HEADER TRANSCRIPTION 21-DEC-14 4RZF TITLE CRYSTAL STRUCTURE ANALYSIS OF THE NUR77 LIGAND BINDING DOMAIN, S441W TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: NUR77-LBD; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1, NUCLEAR HORMONE RECEPTOR COMPND 6 NUR/77, NUR77, ORPHAN NUCLEAR RECEPTOR HMR, ORPHAN NUCLEAR RECEPTOR COMPND 7 TR3, ST-59, TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GFRP1, HMR, NAK1, NR4A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,X.TIAN,A.LI,L.LI,Y.LIU,H.CHEN,Q.WU,T.LIN REVDAT 5 28-FEB-24 4RZF 1 REMARK SEQADV REVDAT 4 22-NOV-17 4RZF 1 REMARK REVDAT 3 06-MAY-15 4RZF 1 JRNL REVDAT 2 22-APR-15 4RZF 1 JRNL REVDAT 1 18-MAR-15 4RZF 0 JRNL AUTH L.LI,Y.LIU,H.Z.CHEN,F.W.LI,J.F.WU,H.K.ZHANG,J.P.HE,Y.Z.XING, JRNL AUTH 2 Y.CHEN,W.J.WANG,X.Y.TIAN,A.Z.LI,Q.ZHANG,P.Q.HUANG,J.HAN, JRNL AUTH 3 T.LIN,Q.WU JRNL TITL IMPEDING THE INTERACTION BETWEEN NUR77 AND P38 REDUCES JRNL TITL 2 LPS-INDUCED INFLAMMATION. JRNL REF NAT.CHEM.BIOL. V. 11 339 2015 JRNL REFN ISSN 1552-4450 JRNL PMID 25822914 JRNL DOI 10.1038/NCHEMBIO.1788 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3111 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3764 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3729 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5094 ; 1.926 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8583 ; 1.523 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 5.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.958 ;23.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;17.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4127 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 837 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 3.950 ; 3.766 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 3.950 ; 3.765 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2313 ; 5.330 ; 5.605 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1908 ; 4.902 ; 4.152 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 31 267 A 31 267 13266 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000087986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, GLYCEROL, PH REMARK 280 4.2, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.04750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.09150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.04750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.09150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 ALA B 212 REMARK 465 GLY B 213 REMARK 465 GLU B 214 REMARK 465 PRO B 215 REMARK 465 GLN B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 PRO A 217 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 578 1.60 REMARK 500 OG SER A 219 O HOH A 490 1.74 REMARK 500 CB SER A 161 O HOH A 580 1.80 REMARK 500 OE1 GLU B 67 OE2 GLU B 248 1.83 REMARK 500 O HOH B 518 O HOH B 534 1.92 REMARK 500 O HOH A 523 O HOH A 581 1.96 REMARK 500 O HOH B 518 O HOH A 584 2.03 REMARK 500 CE MET A 262 O HOH A 482 2.09 REMARK 500 SG CYS A 220 O HOH A 560 2.13 REMARK 500 ND2 ASN B 198 O HOH B 480 2.14 REMARK 500 OG SER A 161 O HOH A 580 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 PHE B 64 OD1 ASN B 198 3544 1.12 REMARK 500 CG PHE B 64 OD1 ASN B 198 3544 1.33 REMARK 500 OE2 GLU B 128 OD2 ASP A 249 3544 1.92 REMARK 500 CG PHE B 64 CG ASN B 198 3544 1.95 REMARK 500 O HOH B 451 O HOH B 456 3544 2.03 REMARK 500 CE2 PHE B 64 OD1 ASN B 198 3544 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 62 C - N - CD ANGL. DEV. = -26.7 DEGREES REMARK 500 LEU B 113 CB - CG - CD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 LEU A 113 CB - CG - CD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 32 -50.53 61.49 REMARK 500 PRO B 266 15.21 -67.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 31 ASN B 32 -34.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RZE RELATED DB: PDB REMARK 900 RELATED ID: 4RZG RELATED DB: PDB DBREF 4RZF B 20 267 UNP P22736 NR4A1_HUMAN 351 598 DBREF 4RZF A 20 267 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 4RZF TRP B 110 UNP P22736 SER 441 ENGINEERED MUTATION SEQADV 4RZF LEU B 268 UNP P22736 EXPRESSION TAG SEQADV 4RZF GLU B 269 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 270 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 271 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 272 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 273 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 274 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS B 275 UNP P22736 EXPRESSION TAG SEQADV 4RZF TRP A 110 UNP P22736 SER 441 ENGINEERED MUTATION SEQADV 4RZF LEU A 268 UNP P22736 EXPRESSION TAG SEQADV 4RZF GLU A 269 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 270 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 271 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 272 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 273 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 274 UNP P22736 EXPRESSION TAG SEQADV 4RZF HIS A 275 UNP P22736 EXPRESSION TAG SEQRES 1 B 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 B 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 B 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 B 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 B 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 B 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 B 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU TRP SEQRES 8 B 256 ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR ARG SEQRES 9 B 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 B 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 B 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 B 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 B 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 B 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 B 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 B 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 B 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 B 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 B 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 B 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 A 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 A 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 A 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 A 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 A 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 A 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU TRP SEQRES 8 A 256 ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR ARG SEQRES 9 A 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 A 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 A 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 A 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 A 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 A 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 A 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 A 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 A 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 A 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 A 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 A 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS HET GOL B 301 6 HET GOL A 301 6 HET GOL A 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *342(H2 O) HELIX 1 1 ASN B 32 ASP B 43 1 12 HELIX 2 2 SER B 47 LEU B 51 5 5 HELIX 3 3 ASP B 68 LYS B 92 1 25 HELIX 4 4 GLY B 95 LEU B 99 5 5 HELIX 5 5 SER B 100 SER B 124 1 25 HELIX 6 6 LYS B 125 GLU B 128 5 4 HELIX 7 7 ARG B 141 GLY B 149 1 9 HELIX 8 8 ASP B 150 LEU B 165 1 16 HELIX 9 9 ASP B 168 ILE B 181 1 14 HELIX 10 10 GLU B 189 VAL B 211 1 23 HELIX 11 11 SER B 219 GLY B 226 1 8 HELIX 12 12 GLY B 226 ASP B 249 1 24 HELIX 13 13 PRO B 254 THR B 264 1 11 HELIX 14 14 ASN A 32 ASP A 43 1 12 HELIX 15 15 ASP A 68 LYS A 92 1 25 HELIX 16 16 GLY A 95 LEU A 99 5 5 HELIX 17 17 SER A 100 SER A 124 1 25 HELIX 18 18 LYS A 125 GLU A 128 5 4 HELIX 19 19 ARG A 141 GLY A 149 1 9 HELIX 20 20 GLY A 149 LEU A 165 1 17 HELIX 21 21 ASP A 168 ILE A 181 1 14 HELIX 22 22 GLU A 189 GLY A 213 1 25 HELIX 23 23 SER A 219 GLY A 226 1 8 HELIX 24 24 LYS A 227 ASP A 249 1 23 HELIX 25 25 PRO A 254 THR A 264 1 11 SHEET 1 A 2 LYS B 130 ILE B 132 0 SHEET 2 A 2 VAL B 138 HIS B 140 -1 O LEU B 139 N LEU B 131 SHEET 1 B 2 LYS A 130 ILE A 132 0 SHEET 2 B 2 VAL A 138 HIS A 140 -1 O LEU A 139 N LEU A 131 CISPEP 1 LEU B 61 PRO B 62 0 -28.23 CISPEP 2 PHE B 64 GLY B 65 0 0.86 SITE 1 AC1 9 HIS B 41 SER B 44 GLY B 45 PRO B 46 SITE 2 AC1 9 ARG B 119 ARG B 123 HOH B 408 HOH B 438 SITE 3 AC1 9 HOH B 441 SITE 1 AC2 4 LEU A 178 VAL A 179 THR A 182 HOH A 440 SITE 1 AC3 10 HIS A 41 SER A 44 GLY A 45 PRO A 46 SITE 2 AC3 10 ARG A 119 ARG A 123 HOH A 426 HOH A 433 SITE 3 AC3 10 HOH A 445 HOH A 491 CRYST1 74.542 76.183 128.095 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007807 0.00000