HEADER TRANSCRIPTION/DNA 30-DEC-14 4S05 TITLE CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA TITLE 2 BOX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING TRANSCRIPTIONAL REGULATOR BASR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (26-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (26-MER); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1380908; SOURCE 4 STRAIN: JM45; SOURCE 5 GENE: N559_3529; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: LEADING STRAND; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 OTHER_DETAILS: LAGGING STRAND KEYWDS TWO-COMPONENT SYSTEM, RESPONSE REGULATOR, PMRA, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.D.HSIAO,T.H.WENG,Y.C.LI REVDAT 3 28-FEB-24 4S05 1 REMARK SEQADV LINK REVDAT 2 25-NOV-15 4S05 1 JRNL REVDAT 1 11-NOV-15 4S05 0 JRNL AUTH Y.C.LOU,T.H.WENG,Y.C.LI,Y.F.KAO,W.F.LIN,H.L.PENG,S.H.CHOU, JRNL AUTH 2 C.D.HSIAO,C.CHEN JRNL TITL STRUCTURE AND DYNAMICS OF POLYMYXIN-RESISTANCE-ASSOCIATED JRNL TITL 2 RESPONSE REGULATOR PMRA IN COMPLEX WITH PROMOTER DNA. JRNL REF NAT COMMUN V. 6 8838 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26564787 JRNL DOI 10.1038/NCOMMS9838 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8286 - 9.0806 0.94 1288 143 0.1631 0.2026 REMARK 3 2 9.0806 - 7.2415 1.00 1323 141 0.1409 0.1921 REMARK 3 3 7.2415 - 6.3361 1.00 1305 141 0.1834 0.2418 REMARK 3 4 6.3361 - 5.7614 1.00 1298 151 0.1860 0.2397 REMARK 3 5 5.7614 - 5.3509 1.00 1287 146 0.1934 0.2353 REMARK 3 6 5.3509 - 5.0371 1.00 1296 142 0.1705 0.2108 REMARK 3 7 5.0371 - 4.7859 1.00 1268 142 0.1654 0.1916 REMARK 3 8 4.7859 - 4.5783 0.99 1294 142 0.1621 0.2458 REMARK 3 9 4.5783 - 4.4026 0.99 1250 143 0.1749 0.2493 REMARK 3 10 4.4026 - 4.2511 0.99 1271 144 0.1918 0.2239 REMARK 3 11 4.2511 - 4.1186 0.99 1253 137 0.2085 0.2835 REMARK 3 12 4.1186 - 4.0011 1.00 1286 144 0.2468 0.2755 REMARK 3 13 4.0011 - 3.8960 1.00 1264 139 0.2688 0.3624 REMARK 3 14 3.8960 - 3.8000 0.99 1250 142 0.3074 0.3326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.037 4715 REMARK 3 ANGLE : 1.443 6616 REMARK 3 CHIRALITY : 0.083 760 REMARK 3 PLANARITY : 0.006 666 REMARK 3 DIHEDRAL : 24.311 1844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.6559 45.2999 21.1438 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: -0.2236 REMARK 3 T33: -1.0633 T12: -0.1719 REMARK 3 T13: -0.1544 T23: -0.4704 REMARK 3 L TENSOR REMARK 3 L11: -0.0092 L22: 0.0225 REMARK 3 L33: 0.0161 L12: 0.0062 REMARK 3 L13: 0.0025 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0544 S13: -0.0609 REMARK 3 S21: -0.1859 S22: 0.1158 S23: 0.1724 REMARK 3 S31: 0.0161 S32: -0.0175 S33: 0.3278 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 120:219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.9682 26.3883 13.2902 REMARK 3 T TENSOR REMARK 3 T11: 0.3759 T22: -0.0929 REMARK 3 T33: 0.4150 T12: -0.1543 REMARK 3 T13: 0.2446 T23: -0.2070 REMARK 3 L TENSOR REMARK 3 L11: 0.1537 L22: 0.8735 REMARK 3 L33: 0.1209 L12: 0.0002 REMARK 3 L13: 0.0591 L23: -0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: 0.0533 S13: -0.2321 REMARK 3 S21: -0.1408 S22: -0.0467 S23: -0.2672 REMARK 3 S31: 0.0232 S32: 0.0403 S33: -0.7957 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.9040 37.4485 44.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.3850 REMARK 3 T33: -0.2052 T12: -0.0603 REMARK 3 T13: 0.0708 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 0.1500 L22: 0.5321 REMARK 3 L33: 0.8431 L12: -0.1062 REMARK 3 L13: -0.0129 L23: 0.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.2000 S13: -0.0024 REMARK 3 S21: -0.0711 S22: 0.2060 S23: -0.1699 REMARK 3 S31: 0.0206 S32: 0.2590 S33: 1.4282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 105:219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.7413 12.0427 15.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.9713 T22: 0.0954 REMARK 3 T33: 0.6821 T12: -0.2824 REMARK 3 T13: 0.2024 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 0.4939 L22: 0.7045 REMARK 3 L33: 0.7701 L12: 0.1021 REMARK 3 L13: -0.2372 L23: 0.3965 REMARK 3 S TENSOR REMARK 3 S11: -0.5208 S12: 0.0582 S13: -0.6506 REMARK 3 S21: -0.3286 S22: -0.0419 S23: 0.1547 REMARK 3 S31: 0.4642 S32: -0.1746 S33: -1.1342 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.0879 34.8509 -2.7568 REMARK 3 T TENSOR REMARK 3 T11: 0.7077 T22: 0.3261 REMARK 3 T33: 0.6120 T12: -0.4856 REMARK 3 T13: 0.4681 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 0.1957 L22: 0.5502 REMARK 3 L33: 0.6927 L12: -0.3292 REMARK 3 L13: 0.2907 L23: -0.4419 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.0465 S13: 0.0114 REMARK 3 S21: -0.0510 S22: -0.1075 S23: -0.2379 REMARK 3 S31: -0.0055 S32: 0.2036 S33: -0.3306 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 10:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.9361 0.7681 -4.1061 REMARK 3 T TENSOR REMARK 3 T11: 1.3939 T22: 0.5600 REMARK 3 T33: 0.8852 T12: -0.4678 REMARK 3 T13: -0.0216 T23: -0.1553 REMARK 3 L TENSOR REMARK 3 L11: 0.0540 L22: 0.1000 REMARK 3 L33: 0.0605 L12: 0.0644 REMARK 3 L13: 0.0645 L23: 0.0534 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: 0.0960 S13: -0.1079 REMARK 3 S21: -0.3875 S22: 0.0615 S23: -0.0676 REMARK 3 S31: 0.0759 S32: -0.2039 S33: 0.2141 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.3955 -6.6075 -1.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.8588 T22: 0.5324 REMARK 3 T33: 1.3331 T12: -0.3624 REMARK 3 T13: 0.1811 T23: -0.3130 REMARK 3 L TENSOR REMARK 3 L11: 0.0593 L22: 0.2255 REMARK 3 L33: 0.2274 L12: -0.0071 REMARK 3 L13: -0.1163 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.1158 S12: 0.0819 S13: -0.0454 REMARK 3 S21: -0.0746 S22: -0.1389 S23: 0.1949 REMARK 3 S31: 0.0217 S32: -0.1497 S33: 0.0057 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN D AND RESID 8:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.1075 6.9399 -7.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.7065 T22: 0.4793 REMARK 3 T33: 0.8359 T12: -0.3725 REMARK 3 T13: 0.5504 T23: -0.1547 REMARK 3 L TENSOR REMARK 3 L11: 0.4507 L22: 0.0701 REMARK 3 L33: 0.2746 L12: 0.0803 REMARK 3 L13: -0.0366 L23: -0.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.0334 S13: -0.2501 REMARK 3 S21: -0.0042 S22: 0.0513 S23: -0.0189 REMARK 3 S31: -0.0064 S32: 0.0527 S33: 0.1829 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN D AND RESID 15:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.8597 32.2121 -3.1058 REMARK 3 T TENSOR REMARK 3 T11: 1.0058 T22: 0.6419 REMARK 3 T33: 0.7953 T12: -0.3409 REMARK 3 T13: 0.3833 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 0.0850 L22: 0.3770 REMARK 3 L33: 0.1508 L12: 0.1114 REMARK 3 L13: -0.1123 L23: -0.2132 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0113 S13: 0.1142 REMARK 3 S21: -0.1855 S22: -0.1543 S23: -0.3917 REMARK 3 S31: -0.1970 S32: 0.3091 S33: -0.2429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6500 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19931 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2590 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS, PH 9.8, 0.8 M SODIUM REMARK 280 ACETATE, 12% (W/V) POLYETHYLENE GLYCOL 1000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.90233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.80467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.80467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.90233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 220 REMARK 465 ASP A 221 REMARK 465 THR A 222 REMARK 465 GLU A 223 REMARK 465 HIS A 224 REMARK 465 LEU A 225 REMARK 465 GLU A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 ASP B 220 REMARK 465 ASP B 221 REMARK 465 THR B 222 REMARK 465 GLU B 223 REMARK 465 HIS B 224 REMARK 465 LEU B 225 REMARK 465 GLU B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DA C 11 C5' REMARK 480 DG D 9 C4' C3' O3' C2' C1' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 179 OP2 DC C 17 1.98 REMARK 500 NH1 ARG B 198 OP1 DC D 5 2.14 REMARK 500 O LEU A 91 NH1 ARG B 117 2.14 REMARK 500 O SER B 89 OG1 THR B 93 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 9 O3' DG D 9 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 12 C3' - C2' - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 DT C 18 C6 - C5 - C7 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 21 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 22 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 26 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 1 C3' - C2' - C1' ANGL. DEV. = -7.7 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 6 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 7 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG D 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 17 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 19 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 21 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DA D 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA D 24 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 -71.78 -74.95 REMARK 500 HIS A 119 -70.98 -59.76 REMARK 500 ASN A 120 -71.17 -55.70 REMARK 500 ASN A 188 16.51 54.39 REMARK 500 ILE B 201 3.59 83.27 REMARK 500 ASN B 218 -64.62 -121.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 51 OD2 106.9 REMARK 620 3 GLY A 53 O 81.0 103.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 ASP B 8 OD1 62.2 REMARK 620 3 ASP B 51 OD2 139.0 81.8 REMARK 620 4 GLY B 53 O 76.8 113.6 102.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S04 RELATED DB: PDB DBREF 4S05 A 1 223 UNP S5YJU7 S5YJU7_KLEPN 1 223 DBREF 4S05 B 1 223 UNP S5YJU7 S5YJU7_KLEPN 1 223 DBREF 4S05 C 1 26 PDB 4S05 4S05 1 26 DBREF 4S05 D 1 26 PDB 4S05 4S05 1 26 SEQADV 4S05 GLY A 181 UNP S5YJU7 TRP 181 ENGINEERED MUTATION SEQADV 4S05 ASP A 220 UNP S5YJU7 ILE 220 ENGINEERED MUTATION SEQADV 4S05 HIS A 224 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 LEU A 225 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 GLU A 226 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 227 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 228 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 229 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 230 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 231 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS A 232 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 GLY B 181 UNP S5YJU7 TRP 181 ENGINEERED MUTATION SEQADV 4S05 ASP B 220 UNP S5YJU7 ILE 220 ENGINEERED MUTATION SEQADV 4S05 HIS B 224 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 LEU B 225 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 GLU B 226 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 227 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 228 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 229 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 230 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 231 UNP S5YJU7 EXPRESSION TAG SEQADV 4S05 HIS B 232 UNP S5YJU7 EXPRESSION TAG SEQRES 1 A 232 MET LYS ILE LEU VAL ILE GLU ASP ASP ALA LEU LEU LEU SEQRES 2 A 232 GLN GLY LEU ILE LEU ALA MET GLN SER GLU GLY TYR VAL SEQRES 3 A 232 CYS ASP GLY VAL SER THR ALA HIS GLU ALA ALA LEU SER SEQRES 4 A 232 LEU ALA SER ASN HIS TYR SER LEU ILE VAL LEU ASP LEU SEQRES 5 A 232 GLY LEU PRO ASP GLU ASP GLY LEU HIS PHE LEU SER ARG SEQRES 6 A 232 MET ARG ARG GLU LYS MET THR GLN PRO VAL LEU ILE LEU SEQRES 7 A 232 THR ALA ARG ASP THR LEU GLU ASP ARG ILE SER GLY LEU SEQRES 8 A 232 ASP THR GLY ALA ASP ASP TYR LEU VAL LYS PRO PHE ALA SEQRES 9 A 232 LEU GLU GLU LEU ASN ALA ARG ILE ARG ALA LEU LEU ARG SEQRES 10 A 232 ARG HIS ASN ASN GLN GLY ASP ASN GLU ILE SER VAL GLY SEQRES 11 A 232 ASN LEU ARG LEU ASN VAL THR ARG ARG LEU VAL TRP LEU SEQRES 12 A 232 GLY GLU THR ALA LEU ASP LEU THR PRO LYS GLU TYR ALA SEQRES 13 A 232 LEU LEU SER ARG LEU MET MET LYS ALA GLY SER PRO VAL SEQRES 14 A 232 HIS ARG GLU ILE LEU TYR ASN ASP ILE TYR SER GLY ASP SEQRES 15 A 232 ASN GLU PRO ALA THR ASN THR LEU GLU VAL HIS ILE HIS SEQRES 16 A 232 ASN LEU ARG GLU LYS ILE GLY LYS SER ARG ILE ARG THR SEQRES 17 A 232 VAL ARG GLY PHE GLY TYR MET LEU ALA ASN ASN ASP ASP SEQRES 18 A 232 THR GLU HIS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 232 MET LYS ILE LEU VAL ILE GLU ASP ASP ALA LEU LEU LEU SEQRES 2 B 232 GLN GLY LEU ILE LEU ALA MET GLN SER GLU GLY TYR VAL SEQRES 3 B 232 CYS ASP GLY VAL SER THR ALA HIS GLU ALA ALA LEU SER SEQRES 4 B 232 LEU ALA SER ASN HIS TYR SER LEU ILE VAL LEU ASP LEU SEQRES 5 B 232 GLY LEU PRO ASP GLU ASP GLY LEU HIS PHE LEU SER ARG SEQRES 6 B 232 MET ARG ARG GLU LYS MET THR GLN PRO VAL LEU ILE LEU SEQRES 7 B 232 THR ALA ARG ASP THR LEU GLU ASP ARG ILE SER GLY LEU SEQRES 8 B 232 ASP THR GLY ALA ASP ASP TYR LEU VAL LYS PRO PHE ALA SEQRES 9 B 232 LEU GLU GLU LEU ASN ALA ARG ILE ARG ALA LEU LEU ARG SEQRES 10 B 232 ARG HIS ASN ASN GLN GLY ASP ASN GLU ILE SER VAL GLY SEQRES 11 B 232 ASN LEU ARG LEU ASN VAL THR ARG ARG LEU VAL TRP LEU SEQRES 12 B 232 GLY GLU THR ALA LEU ASP LEU THR PRO LYS GLU TYR ALA SEQRES 13 B 232 LEU LEU SER ARG LEU MET MET LYS ALA GLY SER PRO VAL SEQRES 14 B 232 HIS ARG GLU ILE LEU TYR ASN ASP ILE TYR SER GLY ASP SEQRES 15 B 232 ASN GLU PRO ALA THR ASN THR LEU GLU VAL HIS ILE HIS SEQRES 16 B 232 ASN LEU ARG GLU LYS ILE GLY LYS SER ARG ILE ARG THR SEQRES 17 B 232 VAL ARG GLY PHE GLY TYR MET LEU ALA ASN ASN ASP ASP SEQRES 18 B 232 THR GLU HIS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 26 DA DT DT DT DC DT DT DA DA DT DA DT DT SEQRES 2 C 26 DA DT DC DC DT DA DA DG DC DA DA DG DG SEQRES 1 D 26 DC DT DT DG DC DT DT DA DG DG DA DT DA SEQRES 2 D 26 DA DT DA DT DT DA DA DG DA DA DA DT DC HET BEF A 301 4 HET MG A 302 1 HET BEF B 301 4 HET MG B 302 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 5 BEF 2(BE F3 1-) FORMUL 6 MG 2(MG 2+) HELIX 1 1 ASP A 9 GLY A 24 1 16 HELIX 2 2 THR A 32 ASN A 43 1 12 HELIX 3 3 ASP A 58 GLU A 69 1 12 HELIX 4 4 THR A 83 ASP A 92 1 10 HELIX 5 5 ALA A 104 ASN A 120 1 17 HELIX 6 6 THR A 151 LYS A 164 1 14 HELIX 7 7 HIS A 170 TYR A 179 1 10 HELIX 8 8 SER A 180 GLU A 184 5 5 HELIX 9 9 ASN A 188 LYS A 200 1 13 HELIX 10 10 ASP B 9 GLU B 23 1 15 HELIX 11 11 THR B 32 ASN B 43 1 12 HELIX 12 12 ASP B 58 GLU B 69 1 12 HELIX 13 13 THR B 83 THR B 93 1 11 HELIX 14 14 ALA B 104 ASN B 121 1 18 HELIX 15 15 THR B 151 LYS B 164 1 14 HELIX 16 16 HIS B 170 ASP B 177 1 8 HELIX 17 17 SER B 180 GLU B 184 5 5 HELIX 18 18 THR B 189 GLU B 199 1 11 SHEET 1 A 3 VAL A 26 VAL A 30 0 SHEET 2 A 3 LYS A 2 ILE A 6 1 N VAL A 5 O VAL A 30 SHEET 3 A 3 LEU A 47 VAL A 49 1 O LEU A 47 N LEU A 4 SHEET 1 B 3 ILE A 127 VAL A 129 0 SHEET 2 B 3 LEU A 132 ASN A 135 -1 O LEU A 134 N ILE A 127 SHEET 3 B 3 LEU A 140 LEU A 143 -1 O TRP A 142 N ARG A 133 SHEET 1 C 2 ILE A 206 THR A 208 0 SHEET 2 C 2 TYR A 214 LEU A 216 -1 O MET A 215 N ARG A 207 SHEET 1 D 5 VAL B 26 VAL B 30 0 SHEET 2 D 5 LYS B 2 ILE B 6 1 N ILE B 3 O ASP B 28 SHEET 3 D 5 LEU B 47 LEU B 50 1 O LEU B 47 N LEU B 4 SHEET 4 D 5 VAL B 75 THR B 79 1 O LEU B 76 N ILE B 48 SHEET 5 D 5 ASP B 97 VAL B 100 1 O LEU B 99 N ILE B 77 SHEET 1 E 3 GLU B 126 VAL B 129 0 SHEET 2 E 3 LEU B 132 ASN B 135 -1 O LEU B 134 N ILE B 127 SHEET 3 E 3 LEU B 140 LEU B 143 -1 O LEU B 140 N ASN B 135 SHEET 1 F 2 ILE B 206 THR B 208 0 SHEET 2 F 2 TYR B 214 LEU B 216 -1 O MET B 215 N ARG B 207 LINK OD1 ASP A 8 MG MG A 302 1555 1555 2.01 LINK OD2 ASP A 51 MG MG A 302 1555 1555 2.26 LINK O GLY A 53 MG MG A 302 1555 1555 2.81 LINK OD2 ASP B 8 MG MG B 302 1555 1555 2.12 LINK OD1 ASP B 8 MG MG B 302 1555 1555 2.14 LINK OD2 ASP B 51 MG MG B 302 1555 1555 2.18 LINK O GLY B 53 MG MG B 302 1555 1555 2.86 CISPEP 1 THR A 93 GLY A 94 0 5.86 CISPEP 2 LYS A 101 PRO A 102 0 7.39 CISPEP 3 ASN A 125 GLU A 126 0 2.54 CISPEP 4 LYS A 203 SER A 204 0 0.59 CISPEP 5 LYS B 101 PRO B 102 0 10.13 CISPEP 6 GLY B 144 GLU B 145 0 -10.33 SITE 1 AC1 6 ASP A 51 GLY A 53 THR A 79 ALA A 80 SITE 2 AC1 6 LYS A 101 MG A 302 SITE 1 AC2 4 ASP A 8 ASP A 51 GLY A 53 BEF A 301 SITE 1 AC3 5 ASP B 51 THR B 79 ALA B 80 LYS B 101 SITE 2 AC3 5 MG B 302 SITE 1 AC4 4 ASP B 8 ASP B 51 GLY B 53 BEF B 301 CRYST1 162.640 162.640 131.707 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006149 0.003550 0.000000 0.00000 SCALE2 0.000000 0.007100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007593 0.00000