data_4RYV # _entry.id 4RYV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.290 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RYV RCSB RCSB087966 WWPDB D_1000087966 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1bv1 'X-ray and NMR structure of Bet v 1, the origin of birch pollen allergy' unspecified PDB 1FM4 'Crystal structure of a hypoallergenic isoform of the major birch pollen allergen Bet v 1L' unspecified PDB 1ICX 'Crystal structure of pathogenesis-related protein LLPR10.1A from yellow lupin' unspecified PDB 1IFV 'Crystal structure of pathogenesis-related protein LLPR10.1B from yellow lupin' unspecified PDB 1XDF 'Crystal structure of pathogenesis-related protein LLPR10.2A from yellow lupin' unspecified PDB 2FLH 'Crystal structure of cytokinin-specific binding protein from mung bean in complex with cytokinin' unspecified PDB 2QIM '3E85 Crystal structure of pathogenesis-related protein LLPR10.2B from yellow lupin in complex with diphenylurea' unspecified PDB 3E85 'Crystal structure of pathogenesis-related protein LLPR10.2B from yellow lupin in complex with diphenylurea' unspecified PDB 4Q0K 'Crystal Structure of Phytohormone Binding Protein from Medicago truncatula in complex with gibberellic acid (GA3)' unspecified PDB 4A80 'Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with 8-Anilinonaphthalene-1-sulfonate (ANS)' unspecified PDB 4A81 ;Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in ternary complex with 8-Anilinonaphthalene-1-sulfonate (ANS) and deoxycholic acid ; unspecified PDB 3IE5 ;Crystal structure of Hyp-1, a St. John's wort protein implicated in the biosynthesis of hypericin ; unspecified PDB 4A83 'Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with deoxycholate' unspecified PDB 4A85 'Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with kinetin' unspecified PDB 4A86 ;Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in ternary complex with kinetin and 8-Anilinonaphthalene-1-sulfonate (ANS) ; unspecified PDB 4A87 'Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with naringenin.' unspecified PDB 4A8U 'Crystal Structure of native Birch Pollen Allergen Bet v 1 isoform j' unspecified PDB 4A8V 'Crystal Structure of Birch Pollen Allergen Bet v 1 isoform j in complex with 8-Anilinonaphthalene-1-sulfonate (ANS)' unspecified PDB 4GY9 ;Crystal structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-isopentenyladenine (2iP) 4JHG ; unspecified PDB 4JHG 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with trans-zeatin' unspecified PDB 4PSB 'Crystal Structure of Phytohormone Binding Protein from Vigna radiata in complex with gibberellic acid (GA3)' unspecified PDB 4JHH 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with kinetin' unspecified PDB 4JHI 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-benzyladenine' unspecified NDB 4N3E ;Crystal structure of Hyp-1, a St John's wort PR-10 protein, in complex with 8-anilino-1-naphthalene sulfonate (ANS) ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RYV _pdbx_database_status.recvd_initial_deposition_date 2014-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dolot, R.' 1 'Michalska, K.' 2 'Sliwiak, J.' 3 'Bujacz, G.' 4 'Sikorski, M.M.' 5 'Jaskolski, M.' 6 # _citation.id primary _citation.title 'Crystallographic and CD probing of ligand-induced conformational changes in a plant PR-10 protein.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 193 _citation.page_first 55 _citation.page_last 66 _citation.year 2016 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26644353 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2015.11.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sliwiak, J.' 1 primary 'Dolot, R.' 2 primary 'Michalska, K.' 3 primary 'Szpotkowski, K.' 4 primary 'Bujacz, G.' 5 primary 'Sikorski, M.' 6 primary 'Jaskolski, M.' 7 # _cell.entry_id 4RYV _cell.length_a 70.970 _cell.length_b 63.910 _cell.length_c 47.560 _cell.angle_alpha 90.00 _cell.angle_beta 126.68 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RYV _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein LLPR-10.1A' 16748.924 1 ? ? ? ? 2 non-polymer syn '(2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol' 219.243 5 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 221 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LlPR10.1A # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTY NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY ; _entity_poly.pdbx_seq_one_letter_code_can ;GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTY NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 PHE n 1 4 ALA n 1 5 PHE n 1 6 GLU n 1 7 ASN n 1 8 GLU n 1 9 GLN n 1 10 SER n 1 11 SER n 1 12 THR n 1 13 VAL n 1 14 ALA n 1 15 PRO n 1 16 ALA n 1 17 LYS n 1 18 LEU n 1 19 TYR n 1 20 LYS n 1 21 ALA n 1 22 LEU n 1 23 THR n 1 24 LYS n 1 25 ASP n 1 26 SER n 1 27 ASP n 1 28 GLU n 1 29 ILE n 1 30 VAL n 1 31 PRO n 1 32 LYS n 1 33 VAL n 1 34 ILE n 1 35 GLU n 1 36 PRO n 1 37 ILE n 1 38 GLN n 1 39 SER n 1 40 VAL n 1 41 GLU n 1 42 ILE n 1 43 VAL n 1 44 GLU n 1 45 GLY n 1 46 ASN n 1 47 GLY n 1 48 GLY n 1 49 PRO n 1 50 GLY n 1 51 THR n 1 52 ILE n 1 53 LYS n 1 54 LYS n 1 55 ILE n 1 56 ILE n 1 57 ALA n 1 58 ILE n 1 59 HIS n 1 60 ASP n 1 61 GLY n 1 62 HIS n 1 63 THR n 1 64 SER n 1 65 PHE n 1 66 VAL n 1 67 LEU n 1 68 HIS n 1 69 LYS n 1 70 LEU n 1 71 ASP n 1 72 ALA n 1 73 ILE n 1 74 ASP n 1 75 GLU n 1 76 ALA n 1 77 ASN n 1 78 LEU n 1 79 THR n 1 80 TYR n 1 81 ASN n 1 82 TYR n 1 83 SER n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 GLY n 1 88 GLU n 1 89 GLY n 1 90 LEU n 1 91 ASP n 1 92 GLU n 1 93 SER n 1 94 LEU n 1 95 GLU n 1 96 LYS n 1 97 ILE n 1 98 SER n 1 99 TYR n 1 100 GLU n 1 101 SER n 1 102 LYS n 1 103 ILE n 1 104 LEU n 1 105 PRO n 1 106 GLY n 1 107 PRO n 1 108 ASP n 1 109 GLY n 1 110 GLY n 1 111 SER n 1 112 ILE n 1 113 GLY n 1 114 LYS n 1 115 ILE n 1 116 ASN n 1 117 VAL n 1 118 LYS n 1 119 PHE n 1 120 HIS n 1 121 THR n 1 122 LYS n 1 123 GLY n 1 124 ASP n 1 125 VAL n 1 126 LEU n 1 127 SER n 1 128 GLU n 1 129 THR n 1 130 VAL n 1 131 ARG n 1 132 ASP n 1 133 GLN n 1 134 ALA n 1 135 LYS n 1 136 PHE n 1 137 LYS n 1 138 GLY n 1 139 LEU n 1 140 GLY n 1 141 LEU n 1 142 PHE n 1 143 LYS n 1 144 ALA n 1 145 ILE n 1 146 GLU n 1 147 GLY n 1 148 TYR n 1 149 VAL n 1 150 LEU n 1 151 ALA n 1 152 HIS n 1 153 PRO n 1 154 ASP n 1 155 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'European yellow lupin' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LLR18A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lupinus luteus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3873 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L18A_LUPLU _struct_ref.pdbx_db_accession P52778 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTY NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RYV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52778 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 156 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 155 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZEA non-polymer . '(2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol' TRANS-ZEATIN 'C10 H13 N5 O' 219.243 # _exptl.entry_id 4RYV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.8 M (NH4)2SO4, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-05-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE ASYMMETRICALLY CUT SI(111) CRYSTAL WITH HORIZONTAL DIFFRACTION PLANE' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0605 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength 1.0605 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RYV _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 99.000 _reflns.d_resolution_high 1.380 _reflns.number_obs 34754 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.05400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.7400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.38 _reflns_shell.d_res_low 1.43 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.20900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.480 _reflns_shell.pdbx_redundancy 3.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RYV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 33857 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.49 _refine.ls_d_res_high 1.38 _refine.ls_percent_reflns_obs 99.19 _refine.ls_R_factor_obs 0.14274 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14200 _refine.ls_R_factor_R_free 0.17013 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.6 _refine.ls_number_reflns_R_free 896 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 16.105 _refine.aniso_B[1][1] -0.72 _refine.aniso_B[2][2] -0.93 _refine.aniso_B[3][3] 1.57 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -1.12 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1ICX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.055 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.035 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.961 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1183 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 85 _refine_hist.number_atoms_solvent 221 _refine_hist.number_atoms_total 1489 _refine_hist.d_res_high 1.38 _refine_hist.d_res_low 42.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.019 ? 1362 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1291 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.987 2.046 ? 1852 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.888 3.000 ? 3004 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.543 5.000 ? 174 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.231 26.154 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 9.760 15.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1.912 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 197 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1544 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 282 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.415 1.171 ? 645 'X-RAY DIFFRACTION' ? r_mcbond_other 1.410 1.169 ? 644 'X-RAY DIFFRACTION' ? r_mcangle_it 1.633 1.774 ? 812 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.546 1.681 ? 717 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.782 3.000 ? 2652 'X-RAY DIFFRACTION' ? r_sphericity_free 45.271 5.000 ? 63 'X-RAY DIFFRACTION' ? r_sphericity_bonded 13.571 5.000 ? 2774 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.380 _refine_ls_shell.d_res_low 1.416 _refine_ls_shell.number_reflns_R_work 2482 _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.percent_reflns_obs 99.41 _refine_ls_shell.R_factor_R_free 0.227 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4RYV _struct.title 'Crystal structure of yellow lupin LLPR-10.1A protein in complex with trans-zeatin' _struct.pdbx_descriptor 'Protein LLPR-10.1A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RYV _struct_keywords.pdbx_keywords 'PLANT PROTEIN' _struct_keywords.text 'PR-10 FOLD, LIGAND BINDING, PHYTOHORMONE BINDING PROTEIN, TRANS-ZEATIN, CYTOKININ, PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 14 ? THR A 23 ? ALA A 14 THR A 23 1 ? 10 HELX_P HELX_P2 2 ASP A 25 ? ILE A 34 ? ASP A 25 ILE A 34 1 ? 10 HELX_P HELX_P3 3 GLU A 75 ? ASN A 77 ? GLU A 75 ASN A 77 5 ? 3 HELX_P HELX_P4 4 PRO A 107 ? GLY A 109 ? PRO A 107 GLY A 109 5 ? 3 HELX_P HELX_P5 5 SER A 127 ? HIS A 152 ? SER A 127 HIS A 152 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 2 ? SER A 11 ? ILE A 2 SER A 11 A 2 SER A 111 ? THR A 121 ? SER A 111 THR A 121 A 3 LEU A 94 ? PRO A 105 ? LEU A 94 PRO A 105 A 4 THR A 79 ? GLY A 86 ? THR A 79 GLY A 86 A 5 HIS A 62 ? ASP A 74 ? HIS A 62 ASP A 74 A 6 ILE A 52 ? HIS A 59 ? ILE A 52 HIS A 59 A 7 ILE A 37 ? GLU A 44 ? ILE A 37 GLU A 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 9 ? N GLN A 9 O GLY A 113 ? O GLY A 113 A 2 3 O ILE A 112 ? O ILE A 112 N LEU A 104 ? N LEU A 104 A 3 4 O TYR A 99 ? O TYR A 99 N TYR A 82 ? N TYR A 82 A 4 5 O ASN A 81 ? O ASN A 81 N ALA A 72 ? N ALA A 72 A 5 6 O HIS A 62 ? O HIS A 62 N HIS A 59 ? N HIS A 59 A 6 7 O LYS A 54 ? O LYS A 54 N GLU A 41 ? N GLU A 41 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE ZEA A 201' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE ZEA A 202' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE ZEA A 203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ZEA A 204' AC5 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE ZEA A 205' AC6 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 ASN A 7 ? ASN A 7 . ? 1_555 ? 2 AC1 15 GLN A 9 ? GLN A 9 . ? 1_555 ? 3 AC1 15 TYR A 19 ? TYR A 19 . ? 1_555 ? 4 AC1 15 LEU A 22 ? LEU A 22 . ? 1_555 ? 5 AC1 15 THR A 23 ? THR A 23 . ? 1_555 ? 6 AC1 15 TYR A 82 ? TYR A 82 . ? 1_555 ? 7 AC1 15 SER A 101 ? SER A 101 . ? 1_555 ? 8 AC1 15 GLY A 113 ? GLY A 113 . ? 1_555 ? 9 AC1 15 ILE A 115 ? ILE A 115 . ? 1_555 ? 10 AC1 15 GLY A 138 ? GLY A 138 . ? 1_555 ? 11 AC1 15 PHE A 142 ? PHE A 142 . ? 1_555 ? 12 AC1 15 ZEA C . ? ZEA A 202 . ? 1_555 ? 13 AC1 15 HOH H . ? HOH A 335 . ? 1_555 ? 14 AC1 15 HOH H . ? HOH A 343 . ? 1_555 ? 15 AC1 15 HOH H . ? HOH A 468 . ? 1_555 ? 16 AC2 11 PHE A 5 ? PHE A 5 . ? 1_555 ? 17 AC2 11 ASN A 7 ? ASN A 7 . ? 1_555 ? 18 AC2 11 VAL A 117 ? VAL A 117 . ? 1_555 ? 19 AC2 11 PHE A 119 ? PHE A 119 . ? 1_555 ? 20 AC2 11 ARG A 131 ? ARG A 131 . ? 1_555 ? 21 AC2 11 ASP A 132 ? ASP A 132 . ? 1_555 ? 22 AC2 11 LYS A 135 ? LYS A 135 . ? 1_555 ? 23 AC2 11 ZEA B . ? ZEA A 201 . ? 1_555 ? 24 AC2 11 HOH H . ? HOH A 312 . ? 1_555 ? 25 AC2 11 HOH H . ? HOH A 373 . ? 1_555 ? 26 AC2 11 HOH H . ? HOH A 399 . ? 1_555 ? 27 AC3 10 SER A 26 ? SER A 26 . ? 1_555 ? 28 AC3 10 ASP A 27 ? ASP A 27 . ? 1_555 ? 29 AC3 10 LYS A 53 ? LYS A 53 . ? 1_555 ? 30 AC3 10 ILE A 55 ? ILE A 55 . ? 1_555 ? 31 AC3 10 HIS A 68 ? HIS A 68 . ? 1_555 ? 32 AC3 10 TYR A 82 ? TYR A 82 . ? 1_555 ? 33 AC3 10 TYR A 99 ? TYR A 99 . ? 1_555 ? 34 AC3 10 LYS A 137 ? LYS A 137 . ? 1_555 ? 35 AC3 10 LEU A 141 ? LEU A 141 . ? 1_555 ? 36 AC3 10 HOH H . ? HOH A 494 . ? 1_555 ? 37 AC4 3 HIS A 62 ? HIS A 62 . ? 1_555 ? 38 AC4 3 THR A 63 ? THR A 63 . ? 1_555 ? 39 AC4 3 GLU A 88 ? GLU A 88 . ? 1_555 ? 40 AC5 13 VAL A 33 ? VAL A 33 . ? 2_555 ? 41 AC5 13 VAL A 33 ? VAL A 33 . ? 1_555 ? 42 AC5 13 ILE A 34 ? ILE A 34 . ? 1_555 ? 43 AC5 13 ILE A 34 ? ILE A 34 . ? 2_555 ? 44 AC5 13 GLY A 140 ? GLY A 140 . ? 1_555 ? 45 AC5 13 LYS A 143 ? LYS A 143 . ? 1_555 ? 46 AC5 13 ALA A 144 ? ALA A 144 . ? 1_555 ? 47 AC5 13 HOH H . ? HOH A 309 . ? 1_555 ? 48 AC5 13 HOH H . ? HOH A 477 . ? 1_555 ? 49 AC5 13 HOH H . ? HOH A 477 . ? 2_555 ? 50 AC5 13 HOH H . ? HOH A 485 . ? 1_555 ? 51 AC5 13 HOH H . ? HOH A 492 . ? 1_555 ? 52 AC5 13 HOH H . ? HOH A 495 . ? 1_555 ? 53 AC6 7 ASN A 7 ? ASN A 7 . ? 1_555 ? 54 AC6 7 GLN A 9 ? GLN A 9 . ? 1_555 ? 55 AC6 7 LYS A 135 ? LYS A 135 . ? 2_555 ? 56 AC6 7 PHE A 136 ? PHE A 136 . ? 2_555 ? 57 AC6 7 LEU A 139 ? LEU A 139 . ? 1_555 ? 58 AC6 7 HOH H . ? HOH A 418 . ? 2_555 ? 59 AC6 7 HOH H . ? HOH A 448 . ? 1_555 ? # _database_PDB_matrix.entry_id 4RYV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4RYV _atom_sites.fract_transf_matrix[1][1] 0.014090 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010495 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015647 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026218 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 PRO 153 153 153 PRO PRO A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 TYR 155 155 155 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZEA 1 201 201 ZEA ZEA A . C 2 ZEA 1 202 202 ZEA ZEA A . D 2 ZEA 1 203 203 ZEA ZEA A . E 2 ZEA 1 204 204 ZEA ZEA A . F 2 ZEA 1 205 205 ZEA ZEA A . G 3 SO4 1 206 206 SO4 SO4 A . H 4 HOH 1 301 301 HOH HOH A . H 4 HOH 2 302 302 HOH HOH A . H 4 HOH 3 303 303 HOH HOH A . H 4 HOH 4 304 304 HOH HOH A . H 4 HOH 5 305 305 HOH HOH A . H 4 HOH 6 306 306 HOH HOH A . H 4 HOH 7 307 307 HOH HOH A . H 4 HOH 8 308 308 HOH HOH A . H 4 HOH 9 309 309 HOH HOH A . H 4 HOH 10 310 310 HOH HOH A . H 4 HOH 11 311 311 HOH HOH A . H 4 HOH 12 312 312 HOH HOH A . H 4 HOH 13 313 313 HOH HOH A . H 4 HOH 14 314 314 HOH HOH A . H 4 HOH 15 315 315 HOH HOH A . H 4 HOH 16 316 316 HOH HOH A . H 4 HOH 17 317 317 HOH HOH A . H 4 HOH 18 318 318 HOH HOH A . H 4 HOH 19 319 319 HOH HOH A . H 4 HOH 20 320 320 HOH HOH A . H 4 HOH 21 321 321 HOH HOH A . H 4 HOH 22 322 322 HOH HOH A . H 4 HOH 23 323 323 HOH HOH A . H 4 HOH 24 324 324 HOH HOH A . H 4 HOH 25 325 325 HOH HOH A . H 4 HOH 26 326 326 HOH HOH A . H 4 HOH 27 327 327 HOH HOH A . H 4 HOH 28 328 328 HOH HOH A . H 4 HOH 29 329 329 HOH HOH A . H 4 HOH 30 330 330 HOH HOH A . H 4 HOH 31 331 331 HOH HOH A . H 4 HOH 32 332 332 HOH HOH A . H 4 HOH 33 333 333 HOH HOH A . H 4 HOH 34 334 334 HOH HOH A . H 4 HOH 35 335 335 HOH HOH A . H 4 HOH 36 336 336 HOH HOH A . H 4 HOH 37 337 337 HOH HOH A . H 4 HOH 38 338 338 HOH HOH A . H 4 HOH 39 339 339 HOH HOH A . H 4 HOH 40 340 340 HOH HOH A . H 4 HOH 41 341 341 HOH HOH A . H 4 HOH 42 342 342 HOH HOH A . H 4 HOH 43 343 343 HOH HOH A . H 4 HOH 44 344 344 HOH HOH A . H 4 HOH 45 345 345 HOH HOH A . H 4 HOH 46 346 346 HOH HOH A . H 4 HOH 47 347 347 HOH HOH A . H 4 HOH 48 348 348 HOH HOH A . H 4 HOH 49 349 349 HOH HOH A . H 4 HOH 50 350 350 HOH HOH A . H 4 HOH 51 351 351 HOH HOH A . H 4 HOH 52 352 352 HOH HOH A . H 4 HOH 53 353 353 HOH HOH A . H 4 HOH 54 354 354 HOH HOH A . H 4 HOH 55 355 355 HOH HOH A . H 4 HOH 56 356 356 HOH HOH A . H 4 HOH 57 357 357 HOH HOH A . H 4 HOH 58 358 358 HOH HOH A . H 4 HOH 59 359 359 HOH HOH A . H 4 HOH 60 360 360 HOH HOH A . H 4 HOH 61 361 361 HOH HOH A . H 4 HOH 62 362 362 HOH HOH A . H 4 HOH 63 363 363 HOH HOH A . H 4 HOH 64 364 364 HOH HOH A . H 4 HOH 65 365 365 HOH HOH A . H 4 HOH 66 366 366 HOH HOH A . H 4 HOH 67 367 367 HOH HOH A . H 4 HOH 68 368 368 HOH HOH A . H 4 HOH 69 369 369 HOH HOH A . H 4 HOH 70 370 370 HOH HOH A . H 4 HOH 71 371 371 HOH HOH A . H 4 HOH 72 372 372 HOH HOH A . H 4 HOH 73 373 373 HOH HOH A . H 4 HOH 74 374 374 HOH HOH A . H 4 HOH 75 375 375 HOH HOH A . H 4 HOH 76 376 376 HOH HOH A . H 4 HOH 77 377 377 HOH HOH A . H 4 HOH 78 378 378 HOH HOH A . H 4 HOH 79 379 379 HOH HOH A . H 4 HOH 80 380 380 HOH HOH A . H 4 HOH 81 381 381 HOH HOH A . H 4 HOH 82 382 382 HOH HOH A . H 4 HOH 83 383 383 HOH HOH A . H 4 HOH 84 384 384 HOH HOH A . H 4 HOH 85 385 385 HOH HOH A . H 4 HOH 86 386 386 HOH HOH A . H 4 HOH 87 387 387 HOH HOH A . H 4 HOH 88 388 388 HOH HOH A . H 4 HOH 89 389 389 HOH HOH A . H 4 HOH 90 390 390 HOH HOH A . H 4 HOH 91 391 391 HOH HOH A . H 4 HOH 92 392 392 HOH HOH A . H 4 HOH 93 393 393 HOH HOH A . H 4 HOH 94 394 394 HOH HOH A . H 4 HOH 95 395 395 HOH HOH A . H 4 HOH 96 396 396 HOH HOH A . H 4 HOH 97 397 397 HOH HOH A . H 4 HOH 98 398 398 HOH HOH A . H 4 HOH 99 399 399 HOH HOH A . H 4 HOH 100 400 400 HOH HOH A . H 4 HOH 101 401 401 HOH HOH A . H 4 HOH 102 402 402 HOH HOH A . H 4 HOH 103 403 403 HOH HOH A . H 4 HOH 104 404 404 HOH HOH A . H 4 HOH 105 405 405 HOH HOH A . H 4 HOH 106 406 406 HOH HOH A . H 4 HOH 107 407 407 HOH HOH A . H 4 HOH 108 408 408 HOH HOH A . H 4 HOH 109 409 409 HOH HOH A . H 4 HOH 110 410 410 HOH HOH A . H 4 HOH 111 411 411 HOH HOH A . H 4 HOH 112 412 412 HOH HOH A . H 4 HOH 113 413 413 HOH HOH A . H 4 HOH 114 414 414 HOH HOH A . H 4 HOH 115 415 415 HOH HOH A . H 4 HOH 116 416 416 HOH HOH A . H 4 HOH 117 417 417 HOH HOH A . H 4 HOH 118 418 418 HOH HOH A . H 4 HOH 119 419 419 HOH HOH A . H 4 HOH 120 420 420 HOH HOH A . H 4 HOH 121 421 421 HOH HOH A . H 4 HOH 122 422 422 HOH HOH A . H 4 HOH 123 423 423 HOH HOH A . H 4 HOH 124 424 424 HOH HOH A . H 4 HOH 125 425 425 HOH HOH A . H 4 HOH 126 426 426 HOH HOH A . H 4 HOH 127 427 427 HOH HOH A . H 4 HOH 128 428 428 HOH HOH A . H 4 HOH 129 429 429 HOH HOH A . H 4 HOH 130 430 430 HOH HOH A . H 4 HOH 131 431 431 HOH HOH A . H 4 HOH 132 432 432 HOH HOH A . H 4 HOH 133 433 433 HOH HOH A . H 4 HOH 134 434 434 HOH HOH A . H 4 HOH 135 435 435 HOH HOH A . H 4 HOH 136 436 436 HOH HOH A . H 4 HOH 137 437 437 HOH HOH A . H 4 HOH 138 438 438 HOH HOH A . H 4 HOH 139 439 439 HOH HOH A . H 4 HOH 140 440 440 HOH HOH A . H 4 HOH 141 441 441 HOH HOH A . H 4 HOH 142 442 442 HOH HOH A . H 4 HOH 143 443 443 HOH HOH A . H 4 HOH 144 444 444 HOH HOH A . H 4 HOH 145 445 445 HOH HOH A . H 4 HOH 146 446 446 HOH HOH A . H 4 HOH 147 447 447 HOH HOH A . H 4 HOH 148 448 448 HOH HOH A . H 4 HOH 149 449 449 HOH HOH A . H 4 HOH 150 450 450 HOH HOH A . H 4 HOH 151 451 451 HOH HOH A . H 4 HOH 152 452 452 HOH HOH A . H 4 HOH 153 453 453 HOH HOH A . H 4 HOH 154 454 454 HOH HOH A . H 4 HOH 155 455 455 HOH HOH A . H 4 HOH 156 456 456 HOH HOH A . H 4 HOH 157 457 457 HOH HOH A . H 4 HOH 158 458 458 HOH HOH A . H 4 HOH 159 459 459 HOH HOH A . H 4 HOH 160 460 460 HOH HOH A . H 4 HOH 161 461 461 HOH HOH A . H 4 HOH 162 462 462 HOH HOH A . H 4 HOH 163 463 463 HOH HOH A . H 4 HOH 164 464 464 HOH HOH A . H 4 HOH 165 465 465 HOH HOH A . H 4 HOH 166 466 466 HOH HOH A . H 4 HOH 167 467 467 HOH HOH A . H 4 HOH 168 468 468 HOH HOH A . H 4 HOH 169 469 469 HOH HOH A . H 4 HOH 170 470 470 HOH HOH A . H 4 HOH 171 471 471 HOH HOH A . H 4 HOH 172 472 472 HOH HOH A . H 4 HOH 173 473 473 HOH HOH A . H 4 HOH 174 474 474 HOH HOH A . H 4 HOH 175 475 475 HOH HOH A . H 4 HOH 176 476 476 HOH HOH A . H 4 HOH 177 477 477 HOH HOH A . H 4 HOH 178 478 478 HOH HOH A . H 4 HOH 179 479 479 HOH HOH A . H 4 HOH 180 480 480 HOH HOH A . H 4 HOH 181 481 481 HOH HOH A . H 4 HOH 182 482 482 HOH HOH A . H 4 HOH 183 483 483 HOH HOH A . H 4 HOH 184 484 484 HOH HOH A . H 4 HOH 185 485 485 HOH HOH A . H 4 HOH 186 486 486 HOH HOH A . H 4 HOH 187 487 487 HOH HOH A . H 4 HOH 188 488 488 HOH HOH A . H 4 HOH 189 489 489 HOH HOH A . H 4 HOH 190 490 490 HOH HOH A . H 4 HOH 191 491 491 HOH HOH A . H 4 HOH 192 492 492 HOH HOH A . H 4 HOH 193 493 493 HOH HOH A . H 4 HOH 194 494 494 HOH HOH A . H 4 HOH 195 495 495 HOH HOH A . H 4 HOH 196 496 496 HOH HOH A . H 4 HOH 197 497 497 HOH HOH A . H 4 HOH 198 498 498 HOH HOH A . H 4 HOH 199 499 499 HOH HOH A . H 4 HOH 200 500 500 HOH HOH A . H 4 HOH 201 501 501 HOH HOH A . H 4 HOH 202 502 502 HOH HOH A . H 4 HOH 203 503 503 HOH HOH A . H 4 HOH 204 504 504 HOH HOH A . H 4 HOH 205 505 505 HOH HOH A . H 4 HOH 206 506 506 HOH HOH A . H 4 HOH 207 507 507 HOH HOH A . H 4 HOH 208 508 508 HOH HOH A . H 4 HOH 209 509 509 HOH HOH A . H 4 HOH 210 510 510 HOH HOH A . H 4 HOH 211 511 511 HOH HOH A . H 4 HOH 212 512 512 HOH HOH A . H 4 HOH 213 513 513 HOH HOH A . H 4 HOH 214 514 514 HOH HOH A . H 4 HOH 215 515 515 HOH HOH A . H 4 HOH 216 516 516 HOH HOH A . H 4 HOH 217 517 517 HOH HOH A . H 4 HOH 218 518 518 HOH HOH A . H 4 HOH 219 519 519 HOH HOH A . H 4 HOH 220 520 520 HOH HOH A . H 4 HOH 221 521 521 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1510 ? 2 MORE -11.6 ? 2 'SSA (A^2)' 16150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 487 ? H HOH . 2 1 A HOH 519 ? H HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-09 2 'Structure model' 1 1 2015-12-23 3 'Structure model' 1 2 2016-01-13 4 'Structure model' 1 3 2018-03-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal IS4CCDI 'data collection' . ? 1 MOLREP phasing 10.2.31 ? 2 REFMAC refinement 5.5.0109 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 23 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -120.86 _pdbx_validate_torsion.psi -87.28 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol' ZEA 3 'SULFATE ION' SO4 4 water HOH #