HEADER VIRAL PROTEIN 18-DEC-14 4RZ8 TITLE CRYSTAL STRUCTURE OF HIV-1 GP120 CORE IN COMPLEX WITH NBD-11021, A TITLE 2 SMALL MOLECULE CD4-ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 43-122, 201-303, 325-486; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: CLADE A/E 93TH057; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1 GP120, NBD-11021, SMALL MOLECULE CD4-ANTAGONIST, PHE 43 CAVITY, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,A.K.DEBNATH,P.D.KWONG REVDAT 5 20-SEP-23 4RZ8 1 HETSYN REVDAT 4 29-JUL-20 4RZ8 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 02-AUG-17 4RZ8 1 SOURCE REMARK REVDAT 2 23-SEP-15 4RZ8 1 JRNL REVDAT 1 09-SEP-15 4RZ8 0 JRNL AUTH F.CURRELI,Y.D.KWON,H.ZHANG,D.SCACALOSSI,D.S.BELOV, JRNL AUTH 2 A.A.TIKHONOV,I.A.ANDREEV,A.ALTIERI,A.V.KURKIN,P.D.KWONG, JRNL AUTH 3 A.K.DEBNATH JRNL TITL STRUCTURE-BASED DESIGN OF A SMALL MOLECULE CD4-ANTAGONIST JRNL TITL 2 WITH BROAD SPECTRUM ANTI-HIV-1 ACTIVITY. JRNL REF J.MED.CHEM. V. 58 6909 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26301736 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00709 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1839) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 124366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0388 - 4.5777 0.96 9189 144 0.2019 0.2215 REMARK 3 2 4.5777 - 3.6340 0.99 9279 143 0.1865 0.1710 REMARK 3 3 3.6340 - 3.1748 0.99 9278 144 0.2174 0.2555 REMARK 3 4 3.1748 - 2.8846 1.00 9302 136 0.2416 0.2429 REMARK 3 5 2.8846 - 2.6778 1.00 9318 149 0.2526 0.2634 REMARK 3 6 2.6778 - 2.5200 1.00 9285 140 0.2524 0.2849 REMARK 3 7 2.5200 - 2.3938 1.00 9307 143 0.2623 0.3069 REMARK 3 8 2.3938 - 2.2896 1.00 9231 137 0.2605 0.3054 REMARK 3 9 2.2896 - 2.2015 0.99 9252 150 0.2609 0.2758 REMARK 3 10 2.2015 - 2.1255 0.98 9128 143 0.2717 0.3035 REMARK 3 11 2.1255 - 2.0590 0.94 8721 133 0.2789 0.3077 REMARK 3 12 2.0590 - 2.0002 0.87 8058 123 0.2855 0.3395 REMARK 3 13 2.0002 - 1.9475 0.78 7273 113 0.2915 0.2996 REMARK 3 14 1.9475 - 1.9000 0.64 5849 98 0.2990 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 11619 REMARK 3 ANGLE : 0.448 15805 REMARK 3 CHIRALITY : 0.021 1865 REMARK 3 PLANARITY : 0.002 1997 REMARK 3 DIHEDRAL : 9.040 4207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 44:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5797 -3.2999 43.1081 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.4700 REMARK 3 T33: 0.5604 T12: 0.0512 REMARK 3 T13: 0.0699 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 3.2185 L22: 3.2191 REMARK 3 L33: 4.3948 L12: -0.7865 REMARK 3 L13: -0.1172 L23: -0.4770 REMARK 3 S TENSOR REMARK 3 S11: -0.1303 S12: -0.7901 S13: 0.1202 REMARK 3 S21: 0.0807 S22: 0.2756 S23: -0.2910 REMARK 3 S31: 0.2360 S32: 0.5101 S33: -0.1423 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2989 19.0017 43.2867 REMARK 3 T TENSOR REMARK 3 T11: 0.5402 T22: 0.5118 REMARK 3 T33: 1.1738 T12: -0.0988 REMARK 3 T13: 0.2355 T23: -0.4693 REMARK 3 L TENSOR REMARK 3 L11: 2.7452 L22: 2.3839 REMARK 3 L33: 2.7663 L12: -0.4734 REMARK 3 L13: -0.2845 L23: -0.9423 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: -0.8062 S13: 1.4136 REMARK 3 S21: 0.3038 S22: 0.3424 S23: -0.3414 REMARK 3 S31: -0.7689 S32: 0.1933 S33: -0.0997 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 44:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1392 31.1296 12.6934 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.4276 REMARK 3 T33: 0.6643 T12: -0.0659 REMARK 3 T13: 0.1011 T23: -0.0720 REMARK 3 L TENSOR REMARK 3 L11: 2.5724 L22: 2.3835 REMARK 3 L33: 4.1155 L12: 0.4837 REMARK 3 L13: 0.1053 L23: 0.6360 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.5969 S13: -0.2274 REMARK 3 S21: 0.0852 S22: 0.0224 S23: 0.5302 REMARK 3 S31: 0.3694 S32: -0.5686 S33: 0.0790 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESI 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4629 53.0666 12.7677 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 0.3614 REMARK 3 T33: 0.8492 T12: 0.0592 REMARK 3 T13: 0.1598 T23: 0.1691 REMARK 3 L TENSOR REMARK 3 L11: 2.8149 L22: 2.4332 REMARK 3 L33: 3.8495 L12: 0.1458 REMARK 3 L13: -0.4704 L23: 0.4608 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: 0.5486 S13: 0.8077 REMARK 3 S21: -0.0504 S22: 0.2120 S23: 0.4364 REMARK 3 S31: -0.8690 S32: -0.2103 S33: -0.2385 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C AND (RESID 44:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8498 12.3254 20.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.2758 REMARK 3 T33: 0.2513 T12: 0.0163 REMARK 3 T13: -0.0928 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.4179 L22: 4.6079 REMARK 3 L33: 1.7839 L12: 1.3048 REMARK 3 L13: 0.6317 L23: 0.8633 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: -0.0695 S13: -0.4408 REMARK 3 S21: 0.0492 S22: -0.0269 S23: -0.2881 REMARK 3 S31: 0.2262 S32: 0.0161 S33: -0.1746 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN C AND RESI 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): 60.7899 34.5582 17.0868 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.2752 REMARK 3 T33: 0.1961 T12: -0.0339 REMARK 3 T13: -0.0044 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 4.0754 L22: 2.3966 REMARK 3 L33: 1.2875 L12: 0.6850 REMARK 3 L13: 0.8880 L23: 0.5506 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: 0.2342 S13: 0.2284 REMARK 3 S21: -0.0941 S22: 0.0211 S23: -0.0815 REMARK 3 S31: -0.1340 S32: 0.2390 S33: -0.1049 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN D AND (RESID 44:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8062 12.3656 -33.6153 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2457 REMARK 3 T33: 0.1708 T12: 0.0531 REMARK 3 T13: -0.0675 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 3.7652 L22: 3.7623 REMARK 3 L33: 1.7669 L12: 0.3133 REMARK 3 L13: -0.4977 L23: -0.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.1659 S13: -0.1334 REMARK 3 S21: -0.1245 S22: -0.1248 S23: 0.1096 REMARK 3 S31: 0.1545 S32: 0.0195 S33: 0.0505 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN D AND RESI 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9288 34.5027 -37.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.2404 REMARK 3 T33: 0.2255 T12: 0.0252 REMARK 3 T13: 0.0046 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 4.3169 L22: 2.5394 REMARK 3 L33: 0.8835 L12: 0.4793 REMARK 3 L13: 0.1000 L23: -0.4171 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: 0.1223 S13: 0.4578 REMARK 3 S21: -0.0316 S22: -0.0894 S23: 0.1087 REMARK 3 S31: -0.1849 S32: 0.0824 S33: -0.0837 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 28.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : 0.89600 REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ID: 3TGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 5% ISO-PROPANOL, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.42100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 THR A 406 REMARK 465 MET A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 CYS A 410 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 GLY B 323 REMARK 465 ASN B 398 REMARK 465 ASN B 399 REMARK 465 THR B 400 REMARK 465 CYS B 401 REMARK 465 ILE B 402 REMARK 465 GLY B 403 REMARK 465 ASN B 404 REMARK 465 GLU B 405 REMARK 465 THR B 406 REMARK 465 MET B 407 REMARK 465 LYS B 408 REMARK 465 GLY B 409 REMARK 465 CYS B 410 REMARK 465 GLY C 318 REMARK 465 GLY C 319 REMARK 465 SER C 320 REMARK 465 GLY C 321 REMARK 465 SER C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 403 REMARK 465 ASN C 404 REMARK 465 GLU C 405 REMARK 465 THR C 406 REMARK 465 MET C 407 REMARK 465 LYS C 408 REMARK 465 GLY C 409 REMARK 465 CYS C 410 REMARK 465 GLY D 318 REMARK 465 GLY D 319 REMARK 465 SER D 320 REMARK 465 GLY D 321 REMARK 465 SER D 322 REMARK 465 GLY D 323 REMARK 465 GLY D 403 REMARK 465 ASN D 404 REMARK 465 GLU D 405 REMARK 465 THR D 406 REMARK 465 MET D 407 REMARK 465 LYS D 408 REMARK 465 GLY D 409 REMARK 465 CYS D 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H101 3ZM D 512 O HOH D 830 1.43 REMARK 500 O HOH D 779 O HOH D 788 1.87 REMARK 500 O HOH D 807 O HOH D 810 1.88 REMARK 500 O HOH A 678 O HOH A 680 1.88 REMARK 500 O HOH D 729 O HOH D 737 1.90 REMARK 500 O HOH D 767 O HOH D 780 1.91 REMARK 500 O HOH B 715 O HOH B 716 1.95 REMARK 500 O HOH D 684 O HOH D 700 1.96 REMARK 500 O PRO A 437 O HOH A 653 1.96 REMARK 500 O THR B 77 O HOH B 629 1.98 REMARK 500 OE2 GLU D 83 O HOH D 734 1.99 REMARK 500 O HOH A 659 O HOH A 666 1.99 REMARK 500 O HOH C 647 O HOH C 776 2.01 REMARK 500 O4 NAG C 507 O HOH C 749 2.02 REMARK 500 O HOH D 800 O HOH D 838 2.02 REMARK 500 O HOH D 685 O HOH D 826 2.03 REMARK 500 NZ LYS A 340 O HOH A 672 2.04 REMARK 500 O HOH B 647 O HOH B 691 2.04 REMARK 500 O HOH A 673 O HOH A 690 2.05 REMARK 500 NH2 ARG D 480 O HOH D 805 2.05 REMARK 500 O THR A 71 O HOH A 683 2.07 REMARK 500 O HOH C 721 O HOH C 722 2.07 REMARK 500 O HOH D 747 O HOH D 808 2.07 REMARK 500 ND2 ASN C 461 O HOH C 806 2.07 REMARK 500 O CYS B 119 O HOH B 725 2.07 REMARK 500 NH2 ARG C 480 O HOH C 764 2.10 REMARK 500 N GLU A 267 O HOH A 630 2.12 REMARK 500 N ASN B 98 O HOH B 701 2.12 REMARK 500 O HOH D 761 O HOH D 784 2.12 REMARK 500 NZ LYS A 421 O HOH A 690 2.13 REMARK 500 O HOH C 726 O HOH C 745 2.13 REMARK 500 O HOH C 758 O HOH C 759 2.13 REMARK 500 O HOH D 841 O HOH D 842 2.13 REMARK 500 N SER B 274 O HOH B 667 2.13 REMARK 500 O PRO C 438 O HOH C 678 2.14 REMARK 500 OG1 THR C 415 O HOH C 638 2.14 REMARK 500 O ASN B 289 O HOH B 668 2.15 REMARK 500 O4 NAG C 503 O HOH C 627 2.15 REMARK 500 O HOH D 815 O HOH D 842 2.15 REMARK 500 O HOH D 750 O HOH D 752 2.16 REMARK 500 O HOH D 718 O HOH D 791 2.16 REMARK 500 OG1 THR D 90 O HOH D 772 2.16 REMARK 500 NH1 ARG D 379 O HOH D 630 2.17 REMARK 500 O HOH D 814 O HOH D 825 2.18 REMARK 500 O HOH C 727 O HOH C 750 2.19 REMARK 500 O7 NAG C 505 O HOH C 737 2.19 REMARK 500 OE1 GLU C 106 O HOH C 684 2.19 REMARK 500 N ASN B 94 O HOH B 653 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 88 14.90 59.88 REMARK 500 LEU A 116 73.22 -102.08 REMARK 500 ASP A 211 103.57 -166.08 REMARK 500 GLN A 258 -62.58 63.08 REMARK 500 GLU A 268 -116.98 -105.55 REMARK 500 ASN A 393 96.45 -66.47 REMARK 500 THR A 394 -55.99 -123.96 REMARK 500 LEU B 116 70.23 -110.37 REMARK 500 ASP B 211 105.97 -165.32 REMARK 500 GLN B 258 -62.23 64.37 REMARK 500 GLU B 268 -98.43 -118.85 REMARK 500 ASN B 276 91.09 -163.34 REMARK 500 ASP C 211 102.00 -170.42 REMARK 500 GLN C 258 -58.44 67.40 REMARK 500 GLU C 268 -107.60 -120.19 REMARK 500 ASN C 276 96.14 -163.53 REMARK 500 SER D 115 -67.36 -104.84 REMARK 500 ASP D 211 102.74 -168.48 REMARK 500 GLN D 258 -60.98 66.28 REMARK 500 GLU D 268 -102.96 -107.77 REMARK 500 ASN D 276 102.24 -163.66 REMARK 500 PHE D 391 70.69 -100.10 REMARK 500 CYS D 395 38.67 -98.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 4RZ8 A 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4RZ8 A 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4RZ8 A 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 DBREF 4RZ8 B 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4RZ8 B 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4RZ8 B 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 DBREF 4RZ8 C 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4RZ8 C 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4RZ8 C 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 DBREF 4RZ8 D 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4RZ8 D 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4RZ8 D 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 SEQADV 4RZ8 GLY A 124 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY A 198 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY A 318 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY A 319 UNP Q0ED31 LINKER SEQADV 4RZ8 SER A 320 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY A 321 UNP Q0ED31 LINKER SEQADV 4RZ8 SER A 322 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY A 323 UNP Q0ED31 LINKER SEQADV 4RZ8 SER A 375 UNP Q0ED31 HIS 375 ENGINEERED MUTATION SEQADV 4RZ8 GLY B 124 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY B 198 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY B 318 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY B 319 UNP Q0ED31 LINKER SEQADV 4RZ8 SER B 320 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY B 321 UNP Q0ED31 LINKER SEQADV 4RZ8 SER B 322 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY B 323 UNP Q0ED31 LINKER SEQADV 4RZ8 SER B 375 UNP Q0ED31 HIS 375 ENGINEERED MUTATION SEQADV 4RZ8 GLY C 124 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY C 198 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY C 318 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY C 319 UNP Q0ED31 LINKER SEQADV 4RZ8 SER C 320 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY C 321 UNP Q0ED31 LINKER SEQADV 4RZ8 SER C 322 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY C 323 UNP Q0ED31 LINKER SEQADV 4RZ8 SER C 375 UNP Q0ED31 HIS 375 ENGINEERED MUTATION SEQADV 4RZ8 GLY D 124 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY D 198 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY D 318 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY D 319 UNP Q0ED31 LINKER SEQADV 4RZ8 SER D 320 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY D 321 UNP Q0ED31 LINKER SEQADV 4RZ8 SER D 322 UNP Q0ED31 LINKER SEQADV 4RZ8 GLY D 323 UNP Q0ED31 LINKER SEQADV 4RZ8 SER D 375 UNP Q0ED31 HIS 375 ENGINEERED MUTATION SEQRES 1 A 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 A 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 A 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 A 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 A 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 A 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 A 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 A 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 A 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 A 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 A 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 A 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 A 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 A 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 A 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 A 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 A 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 A 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 A 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 A 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 A 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 A 353 ILE GLU SEQRES 1 B 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 B 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 B 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 B 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 B 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 B 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 B 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 B 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 B 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 B 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 B 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 B 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 B 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 B 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 B 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 B 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 B 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 B 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 B 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 B 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 B 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 B 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 B 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 B 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 B 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 B 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 B 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 B 353 ILE GLU SEQRES 1 C 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 C 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 C 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 C 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 C 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 C 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 C 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 C 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 C 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 C 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 C 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 C 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 C 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 C 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 C 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 C 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 C 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 C 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 C 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 C 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 C 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 C 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 C 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 C 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 C 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 C 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 C 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 C 353 ILE GLU SEQRES 1 D 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 D 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 D 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 D 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 D 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 D 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 D 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 D 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 D 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 D 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 D 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 D 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 D 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 D 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 D 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 D 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 D 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 D 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 D 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 D 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 D 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 D 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 D 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 D 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 D 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 D 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 D 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 D 353 ILE GLU MODRES 4RZ8 ASN C 334 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 448 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 355 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 448 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 448 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 355 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 386 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 334 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 392 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 295 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 295 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 448 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 295 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 262 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 392 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 241 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 295 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 289 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 386 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 289 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 262 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 241 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 386 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 262 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 276 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 289 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 386 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 262 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 276 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 276 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 241 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN D 234 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 234 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 334 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 241 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 289 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN C 276 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 234 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN B 334 ASN GLYCOSYLATION SITE MODRES 4RZ8 ASN A 234 ASN GLYCOSYLATION SITE HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET NAG A 509 14 HET 3ZM A 510 55 HET EPE A 511 15 HET NAG B 501 14 HET NAG B 502 14 HET NAG B 503 14 HET NAG B 504 14 HET NAG B 505 14 HET NAG B 506 14 HET NAG B 507 14 HET NAG B 508 14 HET NAG B 509 14 HET 3ZM B 510 55 HET EPE B 511 15 HET NAG C 501 14 HET NAG C 502 14 HET NAG C 503 14 HET NAG C 504 14 HET NAG C 505 14 HET NAG C 506 14 HET NAG C 507 14 HET NAG C 508 14 HET NAG C 509 14 HET NAG C 510 14 HET NAG C 511 14 HET 3ZM C 512 55 HET EPE C 513 15 HET NAG D 501 14 HET NAG D 502 14 HET NAG D 503 14 HET NAG D 504 14 HET NAG D 505 14 HET NAG D 506 14 HET NAG D 507 14 HET NAG D 508 14 HET NAG D 509 14 HET NAG D 510 14 HET NAG D 511 14 HET 3ZM D 512 55 HET EPE D 513 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 3ZM 5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL- HETNAM 2 3ZM 1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H- HETNAM 3 3ZM PYRROLE-2-CARBOXAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EPE HEPES FORMUL 5 NAG 40(C8 H15 N O6) FORMUL 14 3ZM 4(C22 H25 CL N4 O2 S) FORMUL 15 EPE 4(C8 H18 N2 O4 S) FORMUL 53 HOH *692(H2 O) HELIX 1 1 GLU A 64 ALA A 73 1 10 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 GLY A 335 PHE A 353 1 19 HELIX 4 4 ASP A 368 MET A 373 1 6 HELIX 5 5 ILE A 475 SER A 481 1 7 HELIX 6 6 GLU B 64 ALA B 73 1 10 HELIX 7 7 ASN B 98 LEU B 116 1 19 HELIX 8 8 GLY B 335 PHE B 353 1 19 HELIX 9 9 ASP B 368 MET B 373 1 6 HELIX 10 10 ILE B 475 TYR B 484 1 10 HELIX 11 11 GLU C 64 ALA C 73 1 10 HELIX 12 12 ASN C 98 LEU C 116 1 19 HELIX 13 13 GLY C 335 PHE C 353 1 19 HELIX 14 14 ASP C 368 MET C 373 1 6 HELIX 15 15 ASN C 392 ILE C 396 5 5 HELIX 16 16 ILE C 475 TYR C 484 1 10 HELIX 17 17 GLU D 64 ALA D 73 1 10 HELIX 18 18 ASN D 98 LEU D 116 1 19 HELIX 19 19 GLY D 335 PHE D 353 1 19 HELIX 20 20 ASP D 368 MET D 373 1 6 HELIX 21 21 ASN D 392 ILE D 396 5 5 HELIX 22 22 ILE D 475 TYR D 484 1 10 SHEET 1 A 5 TRP A 45 ASP A 47 0 SHEET 2 A 5 TYR A 486 ILE A 491 -1 O GLN A 490 N LYS A 46 SHEET 3 A 5 TYR A 223 CYS A 228 -1 N LEU A 226 O LYS A 487 SHEET 4 A 5 VAL A 242 VAL A 245 -1 O SER A 243 N LYS A 227 SHEET 5 A 5 GLU A 83 HIS A 85 -1 N ILE A 84 O SER A 244 SHEET 1 B 3 CYS A 74 PRO A 76 0 SHEET 2 B 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 B 3 HIS A 216 CYS A 218 -1 O HIS A 216 N ALA A 55 SHEET 1 C 2 GLU A 91 ASN A 94 0 SHEET 2 C 2 THR A 236 CYS A 239 -1 O GLY A 237 N PHE A 93 SHEET 1 D 4 VAL A 200 LYS A 202 0 SHEET 2 D 4 VAL A 120 LEU A 122 -1 N LYS A 121 O ILE A 201 SHEET 3 D 4 GLN A 432 MET A 434 -1 O MET A 434 N VAL A 120 SHEET 4 D 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 E 5 LEU A 259 LEU A 261 0 SHEET 2 E 5 ILE A 443 ARG A 456 -1 O GLY A 451 N LEU A 260 SHEET 3 E 5 ILE A 284 ARG A 298 -1 N ARG A 298 O ILE A 443 SHEET 4 E 5 ASN A 465 PRO A 470 0 SHEET 5 E 5 THR A 358 PHE A 361 1 N ILE A 360 O PHE A 468 SHEET 1 F 7 ILE A 271 ARG A 273 0 SHEET 2 F 7 ILE A 284 ARG A 298 -1 O ILE A 285 N ARG A 273 SHEET 3 F 7 ILE A 443 ARG A 456 -1 O ILE A 443 N ARG A 298 SHEET 4 F 7 LYS A 328 ASN A 334 0 SHEET 5 F 7 THR A 413 ILE A 420 -1 O ILE A 414 N ILE A 333 SHEET 6 F 7 GLU A 381 CYS A 385 -1 N TYR A 384 O LYS A 419 SHEET 7 F 7 HIS A 374 CYS A 378 -1 N CYS A 378 O GLU A 381 SHEET 1 G 5 TRP B 45 ASP B 47 0 SHEET 2 G 5 TYR B 486 ILE B 491 -1 O GLN B 490 N LYS B 46 SHEET 3 G 5 TYR B 223 CYS B 228 -1 N LEU B 226 O LYS B 487 SHEET 4 G 5 VAL B 242 VAL B 245 -1 O SER B 243 N LYS B 227 SHEET 5 G 5 GLU B 83 HIS B 85 -1 N ILE B 84 O SER B 244 SHEET 1 H 3 CYS B 74 PRO B 76 0 SHEET 2 H 3 PHE B 53 SER B 56 1 N CYS B 54 O VAL B 75 SHEET 3 H 3 HIS B 216 CYS B 218 -1 O HIS B 216 N ALA B 55 SHEET 1 I 2 GLU B 91 ASN B 94 0 SHEET 2 I 2 THR B 236 CYS B 239 -1 O GLY B 237 N PHE B 93 SHEET 1 J 4 VAL B 200 LYS B 202 0 SHEET 2 J 4 VAL B 120 LEU B 122 -1 N LYS B 121 O ILE B 201 SHEET 3 J 4 GLN B 432 MET B 434 -1 O MET B 434 N VAL B 120 SHEET 4 J 4 ILE B 423 ASN B 425 -1 N ILE B 424 O ALA B 433 SHEET 1 K 5 LEU B 259 LEU B 261 0 SHEET 2 K 5 ILE B 443 ARG B 456 -1 O GLY B 451 N LEU B 260 SHEET 3 K 5 ILE B 284 ARG B 298 -1 N ARG B 298 O ILE B 443 SHEET 4 K 5 ASN B 465 PRO B 470 0 SHEET 5 K 5 THR B 358 PHE B 361 1 N ILE B 360 O PHE B 468 SHEET 1 L 7 ILE B 271 ARG B 273 0 SHEET 2 L 7 ILE B 284 ARG B 298 -1 O ILE B 285 N ARG B 273 SHEET 3 L 7 ILE B 443 ARG B 456 -1 O ILE B 443 N ARG B 298 SHEET 4 L 7 LYS B 328 ASN B 334 0 SHEET 5 L 7 THR B 413 ILE B 420 -1 O CYS B 418 N ALA B 329 SHEET 6 L 7 GLU B 381 CYS B 385 -1 N TYR B 384 O LYS B 419 SHEET 7 L 7 HIS B 374 CYS B 378 -1 N CYS B 378 O GLU B 381 SHEET 1 M 5 TRP C 45 ASP C 47 0 SHEET 2 M 5 TYR C 486 ILE C 491 -1 O GLN C 490 N LYS C 46 SHEET 3 M 5 TYR C 223 CYS C 228 -1 N LEU C 226 O LYS C 487 SHEET 4 M 5 VAL C 242 VAL C 245 -1 O SER C 243 N LYS C 227 SHEET 5 M 5 GLU C 83 LEU C 86 -1 N ILE C 84 O SER C 244 SHEET 1 N 3 CYS C 74 PRO C 76 0 SHEET 2 N 3 PHE C 53 SER C 56 1 N CYS C 54 O VAL C 75 SHEET 3 N 3 HIS C 216 CYS C 218 -1 O HIS C 216 N ALA C 55 SHEET 1 O 2 GLU C 91 ASN C 94 0 SHEET 2 O 2 THR C 236 CYS C 239 -1 O GLY C 237 N PHE C 93 SHEET 1 P 4 VAL C 200 LYS C 202 0 SHEET 2 P 4 VAL C 120 LEU C 122 -1 N LYS C 121 O ILE C 201 SHEET 3 P 4 GLN C 432 MET C 434 -1 O MET C 434 N VAL C 120 SHEET 4 P 4 ILE C 423 ASN C 425 -1 N ILE C 424 O ALA C 433 SHEET 1 Q 5 LEU C 259 LEU C 261 0 SHEET 2 Q 5 ILE C 443 ARG C 456 -1 O THR C 450 N LEU C 260 SHEET 3 Q 5 ILE C 284 ARG C 298 -1 N VAL C 286 O ILE C 452 SHEET 4 Q 5 ASN C 465 PRO C 470 0 SHEET 5 Q 5 THR C 358 PHE C 361 1 N ILE C 360 O PHE C 468 SHEET 1 R 7 ILE C 271 ARG C 273 0 SHEET 2 R 7 ILE C 284 ARG C 298 -1 O HIS C 287 N ILE C 271 SHEET 3 R 7 ILE C 443 ARG C 456 -1 O ILE C 452 N VAL C 286 SHEET 4 R 7 LYS C 328 ASN C 334 0 SHEET 5 R 7 THR C 413 ILE C 420 -1 O ILE C 414 N ILE C 333 SHEET 6 R 7 GLU C 381 CYS C 385 -1 N TYR C 384 O LYS C 419 SHEET 7 R 7 HIS C 374 CYS C 378 -1 N CYS C 378 O GLU C 381 SHEET 1 S 5 TRP D 45 ASP D 47 0 SHEET 2 S 5 TYR D 486 ILE D 491 -1 O GLN D 490 N LYS D 46 SHEET 3 S 5 TYR D 223 CYS D 228 -1 N LEU D 226 O LYS D 487 SHEET 4 S 5 VAL D 242 VAL D 245 -1 O SER D 243 N LYS D 227 SHEET 5 S 5 GLU D 83 LEU D 86 -1 N ILE D 84 O SER D 244 SHEET 1 T 3 CYS D 74 PRO D 76 0 SHEET 2 T 3 PHE D 53 SER D 56 1 N CYS D 54 O VAL D 75 SHEET 3 T 3 HIS D 216 CYS D 218 -1 O HIS D 216 N ALA D 55 SHEET 1 U 2 GLU D 91 ASN D 94 0 SHEET 2 U 2 THR D 236 CYS D 239 -1 O GLY D 237 N PHE D 93 SHEET 1 V 4 VAL D 200 LYS D 202 0 SHEET 2 V 4 VAL D 120 LEU D 122 -1 N LYS D 121 O ILE D 201 SHEET 3 V 4 GLN D 432 MET D 434 -1 O MET D 434 N VAL D 120 SHEET 4 V 4 ILE D 423 ASN D 425 -1 N ILE D 424 O ALA D 433 SHEET 1 W 5 LEU D 259 LEU D 261 0 SHEET 2 W 5 ILE D 443 ARG D 456 -1 O GLY D 451 N LEU D 260 SHEET 3 W 5 ILE D 284 ARG D 298 -1 N VAL D 286 O ILE D 452 SHEET 4 W 5 ASN D 465 PRO D 470 0 SHEET 5 W 5 THR D 358 PHE D 361 1 N ILE D 360 O PHE D 468 SHEET 1 X 7 ILE D 271 ARG D 273 0 SHEET 2 X 7 ILE D 284 ARG D 298 -1 O HIS D 287 N ILE D 271 SHEET 3 X 7 ILE D 443 ARG D 456 -1 O ILE D 452 N VAL D 286 SHEET 4 X 7 LYS D 328 ASN D 334 0 SHEET 5 X 7 THR D 413 ILE D 420 -1 O ILE D 414 N ILE D 333 SHEET 6 X 7 GLU D 381 CYS D 385 -1 N TYR D 384 O LYS D 419 SHEET 7 X 7 HIS D 374 CYS D 378 -1 N CYS D 378 O GLU D 381 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 6 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 8 CYS B 54 CYS B 74 1555 1555 2.03 SSBOND 9 CYS B 119 CYS B 205 1555 1555 2.03 SSBOND 10 CYS B 218 CYS B 247 1555 1555 2.03 SSBOND 11 CYS B 228 CYS B 239 1555 1555 2.03 SSBOND 12 CYS B 296 CYS B 331 1555 1555 2.03 SSBOND 13 CYS B 378 CYS B 445 1555 1555 2.03 SSBOND 14 CYS B 385 CYS B 418 1555 1555 2.03 SSBOND 15 CYS C 54 CYS C 74 1555 1555 2.03 SSBOND 16 CYS C 119 CYS C 205 1555 1555 2.03 SSBOND 17 CYS C 218 CYS C 247 1555 1555 2.03 SSBOND 18 CYS C 228 CYS C 239 1555 1555 2.03 SSBOND 19 CYS C 296 CYS C 331 1555 1555 2.03 SSBOND 20 CYS C 378 CYS C 445 1555 1555 2.03 SSBOND 21 CYS C 385 CYS C 418 1555 1555 2.03 SSBOND 22 CYS D 54 CYS D 74 1555 1555 2.03 SSBOND 23 CYS D 119 CYS D 205 1555 1555 2.03 SSBOND 24 CYS D 218 CYS D 247 1555 1555 2.03 SSBOND 25 CYS D 228 CYS D 239 1555 1555 2.03 SSBOND 26 CYS D 296 CYS D 331 1555 1555 2.03 SSBOND 27 CYS D 378 CYS D 445 1555 1555 2.03 SSBOND 28 CYS D 385 CYS D 418 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 295 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN A 334 C1 NAG A 507 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 508 1555 1555 1.44 LINK ND2 ASN A 448 C1 NAG A 509 1555 1555 1.44 LINK ND2 ASN B 234 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 241 C1 NAG B 502 1555 1555 1.44 LINK ND2 ASN B 262 C1 NAG B 503 1555 1555 1.44 LINK ND2 ASN B 276 C1 NAG B 504 1555 1555 1.44 LINK ND2 ASN B 289 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN B 295 C1 NAG B 506 1555 1555 1.44 LINK ND2 ASN B 334 C1 NAG B 507 1555 1555 1.44 LINK ND2 ASN B 386 C1 NAG B 508 1555 1555 1.44 LINK ND2 ASN B 448 C1 NAG B 509 1555 1555 1.44 LINK ND2 ASN C 234 C1 NAG C 501 1555 1555 1.44 LINK ND2 ASN C 241 C1 NAG C 502 1555 1555 1.44 LINK ND2 ASN C 262 C1 NAG C 503 1555 1555 1.44 LINK ND2 ASN C 276 C1 NAG C 504 1555 1555 1.44 LINK ND2 ASN C 289 C1 NAG C 505 1555 1555 1.44 LINK ND2 ASN C 295 C1 NAG C 506 1555 1555 1.44 LINK ND2 ASN C 334 C1 NAG C 507 1555 1555 1.43 LINK ND2 ASN C 355 C1 NAG C 508 1555 1555 1.44 LINK ND2 ASN C 386 C1 NAG C 509 1555 1555 1.44 LINK ND2 ASN C 392 C1 NAG C 510 1555 1555 1.44 LINK ND2 ASN C 448 C1 NAG C 511 1555 1555 1.43 LINK ND2 ASN D 234 C1 NAG D 501 1555 1555 1.44 LINK ND2 ASN D 241 C1 NAG D 502 1555 1555 1.44 LINK ND2 ASN D 262 C1 NAG D 503 1555 1555 1.44 LINK ND2 ASN D 276 C1 NAG D 504 1555 1555 1.44 LINK ND2 ASN D 289 C1 NAG D 505 1555 1555 1.44 LINK ND2 ASN D 295 C1 NAG D 506 1555 1555 1.44 LINK ND2 ASN D 334 C1 NAG D 507 1555 1555 1.44 LINK ND2 ASN D 355 C1 NAG D 508 1555 1555 1.44 LINK ND2 ASN D 386 C1 NAG D 509 1555 1555 1.44 LINK ND2 ASN D 392 C1 NAG D 510 1555 1555 1.44 LINK ND2 ASN D 448 C1 NAG D 511 1555 1555 1.44 CRYST1 113.621 68.842 116.192 90.00 110.59 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008801 0.000000 0.003306 0.00000 SCALE2 0.000000 0.014526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009194 0.00000