHHHENLYFQSYVMFMKKSSIIVFFLTYGLFYVSSVLFPIDRTWYDALEKPSWTPPGMTIGMIWA VLFGLIALSVAIIYNNYGFKPKTFWFLFLLNYIFNQAFSYFQFSQKNLFLATVDCLLVAITTLLLIMFSSNLSKVSAWLL IPYFLWSAFATYLSWTIYSIN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYCOMPS-GO.14070 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 TYR n 1 4 LYS n 1 5 ASP n 1 6 ASP n 1 7 ASP n 1 8 ASP n 1 9 LYS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 HIS n 1 14 HIS n 1 15 HIS n 1 16 HIS n 1 17 HIS n 1 18 HIS n 1 19 HIS n 1 20 GLU n 1 21 ASN n 1 22 LEU n 1 23 TYR n 1 24 PHE n 1 25 GLN n 1 26 SER n 1 27 TYR n 1 28 VAL n 1 29 MET n 1 30 PHE n 1 31 MET n 1 32 LYS n 1 33 LYS n 1 34 SER n 1 35 SER n 1 36 ILE n 1 37 ILE n 1 38 VAL n 1 39 PHE n 1 40 PHE n 1 41 LEU n 1 42 THR n 1 43 TYR n 1 44 GLY n 1 45 LEU n 1 46 PHE n 1 47 TYR n 1 48 VAL n 1 49 SER n 1 50 SER n 1 51 VAL n 1 52 LEU n 1 53 PHE n 1 54 PRO n 1 55 ILE n 1 56 ASP n 1 57 ARG n 1 58 THR n 1 59 TRP n 1 60 TYR n 1 61 ASP n 1 62 ALA n 1 63 LEU n 1 64 GLU n 1 65 LYS n 1 66 PRO n 1 67 SER n 1 68 TRP n 1 69 THR n 1 70 PRO n 1 71 PRO n 1 72 GLY n 1 73 MET n 1 74 THR n 1 75 ILE n 1 76 GLY n 1 77 MET n 1 78 ILE n 1 79 TRP n 1 80 ALA n 1 81 VAL n 1 82 LEU n 1 83 PHE n 1 84 GLY n 1 85 LEU n 1 86 ILE n 1 87 ALA n 1 88 LEU n 1 89 SER n 1 90 VAL n 1 91 ALA n 1 92 ILE n 1 93 ILE n 1 94 TYR n 1 95 ASN n 1 96 ASN n 1 97 TYR n 1 98 GLY n 1 99 PHE n 1 100 LYS n 1 101 PRO n 1 102 LYS n 1 103 THR n 1 104 PHE n 1 105 TRP n 1 106 PHE n 1 107 LEU n 1 108 PHE n 1 109 LEU n 1 110 LEU n 1 111 ASN n 1 112 TYR n 1 113 ILE n 1 114 PHE n 1 115 ASN n 1 116 GLN n 1 117 ALA n 1 118 PHE n 1 119 SER n 1 120 TYR n 1 121 PHE n 1 122 GLN n 1 123 PHE n 1 124 SER n 1 125 GLN n 1 126 LYS n 1 127 ASN n 1 128 LEU n 1 129 PHE n 1 130 LEU n 1 131 ALA n 1 132 THR n 1 133 VAL n 1 134 ASP n 1 135 CYS n 1 136 LEU n 1 137 LEU n 1 138 VAL n 1 139 ALA n 1 140 ILE n 1 141 THR n 1 142 THR n 1 143 LEU n 1 144 LEU n 1 145 LEU n 1 146 ILE n 1 147 MET n 1 148 PHE n 1 149 SER n 1 150 SER n 1 151 ASN n 1 152 LEU n 1 153 SER n 1 154 LYS n 1 155 VAL n 1 156 SER n 1 157 ALA n 1 158 TRP n 1 159 LEU n 1 160 LEU n 1 161 ILE n 1 162 PRO n 1 163 TYR n 1 164 PHE n 1 165 LEU n 1 166 TRP n 1 167 SER n 1 168 ALA n 1 169 PHE n 1 170 ALA n 1 171 THR n 1 172 TYR n 1 173 LEU n 1 174 SER n 1 175 TRP n 1 176 THR n 1 177 ILE n 1 178 TYR n 1 179 SER n 1 180 ILE n 1 181 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC_3136, DSM 31' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 14579 / DSM 31' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226900 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pMCSG7 10xHis 30021246' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q81BL7_BACCR _struct_ref.pdbx_db_accession Q81BL7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFMKKSSIIVFFLTYGLFYVSSVLFPIDRTWYDALEKPSWTPPGMTIGMIWAVLFGLIALSVAIIYNNYGFKPKTFWFLF LLNYIFNQAFSYFQFSQKNLFLATVDCLLVAITTLLLIMFSSNLSKVSAWLLIPYFLWSAFATYLSWTIYSIN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RYM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 29 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q81BL7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 153 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RYM MET A 1 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -27 1 1 4RYM ASP A 2 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -26 2 1 4RYM TYR A 3 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -25 3 1 4RYM LYS A 4 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -24 4 1 4RYM ASP A 5 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -23 5 1 4RYM ASP A 6 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -22 6 1 4RYM ASP A 7 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -21 7 1 4RYM ASP A 8 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -20 8 1 4RYM LYS A 9 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -19 9 1 4RYM HIS A 10 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -18 10 1 4RYM HIS A 11 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -17 11 1 4RYM HIS A 12 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -16 12 1 4RYM HIS A 13 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -15 13 1 4RYM HIS A 14 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -14 14 1 4RYM HIS A 15 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -13 15 1 4RYM HIS A 16 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -12 16 1 4RYM HIS A 17 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -11 17 1 4RYM HIS A 18 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -10 18 1 4RYM HIS A 19 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -9 19 1 4RYM GLU A 20 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -8 20 1 4RYM ASN A 21 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -7 21 1 4RYM LEU A 22 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -6 22 1 4RYM TYR A 23 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -5 23 1 4RYM PHE A 24 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -4 24 1 4RYM GLN A 25 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -3 25 1 4RYM SER A 26 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -2 26 1 4RYM TYR A 27 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' -1 27 1 4RYM VAL A 28 ? UNP Q81BL7 ? ? 'EXPRESSION TAG' 0 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4RYM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method LCP _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;crystals grew from 0.1 M sodium cacodylate, 5% w/v PGA LM (poly-l-glutamic acid, low molecular weight~ 200-400 kDa), 30% v/v PEG 550MME (Polyethylene glycol monomethyl ether 550), pH 6.5 in LCP with monoolein (9.9 MAG), temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2014-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'A KOHZU double crystal monochromator with a sagittally focused second crystal.' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 2.0735 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 2.0735 # _reflns.entry_id 4RYM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.80 _reflns.number_obs 4153 _reflns.number_all ? _reflns.percent_possible_obs 94.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.87 _reflns_shell.percent_possible_all 70.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4RYM _refine.ls_number_reflns_obs 4122 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.053 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 93.98 _refine.ls_R_factor_obs 0.2196 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2174 _refine.ls_R_factor_R_free 0.2718 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.71 _refine.ls_number_reflns_R_free 194 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'Multi-Crystal Iodine SAD' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.pdbx_overall_phase_error 30.67 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1256 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1259 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 35.053 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.005 ? ? 1303 ? 'X-RAY DIFFRACTION' f_angle_d 0.768 ? ? 1784 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 11.510 ? ? 422 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.030 ? ? 202 ? 'X-RAY DIFFRACTION' f_plane_restr 0.006 ? ? 208 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 35.0556 _refine_ls_shell.number_reflns_R_work 3928 _refine_ls_shell.R_factor_R_work 0.2174 _refine_ls_shell.percent_reflns_obs 94.00 _refine_ls_shell.R_factor_R_free 0.2718 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 194 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4RYM _struct.title 'Crystal structure of BcTSPO Iodo Type1 monomer' _struct.pdbx_descriptor 'Integral membrane protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RYM _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Structural Genomics, PSI-Biology, Protein Structure Initiative, New York Consortium on Membrane Protein Structure, NYCOMPS, Receptor, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 34 ? PHE A 46 ? SER A 6 PHE A 18 1 ? 13 HELX_P HELX_P2 2 TYR A 47 ? PHE A 53 ? TYR A 19 PHE A 25 1 ? 7 HELX_P HELX_P3 3 ASP A 56 ? LEU A 63 ? ASP A 28 LEU A 35 1 ? 8 HELX_P HELX_P4 4 PRO A 71 ? GLY A 98 ? PRO A 43 GLY A 70 1 ? 28 HELX_P HELX_P5 5 PRO A 101 ? PHE A 123 ? PRO A 73 PHE A 95 1 ? 23 HELX_P HELX_P6 6 ASN A 127 ? SER A 150 ? ASN A 99 SER A 122 1 ? 24 HELX_P HELX_P7 7 SER A 153 ? LEU A 160 ? SER A 125 LEU A 132 1 ? 8 HELX_P HELX_P8 8 LEU A 160 ? ASN A 181 ? LEU A 132 ASN A 153 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id IOD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id I _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 107 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IOD _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 0.917 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 201' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 CYS A 135 ? CYS A 107 . ? 1_555 ? 2 AC2 1 TYR A 178 ? TYR A 150 . ? 1_555 ? 3 AC3 3 TYR A 60 ? TYR A 32 . ? 1_555 ? 4 AC3 3 GLN A 122 ? GLN A 94 . ? 1_555 ? 5 AC3 3 ILE A 177 ? ILE A 149 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RYM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RYM _atom_sites.fract_transf_matrix[1][1] 0.029980 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020187 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010079 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -27 ? ? ? A . n A 1 2 ASP 2 -26 ? ? ? A . n A 1 3 TYR 3 -25 ? ? ? A . n A 1 4 LYS 4 -24 ? ? ? A . n A 1 5 ASP 5 -23 ? ? ? A . n A 1 6 ASP 6 -22 ? ? ? A . n A 1 7 ASP 7 -21 ? ? ? A . n A 1 8 ASP 8 -20 ? ? ? A . n A 1 9 LYS 9 -19 ? ? ? A . n A 1 10 HIS 10 -18 ? ? ? A . n A 1 11 HIS 11 -17 ? ? ? A . n A 1 12 HIS 12 -16 ? ? ? A . n A 1 13 HIS 13 -15 ? ? ? A . n A 1 14 HIS 14 -14 ? ? ? A . n A 1 15 HIS 15 -13 ? ? ? A . n A 1 16 HIS 16 -12 ? ? ? A . n A 1 17 HIS 17 -11 ? ? ? A . n A 1 18 HIS 18 -10 ? ? ? A . n A 1 19 HIS 19 -9 ? ? ? A . n A 1 20 GLU 20 -8 ? ? ? A . n A 1 21 ASN 21 -7 ? ? ? A . n A 1 22 LEU 22 -6 ? ? ? A . n A 1 23 TYR 23 -5 ? ? ? A . n A 1 24 PHE 24 -4 ? ? ? A . n A 1 25 GLN 25 -3 ? ? ? A . n A 1 26 SER 26 -2 ? ? ? A . n A 1 27 TYR 27 -1 ? ? ? A . n A 1 28 VAL 28 0 0 VAL ALA A . n A 1 29 MET 29 1 1 MET MET A . n A 1 30 PHE 30 2 2 PHE PHE A . n A 1 31 MET 31 3 3 MET MET A . n A 1 32 LYS 32 4 4 LYS LYS A . n A 1 33 LYS 33 5 5 LYS LYS A . n A 1 34 SER 34 6 6 SER SER A . n A 1 35 SER 35 7 7 SER SER A . n A 1 36 ILE 36 8 8 ILE ILE A . n A 1 37 ILE 37 9 9 ILE ILE A . n A 1 38 VAL 38 10 10 VAL VAL A . n A 1 39 PHE 39 11 11 PHE PHE A . n A 1 40 PHE 40 12 12 PHE PHE A . n A 1 41 LEU 41 13 13 LEU LEU A . n A 1 42 THR 42 14 14 THR THR A . n A 1 43 TYR 43 15 15 TYR TYR A . n A 1 44 GLY 44 16 16 GLY GLY A . n A 1 45 LEU 45 17 17 LEU LEU A . n A 1 46 PHE 46 18 18 PHE PHE A . n A 1 47 TYR 47 19 19 TYR TYR A . n A 1 48 VAL 48 20 20 VAL VAL A . n A 1 49 SER 49 21 21 SER SER A . n A 1 50 SER 50 22 22 SER SER A . n A 1 51 VAL 51 23 23 VAL VAL A . n A 1 52 LEU 52 24 24 LEU LEU A . n A 1 53 PHE 53 25 25 PHE PHE A . n A 1 54 PRO 54 26 26 PRO PRO A . n A 1 55 ILE 55 27 27 ILE ILE A . n A 1 56 ASP 56 28 28 ASP ASP A . n A 1 57 ARG 57 29 29 ARG ARG A . n A 1 58 THR 58 30 30 THR THR A . n A 1 59 TRP 59 31 31 TRP TRP A . n A 1 60 TYR 60 32 32 TYR TYR A . n A 1 61 ASP 61 33 33 ASP ASP A . n A 1 62 ALA 62 34 34 ALA ALA A . n A 1 63 LEU 63 35 35 LEU LEU A . n A 1 64 GLU 64 36 36 GLU GLU A . n A 1 65 LYS 65 37 37 LYS LYS A . n A 1 66 PRO 66 38 38 PRO PRO A . n A 1 67 SER 67 39 39 SER SER A . n A 1 68 TRP 68 40 40 TRP TRP A . n A 1 69 THR 69 41 41 THR THR A . n A 1 70 PRO 70 42 42 PRO PRO A . n A 1 71 PRO 71 43 43 PRO PRO A . n A 1 72 GLY 72 44 44 GLY GLY A . n A 1 73 MET 73 45 45 MET MET A . n A 1 74 THR 74 46 46 THR THR A . n A 1 75 ILE 75 47 47 ILE ILE A . n A 1 76 GLY 76 48 48 GLY GLY A . n A 1 77 MET 77 49 49 MET MET A . n A 1 78 ILE 78 50 50 ILE ILE A . n A 1 79 TRP 79 51 51 TRP TRP A . n A 1 80 ALA 80 52 52 ALA ALA A . n A 1 81 VAL 81 53 53 VAL VAL A . n A 1 82 LEU 82 54 54 LEU LEU A . n A 1 83 PHE 83 55 55 PHE PHE A . n A 1 84 GLY 84 56 56 GLY GLY A . n A 1 85 LEU 85 57 57 LEU LEU A . n A 1 86 ILE 86 58 58 ILE ILE A . n A 1 87 ALA 87 59 59 ALA ALA A . n A 1 88 LEU 88 60 60 LEU LEU A . n A 1 89 SER 89 61 61 SER SER A . n A 1 90 VAL 90 62 62 VAL VAL A . n A 1 91 ALA 91 63 63 ALA ALA A . n A 1 92 ILE 92 64 64 ILE ILE A . n A 1 93 ILE 93 65 65 ILE ILE A . n A 1 94 TYR 94 66 66 TYR TYR A . n A 1 95 ASN 95 67 67 ASN ASN A . n A 1 96 ASN 96 68 68 ASN ASN A . n A 1 97 TYR 97 69 69 TYR TYR A . n A 1 98 GLY 98 70 70 GLY GLY A . n A 1 99 PHE 99 71 71 PHE PHE A . n A 1 100 LYS 100 72 72 LYS LYS A . n A 1 101 PRO 101 73 73 PRO PRO A . n A 1 102 LYS 102 74 74 LYS LYS A . n A 1 103 THR 103 75 75 THR THR A . n A 1 104 PHE 104 76 76 PHE PHE A . n A 1 105 TRP 105 77 77 TRP TRP A . n A 1 106 PHE 106 78 78 PHE PHE A . n A 1 107 LEU 107 79 79 LEU LEU A . n A 1 108 PHE 108 80 80 PHE PHE A . n A 1 109 LEU 109 81 81 LEU LEU A . n A 1 110 LEU 110 82 82 LEU LEU A . n A 1 111 ASN 111 83 83 ASN ASN A . n A 1 112 TYR 112 84 84 TYR TYR A . n A 1 113 ILE 113 85 85 ILE ILE A . n A 1 114 PHE 114 86 86 PHE PHE A . n A 1 115 ASN 115 87 87 ASN ASN A . n A 1 116 GLN 116 88 88 GLN GLN A . n A 1 117 ALA 117 89 89 ALA ALA A . n A 1 118 PHE 118 90 90 PHE PHE A . n A 1 119 SER 119 91 91 SER SER A . n A 1 120 TYR 120 92 92 TYR TYR A . n A 1 121 PHE 121 93 93 PHE PHE A . n A 1 122 GLN 122 94 94 GLN GLN A . n A 1 123 PHE 123 95 95 PHE PHE A . n A 1 124 SER 124 96 96 SER SER A . n A 1 125 GLN 125 97 97 GLN GLN A . n A 1 126 LYS 126 98 98 LYS LYS A . n A 1 127 ASN 127 99 99 ASN ASN A . n A 1 128 LEU 128 100 100 LEU LEU A . n A 1 129 PHE 129 101 101 PHE PHE A . n A 1 130 LEU 130 102 102 LEU LEU A . n A 1 131 ALA 131 103 103 ALA ALA A . n A 1 132 THR 132 104 104 THR THR A . n A 1 133 VAL 133 105 105 VAL VAL A . n A 1 134 ASP 134 106 106 ASP ASP A . n A 1 135 CYS 135 107 107 CYS CYS A . n A 1 136 LEU 136 108 108 LEU LEU A . n A 1 137 LEU 137 109 109 LEU LEU A . n A 1 138 VAL 138 110 110 VAL VAL A . n A 1 139 ALA 139 111 111 ALA ALA A . n A 1 140 ILE 140 112 112 ILE ILE A . n A 1 141 THR 141 113 113 THR THR A . n A 1 142 THR 142 114 114 THR THR A . n A 1 143 LEU 143 115 115 LEU LEU A . n A 1 144 LEU 144 116 116 LEU LEU A . n A 1 145 LEU 145 117 117 LEU LEU A . n A 1 146 ILE 146 118 118 ILE ILE A . n A 1 147 MET 147 119 119 MET MET A . n A 1 148 PHE 148 120 120 PHE PHE A . n A 1 149 SER 149 121 121 SER SER A . n A 1 150 SER 150 122 122 SER SER A . n A 1 151 ASN 151 123 123 ASN ASN A . n A 1 152 LEU 152 124 124 LEU LEU A . n A 1 153 SER 153 125 125 SER SER A . n A 1 154 LYS 154 126 126 LYS LYS A . n A 1 155 VAL 155 127 127 VAL VAL A . n A 1 156 SER 156 128 128 SER SER A . n A 1 157 ALA 157 129 129 ALA ALA A . n A 1 158 TRP 158 130 130 TRP TRP A . n A 1 159 LEU 159 131 131 LEU LEU A . n A 1 160 LEU 160 132 132 LEU LEU A . n A 1 161 ILE 161 133 133 ILE ILE A . n A 1 162 PRO 162 134 134 PRO PRO A . n A 1 163 TYR 163 135 135 TYR TYR A . n A 1 164 PHE 164 136 136 PHE PHE A . n A 1 165 LEU 165 137 137 LEU LEU A . n A 1 166 TRP 166 138 138 TRP TRP A . n A 1 167 SER 167 139 139 SER SER A . n A 1 168 ALA 168 140 140 ALA ALA A . n A 1 169 PHE 169 141 141 PHE PHE A . n A 1 170 ALA 170 142 142 ALA ALA A . n A 1 171 THR 171 143 143 THR THR A . n A 1 172 TYR 172 144 144 TYR TYR A . n A 1 173 LEU 173 145 145 LEU LEU A . n A 1 174 SER 174 146 146 SER SER A . n A 1 175 TRP 175 147 147 TRP TRP A . n A 1 176 THR 176 148 148 THR THR A . n A 1 177 ILE 177 149 149 ILE ILE A . n A 1 178 TYR 178 150 150 TYR TYR A . n A 1 179 SER 179 151 151 SER SER A . n A 1 180 ILE 180 152 152 ILE ILE A . n A 1 181 ASN 181 153 153 ASN ASN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Consortium on Membrane Protein Structure' _pdbx_SG_project.initial_of_center NYCOMPS # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 201 1 IOD I A . C 2 IOD 1 202 2 IOD I A . D 2 IOD 1 203 3 IOD I A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-28 2 'Structure model' 1 1 2015-02-11 3 'Structure model' 1 2 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXS phasing . ? 1 PHENIX refinement '(phenix.refine: 1.9_1690)' ? 2 XDS 'data reduction' . ? 3 XDS 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CE1 A TYR 32 ? ? I A IOD 203 ? ? 1.85 2 1 CE2 A TYR 150 ? ? I A IOD 202 ? ? 2.11 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 107 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 107 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 107 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.21 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.01 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 2 ? ? -160.45 115.57 2 1 PHE A 25 ? ? -117.99 78.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 0 ? CG1 ? A VAL 28 CG1 2 1 Y 1 A VAL 0 ? CG2 ? A VAL 28 CG2 3 1 Y 1 A ILE 27 ? CG1 ? A ILE 55 CG1 4 1 Y 1 A ILE 27 ? CG2 ? A ILE 55 CG2 5 1 Y 1 A ILE 27 ? CD1 ? A ILE 55 CD1 6 1 Y 1 A ARG 29 ? CG ? A ARG 57 CG 7 1 Y 1 A ARG 29 ? CD ? A ARG 57 CD 8 1 Y 1 A ARG 29 ? NE ? A ARG 57 NE 9 1 Y 1 A ARG 29 ? CZ ? A ARG 57 CZ 10 1 Y 1 A ARG 29 ? NH1 ? A ARG 57 NH1 11 1 Y 1 A ARG 29 ? NH2 ? A ARG 57 NH2 12 1 Y 1 A LYS 72 ? CG ? A LYS 100 CG 13 1 Y 1 A LYS 72 ? CD ? A LYS 100 CD 14 1 Y 1 A LYS 72 ? CE ? A LYS 100 CE 15 1 Y 1 A LYS 72 ? NZ ? A LYS 100 NZ 16 1 Y 1 A LYS 74 ? CG ? A LYS 102 CG 17 1 Y 1 A LYS 74 ? CD ? A LYS 102 CD 18 1 Y 1 A LYS 74 ? CE ? A LYS 102 CE 19 1 Y 1 A LYS 74 ? NZ ? A LYS 102 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -27 ? A MET 1 2 1 Y 1 A ASP -26 ? A ASP 2 3 1 Y 1 A TYR -25 ? A TYR 3 4 1 Y 1 A LYS -24 ? A LYS 4 5 1 Y 1 A ASP -23 ? A ASP 5 6 1 Y 1 A ASP -22 ? A ASP 6 7 1 Y 1 A ASP -21 ? A ASP 7 8 1 Y 1 A ASP -20 ? A ASP 8 9 1 Y 1 A LYS -19 ? A LYS 9 10 1 Y 1 A HIS -18 ? A HIS 10 11 1 Y 1 A HIS -17 ? A HIS 11 12 1 Y 1 A HIS -16 ? A HIS 12 13 1 Y 1 A HIS -15 ? A HIS 13 14 1 Y 1 A HIS -14 ? A HIS 14 15 1 Y 1 A HIS -13 ? A HIS 15 16 1 Y 1 A HIS -12 ? A HIS 16 17 1 Y 1 A HIS -11 ? A HIS 17 18 1 Y 1 A HIS -10 ? A HIS 18 19 1 Y 1 A HIS -9 ? A HIS 19 20 1 Y 1 A GLU -8 ? A GLU 20 21 1 Y 1 A ASN -7 ? A ASN 21 22 1 Y 1 A LEU -6 ? A LEU 22 23 1 Y 1 A TYR -5 ? A TYR 23 24 1 Y 1 A PHE -4 ? A PHE 24 25 1 Y 1 A GLN -3 ? A GLN 25 26 1 Y 1 A SER -2 ? A SER 26 27 1 Y 1 A TYR -1 ? A TYR 27 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'IODIDE ION' _pdbx_entity_nonpoly.comp_id IOD #