HEADER TRANSFERASE 26-DEC-14 4RZX TITLE CRYSTAL STRUCTURE (TYPE-3) OF DTMP KINASE (ST1543) FROM SULFOLOBUS TITLE 2 TOKODAII STRAIN7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THYMIDYLATE KINASE; COMPND 5 SYNONYM: DTMP KINASE; COMPND 6 EC: 2.7.4.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 273063; SOURCE 4 STRAIN: STRAIN7; SOURCE 5 GENE: STK_15430, TMK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BISWAS,J.JEYAKANTHAN,K.SEKAR REVDAT 2 20-SEP-23 4RZX 1 REMARK LINK REVDAT 1 30-DEC-15 4RZX 0 JRNL AUTH A.BISWAS,J.JEYAKANTHAN,K.SEKAR JRNL TITL CRYSTAL STRUCTURE (TYPE-3) OF DTMP KINASE (ST1543) FROM JRNL TITL 2 SULFOLOBUS TOKODAII STRAIN7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1364 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.06000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.336 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3222 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3010 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4384 ; 1.695 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6887 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.081 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;32.958 ;23.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;15.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3584 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1621 ; 3.760 ; 4.506 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1620 ; 3.759 ; 4.505 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2018 ; 5.305 ; 6.734 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2019 ; 5.353 ; 7.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 4.069 ; 4.730 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1612 ; 4.222 ; 4.930 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2376 ; 6.125 ; 7.241 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3830 ; 8.099 ;37.576 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3829 ; 8.100 ;37.570 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 59 REMARK 3 RESIDUE RANGE : A 144 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -33.289 -1.195 24.018 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.1728 REMARK 3 T33: 0.2388 T12: 0.0401 REMARK 3 T13: -0.0113 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 1.4419 L22: 2.8368 REMARK 3 L33: 0.6116 L12: 1.2004 REMARK 3 L13: -0.8570 L23: -1.1427 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.1448 S13: 0.1103 REMARK 3 S21: 0.3796 S22: -0.0680 S23: 0.0875 REMARK 3 S31: -0.1605 S32: 0.0601 S33: -0.0663 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 43 REMARK 3 RESIDUE RANGE : B 44 B 77 REMARK 3 RESIDUE RANGE : B 78 B 94 REMARK 3 RESIDUE RANGE : B 95 B 183 REMARK 3 RESIDUE RANGE : B 184 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): -12.285 1.242 -2.039 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.0611 REMARK 3 T33: 0.1392 T12: -0.0567 REMARK 3 T13: 0.0203 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.5084 L22: 1.7628 REMARK 3 L33: 2.2192 L12: -0.1483 REMARK 3 L13: -1.2566 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: -0.1543 S12: -0.0769 S13: 0.0412 REMARK 3 S21: -0.0516 S22: 0.1033 S23: -0.1842 REMARK 3 S31: 0.2092 S32: -0.0288 S33: 0.0510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI-1 1 1 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : RH COATED BENT-CYRINDRICAL REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3480 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.005 M NICKEL(II) CHLORIDE HEXAHYDRATE, 0.1 M HEPES SODIUM, 15% REMARK 280 W/V POLYETHYLENE GLYCOL 3,350, 0.5 M SODIUM FLUORIDE, PH 7.0, REMARK 280 MICROBATCH UNDEROIL, TEMPERATURE 293.0K, EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.96700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.28250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.28250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.96700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 143 REMARK 465 ASN A 211 REMARK 465 SER A 212 REMARK 465 PHE A 213 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 TRP B 39 REMARK 465 ASN B 40 REMARK 465 SER B 41 REMARK 465 SER B 42 REMARK 465 LYS B 54 REMARK 465 LYS B 55 REMARK 465 ASP B 56 REMARK 465 ILE B 209 REMARK 465 ASP B 210 REMARK 465 ASN B 211 REMARK 465 SER B 212 REMARK 465 PHE B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 25 NZ REMARK 470 LYS A 31 CD CE NZ REMARK 470 SER A 41 OG REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 TYR A 96 CE2 REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 LYS A 113 CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 145 CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 LYS A 167 CE NZ REMARK 470 LYS A 178 CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 ILE B 49 CG1 CG2 CD1 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LEU B 57 CG CD1 CD2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 LYS B 140 CE NZ REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 GLN B 149 CG CD OE1 NE2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 LYS B 167 CD CE NZ REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 ILE B 199 CG1 CG2 CD1 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -157.28 -115.51 REMARK 500 SER A 85 14.51 -65.01 REMARK 500 ARG A 93 135.40 73.29 REMARK 500 TYR A 94 -158.93 -138.16 REMARK 500 SER A 160 138.50 -39.20 REMARK 500 LEU A 208 -71.51 -63.30 REMARK 500 ARG B 32 -178.04 178.62 REMARK 500 TYR B 94 -151.18 -147.71 REMARK 500 ASP B 108 102.80 -42.44 REMARK 500 GLU B 207 -72.80 -64.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 LYS A 50 NZ 98.9 REMARK 620 3 HIS A 67 NE2 105.1 105.7 REMARK 620 4 HOH A 409 O 164.2 76.8 90.7 REMARK 620 5 HOH A 410 O 90.1 163.9 84.7 91.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PLR RELATED DB: PDB REMARK 900 RELATED ID: 4NZY RELATED DB: PDB DBREF 4RZX A 1 213 UNP Q970Q8 KTHY2_SULTO 1 213 DBREF 4RZX B 1 213 UNP Q970Q8 KTHY2_SULTO 1 213 SEQRES 1 A 213 MET LYS LYS GLY VAL LEU ILE ALA PHE GLU GLY ILE ASP SEQRES 2 A 213 GLY SER GLY LYS SER SER GLN ALA THR LEU LEU LYS ASP SEQRES 3 A 213 TRP ILE GLU LEU LYS ARG ASP VAL TYR LEU THR GLU TRP SEQRES 4 A 213 ASN SER SER ASP TRP ILE HIS ASP ILE ILE LYS GLU ALA SEQRES 5 A 213 LYS LYS LYS ASP LEU LEU THR PRO LEU THR PHE SER LEU SEQRES 6 A 213 ILE HIS ALA THR ASP PHE SER ASP ARG TYR GLU ARG TYR SEQRES 7 A 213 ILE LEU PRO MET LEU LYS SER GLY PHE ILE VAL ILE SER SEQRES 8 A 213 ASP ARG TYR ILE TYR THR ALA TYR ALA ARG ASP SER VAL SEQRES 9 A 213 ARG GLY VAL ASP ILE ASP TRP VAL LYS LYS LEU TYR SER SEQRES 10 A 213 PHE ALA ILE LYS PRO ASP ILE THR PHE TYR ILE ARG VAL SEQRES 11 A 213 SER PRO ASP ILE ALA LEU GLU ARG ILE LYS LYS SER LYS SEQRES 12 A 213 ARG LYS ILE LYS PRO GLN GLU ALA GLY ALA ASP ILE PHE SEQRES 13 A 213 PRO GLY LEU SER PRO GLU GLU GLY PHE LEU LYS TYR GLN SEQRES 14 A 213 GLY LEU ILE THR GLU VAL TYR ASP LYS LEU VAL LYS ASP SEQRES 15 A 213 GLU ASN PHE ILE VAL ILE ASP GLY THR LYS THR PRO LYS SEQRES 16 A 213 GLU ILE GLN ILE GLN ILE ARG LYS PHE VAL GLY GLU LEU SEQRES 17 A 213 ILE ASP ASN SER PHE SEQRES 1 B 213 MET LYS LYS GLY VAL LEU ILE ALA PHE GLU GLY ILE ASP SEQRES 2 B 213 GLY SER GLY LYS SER SER GLN ALA THR LEU LEU LYS ASP SEQRES 3 B 213 TRP ILE GLU LEU LYS ARG ASP VAL TYR LEU THR GLU TRP SEQRES 4 B 213 ASN SER SER ASP TRP ILE HIS ASP ILE ILE LYS GLU ALA SEQRES 5 B 213 LYS LYS LYS ASP LEU LEU THR PRO LEU THR PHE SER LEU SEQRES 6 B 213 ILE HIS ALA THR ASP PHE SER ASP ARG TYR GLU ARG TYR SEQRES 7 B 213 ILE LEU PRO MET LEU LYS SER GLY PHE ILE VAL ILE SER SEQRES 8 B 213 ASP ARG TYR ILE TYR THR ALA TYR ALA ARG ASP SER VAL SEQRES 9 B 213 ARG GLY VAL ASP ILE ASP TRP VAL LYS LYS LEU TYR SER SEQRES 10 B 213 PHE ALA ILE LYS PRO ASP ILE THR PHE TYR ILE ARG VAL SEQRES 11 B 213 SER PRO ASP ILE ALA LEU GLU ARG ILE LYS LYS SER LYS SEQRES 12 B 213 ARG LYS ILE LYS PRO GLN GLU ALA GLY ALA ASP ILE PHE SEQRES 13 B 213 PRO GLY LEU SER PRO GLU GLU GLY PHE LEU LYS TYR GLN SEQRES 14 B 213 GLY LEU ILE THR GLU VAL TYR ASP LYS LEU VAL LYS ASP SEQRES 15 B 213 GLU ASN PHE ILE VAL ILE ASP GLY THR LYS THR PRO LYS SEQRES 16 B 213 GLU ILE GLN ILE GLN ILE ARG LYS PHE VAL GLY GLU LEU SEQRES 17 B 213 ILE ASP ASN SER PHE HET PO4 A 301 5 HET NI A 302 1 HET PO4 B 301 5 HETNAM PO4 PHOSPHATE ION HETNAM NI NICKEL (II) ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 NI NI 2+ FORMUL 6 HOH *16(H2 O) HELIX 1 1 GLY A 16 ARG A 32 1 17 HELIX 2 2 ASP A 43 LYS A 53 1 11 HELIX 3 3 THR A 59 TYR A 78 1 20 HELIX 4 4 TYR A 78 SER A 85 1 8 HELIX 5 5 TYR A 94 VAL A 104 1 11 HELIX 6 6 ASP A 108 TYR A 116 1 9 HELIX 7 7 SER A 131 SER A 142 1 12 HELIX 8 8 SER A 160 ASN A 184 1 25 HELIX 9 9 THR A 193 ASP A 210 1 18 HELIX 10 10 GLY B 16 GLU B 29 1 14 HELIX 11 11 TRP B 44 ALA B 52 1 9 HELIX 12 12 THR B 59 TYR B 78 1 20 HELIX 13 13 TYR B 78 SER B 85 1 8 HELIX 14 14 TYR B 94 VAL B 104 1 11 HELIX 15 15 ASP B 108 TYR B 116 1 9 HELIX 16 16 SER B 131 SER B 142 1 12 HELIX 17 17 LYS B 147 GLY B 152 1 6 HELIX 18 18 SER B 160 ASN B 184 1 25 HELIX 19 19 THR B 193 LEU B 208 1 16 SHEET 1 A 5 VAL A 34 GLU A 38 0 SHEET 2 A 5 ILE A 88 ASP A 92 1 O ILE A 88 N TYR A 35 SHEET 3 A 5 VAL A 5 GLU A 10 1 N ILE A 7 O VAL A 89 SHEET 4 A 5 ILE A 124 ARG A 129 1 O PHE A 126 N GLU A 10 SHEET 5 A 5 ILE A 186 ASP A 189 1 O ILE A 186 N THR A 125 SHEET 1 B 5 VAL B 34 LEU B 36 0 SHEET 2 B 5 ILE B 88 SER B 91 1 O ILE B 90 N TYR B 35 SHEET 3 B 5 VAL B 5 GLU B 10 1 N ILE B 7 O VAL B 89 SHEET 4 B 5 ILE B 124 ARG B 129 1 O PHE B 126 N GLU B 10 SHEET 5 B 5 PHE B 185 ASP B 189 1 O ILE B 188 N TYR B 127 LINK NE2 HIS A 46 NI NI A 302 1555 1555 2.23 LINK NZ LYS A 50 NI NI A 302 1555 1555 2.10 LINK NE2 HIS A 67 NI NI A 302 1555 1555 2.09 LINK NI NI A 302 O HOH A 409 1555 1555 2.26 LINK NI NI A 302 O HOH A 410 1555 1555 1.81 SITE 1 AC1 7 ILE A 12 ASP A 13 GLY A 14 SER A 15 SITE 2 AC1 7 GLY A 16 LYS A 17 SER A 18 SITE 1 AC2 5 HIS A 46 LYS A 50 HIS A 67 HOH A 409 SITE 2 AC2 5 HOH A 410 SITE 1 AC3 6 ILE B 12 GLY B 14 SER B 15 GLY B 16 SITE 2 AC3 6 LYS B 17 SER B 18 CRYST1 49.934 63.222 138.565 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007217 0.00000