HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-DEC-14 4RZV TITLE CRYSTAL STRUCTURE OF THE BRAF (R509H) KINASE DOMAIN MONOMER BOUND TO TITLE 2 VEMURAFENIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUES 443-723; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL COMPND 6 ONCOGENE HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,E.GAVATHIOTIS REVDAT 3 20-SEP-23 4RZV 1 REMARK SEQADV HETSYN REVDAT 2 04-OCT-17 4RZV 1 HETSYN REVDAT 1 10-AUG-16 4RZV 0 JRNL AUTH Z.KAROULIA,Y.WU,T.A.AHMED,X.QISHENG,J.BOLLARD,C.KREPLER, JRNL AUTH 2 X.WU,C.ZHANG,G.BOLLAG,M.HERLYM,J.A.FAGIN,A.LUJAMBIO, JRNL AUTH 3 E.GAVATHIOTIS,P.I.POULIKAKOS JRNL TITL AN INTEGRATED MODEL OF RAF INHIBITOR ACTION PREDICTS JRNL TITL 2 INHIBITOR ACTIVITY AGAINST ONCOGENIC BRAF SIGNALING JRNL REF CANCER CELL V. 30 1 2016 JRNL REFN ISSN 1535-6108 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1760) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 9871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7719 - 4.3179 0.80 3107 146 0.1844 0.2302 REMARK 3 2 4.3179 - 3.4276 0.84 3114 172 0.2026 0.2809 REMARK 3 3 3.4276 - 2.9940 0.85 3180 152 0.2550 0.3313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4406 REMARK 3 ANGLE : 0.714 5949 REMARK 3 CHIRALITY : 0.025 639 REMARK 3 PLANARITY : 0.003 754 REMARK 3 DIHEDRAL : 13.716 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.6308 -1.2387 12.5651 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.4016 REMARK 3 T33: 0.3205 T12: 0.0042 REMARK 3 T13: -0.0487 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 4.2312 L22: 8.2182 REMARK 3 L33: 5.4937 L12: -0.6618 REMARK 3 L13: 0.3358 L23: -1.9398 REMARK 3 S TENSOR REMARK 3 S11: -0.4490 S12: -0.2777 S13: -0.4043 REMARK 3 S21: 0.3147 S22: 0.2258 S23: -0.6297 REMARK 3 S31: -0.0342 S32: -0.0555 S33: 0.1652 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 508 THROUGH 634 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.8333 14.8514 18.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.3399 REMARK 3 T33: 0.3848 T12: 0.0350 REMARK 3 T13: 0.0068 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.5506 L22: 4.6829 REMARK 3 L33: 4.3797 L12: 2.5400 REMARK 3 L13: 0.2660 L23: 1.6204 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: -0.0472 S13: 0.0842 REMARK 3 S21: -0.2301 S22: -0.0517 S23: -0.3049 REMARK 3 S31: -0.0024 S32: 0.0916 S33: -0.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 635 THROUGH 706 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.4959 27.7012 22.8363 REMARK 3 T TENSOR REMARK 3 T11: 0.3577 T22: 0.3956 REMARK 3 T33: 0.6259 T12: -0.0714 REMARK 3 T13: -0.0228 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 5.1070 L22: 4.9520 REMARK 3 L33: 4.6385 L12: 0.6349 REMARK 3 L13: 1.1294 L23: -2.6274 REMARK 3 S TENSOR REMARK 3 S11: -0.1958 S12: 0.0077 S13: 0.8661 REMARK 3 S21: 0.1674 S22: -0.1340 S23: -0.5411 REMARK 3 S31: -0.4169 S32: 0.6351 S33: 0.1531 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 707 THROUGH 721 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.7205 29.4592 30.2957 REMARK 3 T TENSOR REMARK 3 T11: 0.3958 T22: 0.7050 REMARK 3 T33: 0.7485 T12: -0.1373 REMARK 3 T13: 0.0166 T23: -0.1256 REMARK 3 L TENSOR REMARK 3 L11: 6.0034 L22: 4.6446 REMARK 3 L33: 3.1959 L12: -1.1386 REMARK 3 L13: 2.2292 L23: -1.4688 REMARK 3 S TENSOR REMARK 3 S11: -0.2677 S12: -1.0975 S13: 1.5335 REMARK 3 S21: 0.2456 S22: 0.5731 S23: 0.6144 REMARK 3 S31: -0.6423 S32: -0.3104 S33: -0.0187 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 449 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4891 17.1203 41.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.4594 REMARK 3 T33: 0.3995 T12: -0.0202 REMARK 3 T13: -0.0422 T23: -0.1141 REMARK 3 L TENSOR REMARK 3 L11: 6.5609 L22: 3.6096 REMARK 3 L33: 2.9408 L12: -0.3899 REMARK 3 L13: -0.3411 L23: -1.0784 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.2109 S13: -0.3952 REMARK 3 S21: 0.0852 S22: 0.3527 S23: 0.2545 REMARK 3 S31: 0.0805 S32: -0.3689 S33: -0.2837 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 550 THROUGH 722 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.3738 17.2334 52.3968 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.3971 REMARK 3 T33: 0.3587 T12: -0.0028 REMARK 3 T13: -0.0150 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.7059 L22: 5.2200 REMARK 3 L33: 6.3861 L12: -0.5215 REMARK 3 L13: 0.0524 L23: 0.9632 REMARK 3 S TENSOR REMARK 3 S11: -0.2224 S12: -0.2591 S13: -0.0279 REMARK 3 S21: 0.5479 S22: 0.1903 S23: -0.0586 REMARK 3 S31: 0.0546 S32: 0.1012 S33: 0.0468 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000088002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.994 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.0, 18% (W/V) PEG2000 REMARK 280 MME , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.84900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 121.64050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.84900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 121.64050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.84900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.64050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.84900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 121.64050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 SER A 722 REMARK 465 GLY A 723 REMARK 465 ARG B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 ASP B 629 REMARK 465 SER B 630 REMARK 465 ASN B 631 REMARK 465 GLY B 723 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 477 70.47 46.63 REMARK 500 SER A 535 -154.08 57.75 REMARK 500 LYS A 547 96.39 -66.82 REMARK 500 ARG A 575 -5.96 73.51 REMARK 500 ASP A 576 17.06 -140.25 REMARK 500 HIS B 477 17.94 58.56 REMARK 500 THR B 488 -76.57 -97.67 REMARK 500 GLU B 533 35.80 -85.21 REMARK 500 SER B 535 -159.71 55.00 REMARK 500 GLU B 545 87.63 41.09 REMARK 500 LYS B 547 -58.34 59.49 REMARK 500 ASP B 576 20.39 -150.14 REMARK 500 ARG B 603 -74.05 -91.81 REMARK 500 MET B 627 -132.22 62.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 032 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 032 B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RZW RELATED DB: PDB DBREF 4RZV A 443 723 UNP P15056 BRAF_HUMAN 443 723 DBREF 4RZV B 443 723 UNP P15056 BRAF_HUMAN 443 723 SEQADV 4RZV HIS A 509 UNP P15056 ARG 509 ENGINEERED MUTATION SEQADV 4RZV ALA A 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4RZV SER A 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4RZV LYS A 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4RZV ARG A 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 4RZV ASN A 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 4RZV SER A 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 4RZV GLU A 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 4RZV SER A 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 4RZV ARG A 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 4RZV SER A 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 4RZV ARG A 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 4RZV GLU A 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 4RZV GLU A 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 4RZV GLU A 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 4RZV SER A 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 4RZV GLY A 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQADV 4RZV HIS B 509 UNP P15056 ARG 509 ENGINEERED MUTATION SEQADV 4RZV ALA B 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4RZV SER B 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4RZV LYS B 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4RZV ARG B 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 4RZV ASN B 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 4RZV SER B 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 4RZV GLU B 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 4RZV SER B 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 4RZV ARG B 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 4RZV SER B 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 4RZV ARG B 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 4RZV GLU B 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 4RZV GLU B 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 4RZV GLU B 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 4RZV SER B 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 4RZV GLY B 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQRES 1 A 281 ARG ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY SEQRES 2 A 281 GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE SEQRES 3 A 281 GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA SEQRES 4 A 281 VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN SEQRES 5 A 281 LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS SEQRES 6 A 281 THR HIS HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER SEQRES 7 A 281 THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU SEQRES 8 A 281 GLY SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR SEQRES 9 A 281 LYS PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN SEQRES 10 A 281 THR ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE SEQRES 11 A 281 ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS SEQRES 12 A 281 GLU ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA SEQRES 13 A 281 THR VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU SEQRES 14 A 281 GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL SEQRES 15 A 281 ILE ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER SEQRES 16 A 281 ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET SEQRES 17 A 281 THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP SEQRES 18 A 281 GLN ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO SEQRES 19 A 281 ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET SEQRES 20 A 281 LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP SEQRES 21 A 281 GLU ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU SEQRES 22 A 281 GLU LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 281 ARG ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY SEQRES 2 B 281 GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE SEQRES 3 B 281 GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA SEQRES 4 B 281 VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN SEQRES 5 B 281 LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS SEQRES 6 B 281 THR HIS HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER SEQRES 7 B 281 THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU SEQRES 8 B 281 GLY SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR SEQRES 9 B 281 LYS PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN SEQRES 10 B 281 THR ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE SEQRES 11 B 281 ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS SEQRES 12 B 281 GLU ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA SEQRES 13 B 281 THR VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU SEQRES 14 B 281 GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL SEQRES 15 B 281 ILE ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER SEQRES 16 B 281 ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET SEQRES 17 B 281 THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP SEQRES 18 B 281 GLN ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO SEQRES 19 B 281 ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET SEQRES 20 B 281 LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP SEQRES 21 B 281 GLU ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU SEQRES 22 B 281 GLU LEU ALA ARG GLU LEU SER GLY HET 032 A 801 33 HET 032 B 801 33 HETNAM 032 N-(3-{[5-(4-CHLOROPHENYL)-1H-PYRROLO[2,3-B]PYRIDIN-3- HETNAM 2 032 YL]CARBONYL}-2,4-DIFLUOROPHENYL)PROPANE-1-SULFONAMIDE HETSYN 032 VEMURAFENIB; PLX4032 FORMUL 3 032 2(C23 H18 CL F2 N3 O3 S) HELIX 1 1 THR A 491 THR A 508 1 18 HELIX 2 2 SER A 536 ALA A 543 1 8 HELIX 3 3 GLU A 549 LYS A 570 1 22 HELIX 4 4 ALA A 621 ARG A 626 1 6 HELIX 5 5 SER A 634 GLY A 652 1 19 HELIX 6 6 ASN A 661 GLY A 672 1 12 HELIX 7 7 ASP A 677 VAL A 681 5 5 HELIX 8 8 PRO A 686 LEU A 697 1 12 HELIX 9 9 SER A 706 ALA A 718 1 13 HELIX 10 10 THR B 491 ARG B 506 1 16 HELIX 11 11 SER B 536 HIS B 542 1 7 HELIX 12 12 GLU B 549 LYS B 570 1 22 HELIX 13 13 LEU B 597 SER B 602 1 6 HELIX 14 14 SER B 605 LEU B 613 1 9 HELIX 15 15 SER B 614 SER B 616 5 3 HELIX 16 16 ALA B 621 ARG B 626 1 6 HELIX 17 17 SER B 634 GLY B 652 1 19 HELIX 18 18 ARG B 662 GLY B 672 1 11 HELIX 19 19 ASP B 677 VAL B 681 5 5 HELIX 20 20 PRO B 686 LEU B 697 1 12 HELIX 21 21 LYS B 700 ARG B 704 5 5 HELIX 22 22 SER B 706 SER B 722 1 17 SHEET 1 A 5 THR A 458 GLY A 464 0 SHEET 2 A 5 THR A 470 LYS A 475 -1 O LYS A 473 N GLN A 461 SHEET 3 A 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 A 5 ALA A 526 GLN A 530 -1 O THR A 529 N ALA A 481 SHEET 5 A 5 PHE A 516 SER A 520 -1 N GLY A 518 O VAL A 528 SHEET 1 B 2 ILE A 582 LEU A 584 0 SHEET 2 B 2 VAL A 590 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 C 5 THR B 458 GLY B 466 0 SHEET 2 C 5 GLY B 469 LYS B 475 -1 O VAL B 471 N ILE B 463 SHEET 3 C 5 ASP B 479 LEU B 485 -1 O VAL B 482 N TYR B 472 SHEET 4 C 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 C 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 D 2 ILE B 582 LEU B 584 0 SHEET 2 D 2 VAL B 590 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 SER A 465 GLY A 466 0 -0.97 CISPEP 2 LYS A 522 PRO A 523 0 1.08 CISPEP 3 SER A 614 GLY A 615 0 -1.86 CISPEP 4 ARG A 626 MET A 627 0 -25.39 CISPEP 5 LYS B 522 PRO B 523 0 0.72 CISPEP 6 TRP B 604 SER B 605 0 -5.49 SITE 1 AC1 17 ILE A 463 VAL A 471 ALA A 481 LYS A 483 SITE 2 AC1 17 LEU A 514 THR A 529 GLN A 530 TRP A 531 SITE 3 AC1 17 CYS A 532 SER A 535 SER A 536 HIS A 539 SITE 4 AC1 17 PHE A 583 GLY A 593 ASP A 594 PHE A 595 SITE 5 AC1 17 GLY A 596 SITE 1 AC2 20 ILE B 463 VAL B 471 ALA B 481 VAL B 482 SITE 2 AC2 20 LYS B 483 LEU B 514 ILE B 527 THR B 529 SITE 3 AC2 20 GLN B 530 TRP B 531 CYS B 532 SER B 535 SITE 4 AC2 20 HIS B 539 GLU B 545 THR B 546 PHE B 583 SITE 5 AC2 20 GLY B 593 ASP B 594 PHE B 595 GLY B 596 CRYST1 64.975 71.698 243.281 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004110 0.00000