data_4S14 # _entry.id 4S14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB088047 PDB 4S14 WWPDB D_1000088047 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4S15 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4S14 _pdbx_database_status.recvd_initial_deposition_date 2015-01-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, P.' 1 'Santori, F.R.' 2 'Littman, D.R.' 3 'Rastinejad, F.' 4 # _citation.id primary _citation.title 'Identification of Natural ROR gamma Ligands that Regulate the Development of Lymphoid Cells.' _citation.journal_abbrev 'Cell Metab' _citation.journal_volume 21 _citation.page_first 286 _citation.page_last 297 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1550-4131 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25651181 _citation.pdbx_database_id_DOI 10.1016/j.cmet.2015.01.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Santori, F.R.' 1 primary 'Huang, P.' 2 primary 'van de Pavert, S.A.' 3 primary 'Douglass, E.F.' 4 primary 'Leaver, D.J.' 5 primary 'Haubrich, B.A.' 6 primary 'Keber, R.' 7 primary 'Lorbek, G.' 8 primary 'Konijn, T.' 9 primary 'Rosales, B.N.' 10 primary 'Rozman, D.' 11 primary 'Horvat, S.' 12 primary 'Rahier, A.' 13 primary 'Mebius, R.E.' 14 primary 'Rastinejad, F.' 15 primary 'Nes, W.D.' 16 primary 'Littman, D.R.' 17 # _cell.entry_id 4S14 _cell.length_a 158.179 _cell.length_b 158.179 _cell.length_c 129.801 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4S14 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear receptor ROR-gamma' 29913.531 1 ? ? 'ligand-binding domain' ? 2 polymer syn 'Nuclear receptor-interacting protein 1' 1380.632 1 ? ? 'LxxLL binding motif' ? 3 non-polymer syn '(3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid' 442.674 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Nuclear receptor RZR-gamma, Nuclear receptor subfamily 1 group F member 3, RAR-related orphan receptor C, Retinoid-related orphan receptor-gamma ; 2 'Nuclear factor RIP140, Receptor-interacting protein 140' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLS GFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFP PLYKELFSTETESPVGLSK ; ;GSAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLS GFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFP PLYKELFSTETESPVGLSK ; A ? 2 'polypeptide(L)' no no TLLQLLLGHKNE TLLQLLLGHKNE C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 PRO n 1 5 TYR n 1 6 ALA n 1 7 SER n 1 8 LEU n 1 9 THR n 1 10 GLU n 1 11 ILE n 1 12 GLU n 1 13 HIS n 1 14 LEU n 1 15 VAL n 1 16 GLN n 1 17 SER n 1 18 VAL n 1 19 CYS n 1 20 LYS n 1 21 SER n 1 22 TYR n 1 23 ARG n 1 24 GLU n 1 25 THR n 1 26 CYS n 1 27 GLN n 1 28 LEU n 1 29 ARG n 1 30 LEU n 1 31 GLU n 1 32 ASP n 1 33 LEU n 1 34 LEU n 1 35 ARG n 1 36 GLN n 1 37 ARG n 1 38 SER n 1 39 ASN n 1 40 ILE n 1 41 PHE n 1 42 SER n 1 43 ARG n 1 44 GLU n 1 45 GLU n 1 46 VAL n 1 47 THR n 1 48 GLY n 1 49 TYR n 1 50 GLN n 1 51 ARG n 1 52 LYS n 1 53 SER n 1 54 MET n 1 55 TRP n 1 56 GLU n 1 57 MET n 1 58 TRP n 1 59 GLU n 1 60 ARG n 1 61 CYS n 1 62 ALA n 1 63 HIS n 1 64 HIS n 1 65 LEU n 1 66 THR n 1 67 GLU n 1 68 ALA n 1 69 ILE n 1 70 GLN n 1 71 TYR n 1 72 VAL n 1 73 VAL n 1 74 GLU n 1 75 PHE n 1 76 ALA n 1 77 LYS n 1 78 ARG n 1 79 LEU n 1 80 SER n 1 81 GLY n 1 82 PHE n 1 83 MET n 1 84 GLU n 1 85 LEU n 1 86 CYS n 1 87 GLN n 1 88 ASN n 1 89 ASP n 1 90 GLN n 1 91 ILE n 1 92 VAL n 1 93 LEU n 1 94 LEU n 1 95 LYS n 1 96 ALA n 1 97 GLY n 1 98 ALA n 1 99 MET n 1 100 GLU n 1 101 VAL n 1 102 VAL n 1 103 LEU n 1 104 VAL n 1 105 ARG n 1 106 MET n 1 107 CYS n 1 108 ARG n 1 109 ALA n 1 110 TYR n 1 111 ASN n 1 112 ALA n 1 113 ASP n 1 114 ASN n 1 115 ARG n 1 116 THR n 1 117 VAL n 1 118 PHE n 1 119 PHE n 1 120 GLU n 1 121 GLY n 1 122 LYS n 1 123 TYR n 1 124 GLY n 1 125 GLY n 1 126 MET n 1 127 GLU n 1 128 LEU n 1 129 PHE n 1 130 ARG n 1 131 ALA n 1 132 LEU n 1 133 GLY n 1 134 CYS n 1 135 SER n 1 136 GLU n 1 137 LEU n 1 138 ILE n 1 139 SER n 1 140 SER n 1 141 ILE n 1 142 PHE n 1 143 ASP n 1 144 PHE n 1 145 SER n 1 146 HIS n 1 147 SER n 1 148 LEU n 1 149 SER n 1 150 ALA n 1 151 LEU n 1 152 HIS n 1 153 PHE n 1 154 SER n 1 155 GLU n 1 156 ASP n 1 157 GLU n 1 158 ILE n 1 159 ALA n 1 160 LEU n 1 161 TYR n 1 162 THR n 1 163 ALA n 1 164 LEU n 1 165 VAL n 1 166 LEU n 1 167 ILE n 1 168 ASN n 1 169 ALA n 1 170 HIS n 1 171 ARG n 1 172 PRO n 1 173 GLY n 1 174 LEU n 1 175 GLN n 1 176 GLU n 1 177 LYS n 1 178 ARG n 1 179 LYS n 1 180 VAL n 1 181 GLU n 1 182 GLN n 1 183 LEU n 1 184 GLN n 1 185 TYR n 1 186 ASN n 1 187 LEU n 1 188 GLU n 1 189 LEU n 1 190 ALA n 1 191 PHE n 1 192 HIS n 1 193 HIS n 1 194 HIS n 1 195 LEU n 1 196 CYS n 1 197 LYS n 1 198 THR n 1 199 HIS n 1 200 ARG n 1 201 GLN n 1 202 SER n 1 203 ILE n 1 204 LEU n 1 205 ALA n 1 206 LYS n 1 207 LEU n 1 208 PRO n 1 209 PRO n 1 210 LYS n 1 211 GLY n 1 212 LYS n 1 213 LEU n 1 214 ARG n 1 215 SER n 1 216 LEU n 1 217 CYS n 1 218 SER n 1 219 GLN n 1 220 HIS n 1 221 VAL n 1 222 GLU n 1 223 ARG n 1 224 LEU n 1 225 GLN n 1 226 ILE n 1 227 PHE n 1 228 GLN n 1 229 HIS n 1 230 LEU n 1 231 HIS n 1 232 PRO n 1 233 ILE n 1 234 VAL n 1 235 VAL n 1 236 GLN n 1 237 ALA n 1 238 ALA n 1 239 PHE n 1 240 PRO n 1 241 PRO n 1 242 LEU n 1 243 TYR n 1 244 LYS n 1 245 GLU n 1 246 LEU n 1 247 PHE n 1 248 SER n 1 249 THR n 1 250 GLU n 1 251 THR n 1 252 GLU n 1 253 SER n 1 254 PRO n 1 255 VAL n 1 256 GLY n 1 257 LEU n 1 258 SER n 1 259 LYS n 2 1 THR n 2 2 LEU n 2 3 LEU n 2 4 GLN n 2 5 LEU n 2 6 LEU n 2 7 LEU n 2 8 GLY n 2 9 HIS n 2 10 LYS n 2 11 ASN n 2 12 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR1F3, RORC, RORG, RZRG' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET46 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RORG_HUMAN P51449 1 ;APYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGF MELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYT ALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPL YKELFSTETESPVGLSK ; 262 ? 2 UNP NRIP1_HUMAN P48552 2 TLLQLLLGHKNE 499 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4S14 A 3 ? 259 ? P51449 262 ? 518 ? 262 518 2 2 4S14 C 1 ? 12 ? P48552 499 ? 510 ? 498 509 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4S14 GLY A 1 ? UNP P51449 ? ? 'EXPRESSION TAG' 260 1 1 4S14 SER A 2 ? UNP P51449 ? ? 'EXPRESSION TAG' 261 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4D8 non-polymer . '(3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid' 4alpha-carboxy-4beta-methyl-zymosterol 'C29 H46 O3' 442.674 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4S14 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 282 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '0.3M Potassium sodium tartrate, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 282K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock high-resolution double-crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 4S14 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.54 _reflns.number_obs 12173 _reflns.number_all 12173 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4S14 _refine.ls_number_reflns_obs 12041 _refine.ls_number_reflns_all 12156 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.111 _refine.ls_d_res_high 3.542 _refine.ls_percent_reflns_obs 99.05 _refine.ls_R_factor_obs 0.1882 _refine.ls_R_factor_all 0.1882 _refine.ls_R_factor_R_work 0.1867 _refine.ls_R_factor_R_free 0.2193 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.71 _refine.ls_number_reflns_R_free 567 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 19.57 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2075 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2107 _refine_hist.d_res_high 3.542 _refine_hist.d_res_low 47.111 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.003 ? ? 2156 ? 'X-RAY DIFFRACTION' f_angle_d 0.755 ? ? 2912 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.244 ? ? 817 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.048 ? ? 324 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 366 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 3.5418 3.8981 2765 0.2056 98.00 0.2284 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.8981 4.4618 2816 0.1738 99.00 0.2309 . . 146 . . . . 'X-RAY DIFFRACTION' . 4.4618 5.6199 2851 0.1707 99.00 0.1857 . . 152 . . . . 'X-RAY DIFFRACTION' . 5.6199 47.1147 3042 0.1980 99.00 0.2364 . . 128 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4S14 _struct.title ;Crystal structure of the orphan nuclear receptor RORgamma ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8) ; _struct.pdbx_descriptor 'Nuclear receptor ROR-gamma, Nuclear receptor-interacting protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4S14 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'transcription factor, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? THR A 25 ? SER A 266 THR A 284 1 ? 19 HELX_P HELX_P2 2 ARG A 29 ? GLN A 36 ? ARG A 288 GLN A 295 1 ? 8 HELX_P HELX_P3 3 ARG A 37 ? ASN A 39 ? ARG A 296 ASN A 298 5 ? 3 HELX_P HELX_P4 4 SER A 42 ? ARG A 51 ? SER A 301 ARG A 310 1 ? 10 HELX_P HELX_P5 5 SER A 53 ? LEU A 79 ? SER A 312 LEU A 338 1 ? 27 HELX_P HELX_P6 6 CYS A 86 ? MET A 106 ? CYS A 345 MET A 365 1 ? 21 HELX_P HELX_P7 7 GLY A 125 ? GLY A 133 ? GLY A 384 GLY A 392 5 ? 9 HELX_P HELX_P8 8 CYS A 134 ? LEU A 151 ? CYS A 393 LEU A 410 1 ? 18 HELX_P HELX_P9 9 SER A 154 ? ILE A 167 ? SER A 413 ILE A 426 1 ? 14 HELX_P HELX_P10 10 GLU A 176 ? THR A 198 ? GLU A 435 THR A 457 1 ? 23 HELX_P HELX_P11 11 SER A 202 ? LEU A 207 ? SER A 461 LEU A 466 1 ? 6 HELX_P HELX_P12 12 PRO A 209 ? HIS A 231 ? PRO A 468 HIS A 490 1 ? 23 HELX_P HELX_P13 13 HIS A 231 ? ALA A 238 ? HIS A 490 ALA A 497 1 ? 8 HELX_P HELX_P14 14 PRO A 240 ? SER A 248 ? PRO A 499 SER A 507 1 ? 9 HELX_P HELX_P15 15 LEU B 2 ? GLY B 8 ? LEU C 499 GLY C 505 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 196 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 196 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 455 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 455 _struct_conn.ptnr2_symmetry 10_554 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 110 ? ASN A 111 ? TYR A 369 ASN A 370 A 2 THR A 116 ? PHE A 119 ? THR A 375 PHE A 378 A 3 LYS A 122 ? GLY A 124 ? LYS A 381 GLY A 383 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 111 ? N ASN A 370 O THR A 116 ? O THR A 375 A 2 3 N VAL A 117 ? N VAL A 376 O GLY A 124 ? O GLY A 383 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE 4D8 A 900' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLN A 27 ? GLN A 286 . ? 1_555 ? 2 AC1 8 LEU A 28 ? LEU A 287 . ? 1_555 ? 3 AC1 8 TRP A 58 ? TRP A 317 . ? 1_555 ? 4 AC1 8 CYS A 61 ? CYS A 320 . ? 1_555 ? 5 AC1 8 HIS A 64 ? HIS A 323 . ? 1_555 ? 6 AC1 8 LEU A 65 ? LEU A 324 . ? 1_555 ? 7 AC1 8 MET A 106 ? MET A 365 . ? 1_555 ? 8 AC1 8 ILE A 138 ? ILE A 397 . ? 1_555 ? # _database_PDB_matrix.entry_id 4S14 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4S14 _atom_sites.fract_transf_matrix[1][1] 0.006322 _atom_sites.fract_transf_matrix[1][2] 0.003650 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007300 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 260 ? ? ? A . n A 1 2 SER 2 261 ? ? ? A . n A 1 3 ALA 3 262 ? ? ? A . n A 1 4 PRO 4 263 263 PRO PRO A . n A 1 5 TYR 5 264 264 TYR TYR A . n A 1 6 ALA 6 265 265 ALA ALA A . n A 1 7 SER 7 266 266 SER SER A . n A 1 8 LEU 8 267 267 LEU LEU A . n A 1 9 THR 9 268 268 THR THR A . n A 1 10 GLU 10 269 269 GLU GLU A . n A 1 11 ILE 11 270 270 ILE ILE A . n A 1 12 GLU 12 271 271 GLU GLU A . n A 1 13 HIS 13 272 272 HIS HIS A . n A 1 14 LEU 14 273 273 LEU LEU A . n A 1 15 VAL 15 274 274 VAL VAL A . n A 1 16 GLN 16 275 275 GLN GLN A . n A 1 17 SER 17 276 276 SER SER A . n A 1 18 VAL 18 277 277 VAL VAL A . n A 1 19 CYS 19 278 278 CYS CYS A . n A 1 20 LYS 20 279 279 LYS LYS A . n A 1 21 SER 21 280 280 SER SER A . n A 1 22 TYR 22 281 281 TYR TYR A . n A 1 23 ARG 23 282 282 ARG ARG A . n A 1 24 GLU 24 283 283 GLU GLU A . n A 1 25 THR 25 284 284 THR THR A . n A 1 26 CYS 26 285 285 CYS CYS A . n A 1 27 GLN 27 286 286 GLN GLN A . n A 1 28 LEU 28 287 287 LEU LEU A . n A 1 29 ARG 29 288 288 ARG ARG A . n A 1 30 LEU 30 289 289 LEU LEU A . n A 1 31 GLU 31 290 290 GLU GLU A . n A 1 32 ASP 32 291 291 ASP ASP A . n A 1 33 LEU 33 292 292 LEU LEU A . n A 1 34 LEU 34 293 293 LEU LEU A . n A 1 35 ARG 35 294 294 ARG ARG A . n A 1 36 GLN 36 295 295 GLN GLN A . n A 1 37 ARG 37 296 296 ARG ARG A . n A 1 38 SER 38 297 297 SER SER A . n A 1 39 ASN 39 298 298 ASN ASN A . n A 1 40 ILE 40 299 299 ILE ILE A . n A 1 41 PHE 41 300 300 PHE PHE A . n A 1 42 SER 42 301 301 SER SER A . n A 1 43 ARG 43 302 302 ARG ARG A . n A 1 44 GLU 44 303 303 GLU GLU A . n A 1 45 GLU 45 304 304 GLU GLU A . n A 1 46 VAL 46 305 305 VAL VAL A . n A 1 47 THR 47 306 306 THR THR A . n A 1 48 GLY 48 307 307 GLY GLY A . n A 1 49 TYR 49 308 308 TYR TYR A . n A 1 50 GLN 50 309 309 GLN GLN A . n A 1 51 ARG 51 310 310 ARG ARG A . n A 1 52 LYS 52 311 311 LYS LYS A . n A 1 53 SER 53 312 312 SER SER A . n A 1 54 MET 54 313 313 MET MET A . n A 1 55 TRP 55 314 314 TRP TRP A . n A 1 56 GLU 56 315 315 GLU GLU A . n A 1 57 MET 57 316 316 MET MET A . n A 1 58 TRP 58 317 317 TRP TRP A . n A 1 59 GLU 59 318 318 GLU GLU A . n A 1 60 ARG 60 319 319 ARG ARG A . n A 1 61 CYS 61 320 320 CYS CYS A . n A 1 62 ALA 62 321 321 ALA ALA A . n A 1 63 HIS 63 322 322 HIS HIS A . n A 1 64 HIS 64 323 323 HIS HIS A . n A 1 65 LEU 65 324 324 LEU LEU A . n A 1 66 THR 66 325 325 THR THR A . n A 1 67 GLU 67 326 326 GLU GLU A . n A 1 68 ALA 68 327 327 ALA ALA A . n A 1 69 ILE 69 328 328 ILE ILE A . n A 1 70 GLN 70 329 329 GLN GLN A . n A 1 71 TYR 71 330 330 TYR TYR A . n A 1 72 VAL 72 331 331 VAL VAL A . n A 1 73 VAL 73 332 332 VAL VAL A . n A 1 74 GLU 74 333 333 GLU GLU A . n A 1 75 PHE 75 334 334 PHE PHE A . n A 1 76 ALA 76 335 335 ALA ALA A . n A 1 77 LYS 77 336 336 LYS LYS A . n A 1 78 ARG 78 337 337 ARG ARG A . n A 1 79 LEU 79 338 338 LEU LEU A . n A 1 80 SER 80 339 339 SER SER A . n A 1 81 GLY 81 340 340 GLY GLY A . n A 1 82 PHE 82 341 341 PHE PHE A . n A 1 83 MET 83 342 342 MET MET A . n A 1 84 GLU 84 343 343 GLU GLU A . n A 1 85 LEU 85 344 344 LEU LEU A . n A 1 86 CYS 86 345 345 CYS CYS A . n A 1 87 GLN 87 346 346 GLN GLN A . n A 1 88 ASN 88 347 347 ASN ASN A . n A 1 89 ASP 89 348 348 ASP ASP A . n A 1 90 GLN 90 349 349 GLN GLN A . n A 1 91 ILE 91 350 350 ILE ILE A . n A 1 92 VAL 92 351 351 VAL VAL A . n A 1 93 LEU 93 352 352 LEU LEU A . n A 1 94 LEU 94 353 353 LEU LEU A . n A 1 95 LYS 95 354 354 LYS LYS A . n A 1 96 ALA 96 355 355 ALA ALA A . n A 1 97 GLY 97 356 356 GLY GLY A . n A 1 98 ALA 98 357 357 ALA ALA A . n A 1 99 MET 99 358 358 MET MET A . n A 1 100 GLU 100 359 359 GLU GLU A . n A 1 101 VAL 101 360 360 VAL VAL A . n A 1 102 VAL 102 361 361 VAL VAL A . n A 1 103 LEU 103 362 362 LEU LEU A . n A 1 104 VAL 104 363 363 VAL VAL A . n A 1 105 ARG 105 364 364 ARG ARG A . n A 1 106 MET 106 365 365 MET MET A . n A 1 107 CYS 107 366 366 CYS CYS A . n A 1 108 ARG 108 367 367 ARG ARG A . n A 1 109 ALA 109 368 368 ALA ALA A . n A 1 110 TYR 110 369 369 TYR TYR A . n A 1 111 ASN 111 370 370 ASN ASN A . n A 1 112 ALA 112 371 371 ALA ALA A . n A 1 113 ASP 113 372 372 ASP ASP A . n A 1 114 ASN 114 373 373 ASN ASN A . n A 1 115 ARG 115 374 374 ARG ARG A . n A 1 116 THR 116 375 375 THR THR A . n A 1 117 VAL 117 376 376 VAL VAL A . n A 1 118 PHE 118 377 377 PHE PHE A . n A 1 119 PHE 119 378 378 PHE PHE A . n A 1 120 GLU 120 379 379 GLU GLU A . n A 1 121 GLY 121 380 380 GLY GLY A . n A 1 122 LYS 122 381 381 LYS LYS A . n A 1 123 TYR 123 382 382 TYR TYR A . n A 1 124 GLY 124 383 383 GLY GLY A . n A 1 125 GLY 125 384 384 GLY GLY A . n A 1 126 MET 126 385 385 MET MET A . n A 1 127 GLU 127 386 386 GLU GLU A . n A 1 128 LEU 128 387 387 LEU LEU A . n A 1 129 PHE 129 388 388 PHE PHE A . n A 1 130 ARG 130 389 389 ARG ARG A . n A 1 131 ALA 131 390 390 ALA ALA A . n A 1 132 LEU 132 391 391 LEU LEU A . n A 1 133 GLY 133 392 392 GLY GLY A . n A 1 134 CYS 134 393 393 CYS CYS A . n A 1 135 SER 135 394 394 SER SER A . n A 1 136 GLU 136 395 395 GLU GLU A . n A 1 137 LEU 137 396 396 LEU LEU A . n A 1 138 ILE 138 397 397 ILE ILE A . n A 1 139 SER 139 398 398 SER SER A . n A 1 140 SER 140 399 399 SER SER A . n A 1 141 ILE 141 400 400 ILE ILE A . n A 1 142 PHE 142 401 401 PHE PHE A . n A 1 143 ASP 143 402 402 ASP ASP A . n A 1 144 PHE 144 403 403 PHE PHE A . n A 1 145 SER 145 404 404 SER SER A . n A 1 146 HIS 146 405 405 HIS HIS A . n A 1 147 SER 147 406 406 SER SER A . n A 1 148 LEU 148 407 407 LEU LEU A . n A 1 149 SER 149 408 408 SER SER A . n A 1 150 ALA 150 409 409 ALA ALA A . n A 1 151 LEU 151 410 410 LEU LEU A . n A 1 152 HIS 152 411 411 HIS HIS A . n A 1 153 PHE 153 412 412 PHE PHE A . n A 1 154 SER 154 413 413 SER SER A . n A 1 155 GLU 155 414 414 GLU GLU A . n A 1 156 ASP 156 415 415 ASP ASP A . n A 1 157 GLU 157 416 416 GLU GLU A . n A 1 158 ILE 158 417 417 ILE ILE A . n A 1 159 ALA 159 418 418 ALA ALA A . n A 1 160 LEU 160 419 419 LEU LEU A . n A 1 161 TYR 161 420 420 TYR TYR A . n A 1 162 THR 162 421 421 THR THR A . n A 1 163 ALA 163 422 422 ALA ALA A . n A 1 164 LEU 164 423 423 LEU LEU A . n A 1 165 VAL 165 424 424 VAL VAL A . n A 1 166 LEU 166 425 425 LEU LEU A . n A 1 167 ILE 167 426 426 ILE ILE A . n A 1 168 ASN 168 427 427 ASN ASN A . n A 1 169 ALA 169 428 428 ALA ALA A . n A 1 170 HIS 170 429 429 HIS HIS A . n A 1 171 ARG 171 430 430 ARG ARG A . n A 1 172 PRO 172 431 431 PRO PRO A . n A 1 173 GLY 173 432 432 GLY GLY A . n A 1 174 LEU 174 433 433 LEU LEU A . n A 1 175 GLN 175 434 434 GLN GLN A . n A 1 176 GLU 176 435 435 GLU GLU A . n A 1 177 LYS 177 436 436 LYS LYS A . n A 1 178 ARG 178 437 437 ARG ARG A . n A 1 179 LYS 179 438 438 LYS LYS A . n A 1 180 VAL 180 439 439 VAL VAL A . n A 1 181 GLU 181 440 440 GLU GLU A . n A 1 182 GLN 182 441 441 GLN GLN A . n A 1 183 LEU 183 442 442 LEU LEU A . n A 1 184 GLN 184 443 443 GLN GLN A . n A 1 185 TYR 185 444 444 TYR TYR A . n A 1 186 ASN 186 445 445 ASN ASN A . n A 1 187 LEU 187 446 446 LEU LEU A . n A 1 188 GLU 188 447 447 GLU GLU A . n A 1 189 LEU 189 448 448 LEU LEU A . n A 1 190 ALA 190 449 449 ALA ALA A . n A 1 191 PHE 191 450 450 PHE PHE A . n A 1 192 HIS 192 451 451 HIS HIS A . n A 1 193 HIS 193 452 452 HIS HIS A . n A 1 194 HIS 194 453 453 HIS HIS A . n A 1 195 LEU 195 454 454 LEU LEU A . n A 1 196 CYS 196 455 455 CYS CYS A . n A 1 197 LYS 197 456 456 LYS LYS A . n A 1 198 THR 198 457 457 THR THR A . n A 1 199 HIS 199 458 458 HIS HIS A . n A 1 200 ARG 200 459 459 ARG ARG A . n A 1 201 GLN 201 460 460 GLN GLN A . n A 1 202 SER 202 461 461 SER SER A . n A 1 203 ILE 203 462 462 ILE ILE A . n A 1 204 LEU 204 463 463 LEU LEU A . n A 1 205 ALA 205 464 464 ALA ALA A . n A 1 206 LYS 206 465 465 LYS LYS A . n A 1 207 LEU 207 466 466 LEU LEU A . n A 1 208 PRO 208 467 467 PRO PRO A . n A 1 209 PRO 209 468 468 PRO PRO A . n A 1 210 LYS 210 469 469 LYS LYS A . n A 1 211 GLY 211 470 470 GLY GLY A . n A 1 212 LYS 212 471 471 LYS LYS A . n A 1 213 LEU 213 472 472 LEU LEU A . n A 1 214 ARG 214 473 473 ARG ARG A . n A 1 215 SER 215 474 474 SER SER A . n A 1 216 LEU 216 475 475 LEU LEU A . n A 1 217 CYS 217 476 476 CYS CYS A . n A 1 218 SER 218 477 477 SER SER A . n A 1 219 GLN 219 478 478 GLN GLN A . n A 1 220 HIS 220 479 479 HIS HIS A . n A 1 221 VAL 221 480 480 VAL VAL A . n A 1 222 GLU 222 481 481 GLU GLU A . n A 1 223 ARG 223 482 482 ARG ARG A . n A 1 224 LEU 224 483 483 LEU LEU A . n A 1 225 GLN 225 484 484 GLN GLN A . n A 1 226 ILE 226 485 485 ILE ILE A . n A 1 227 PHE 227 486 486 PHE PHE A . n A 1 228 GLN 228 487 487 GLN GLN A . n A 1 229 HIS 229 488 488 HIS HIS A . n A 1 230 LEU 230 489 489 LEU LEU A . n A 1 231 HIS 231 490 490 HIS HIS A . n A 1 232 PRO 232 491 491 PRO PRO A . n A 1 233 ILE 233 492 492 ILE ILE A . n A 1 234 VAL 234 493 493 VAL VAL A . n A 1 235 VAL 235 494 494 VAL VAL A . n A 1 236 GLN 236 495 495 GLN GLN A . n A 1 237 ALA 237 496 496 ALA ALA A . n A 1 238 ALA 238 497 497 ALA ALA A . n A 1 239 PHE 239 498 498 PHE PHE A . n A 1 240 PRO 240 499 499 PRO PRO A . n A 1 241 PRO 241 500 500 PRO PRO A . n A 1 242 LEU 242 501 501 LEU LEU A . n A 1 243 TYR 243 502 502 TYR TYR A . n A 1 244 LYS 244 503 503 LYS LYS A . n A 1 245 GLU 245 504 504 GLU GLU A . n A 1 246 LEU 246 505 505 LEU LEU A . n A 1 247 PHE 247 506 506 PHE PHE A . n A 1 248 SER 248 507 507 SER SER A . n A 1 249 THR 249 508 ? ? ? A . n A 1 250 GLU 250 509 ? ? ? A . n A 1 251 THR 251 510 ? ? ? A . n A 1 252 GLU 252 511 ? ? ? A . n A 1 253 SER 253 512 ? ? ? A . n A 1 254 PRO 254 513 ? ? ? A . n A 1 255 VAL 255 514 ? ? ? A . n A 1 256 GLY 256 515 ? ? ? A . n A 1 257 LEU 257 516 ? ? ? A . n A 1 258 SER 258 517 ? ? ? A . n A 1 259 LYS 259 518 ? ? ? A . n B 2 1 THR 1 498 498 THR THR C . n B 2 2 LEU 2 499 499 LEU LEU C . n B 2 3 LEU 3 500 500 LEU LEU C . n B 2 4 GLN 4 501 501 GLN GLN C . n B 2 5 LEU 5 502 502 LEU LEU C . n B 2 6 LEU 6 503 503 LEU LEU C . n B 2 7 LEU 7 504 504 LEU LEU C . n B 2 8 GLY 8 505 505 GLY GLY C . n B 2 9 HIS 9 506 506 HIS HIS C . n B 2 10 LYS 10 507 ? ? ? C . n B 2 11 ASN 11 508 ? ? ? C . n B 2 12 GLU 12 509 ? ? ? C . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dodecameric 12 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4,5,6 A,B,C 2 1 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14880 ? 1 MORE -81 ? 1 'SSA (A^2)' 65420 ? 2 'ABSA (A^2)' 910 ? 2 MORE -8 ? 2 'SSA (A^2)' 12470 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 79.0895000000 0.8660254038 -0.5000000000 0.0000000000 -136.9870323452 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 158.1790000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -64.9005000000 5 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 158.1790000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -64.9005000000 6 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5000000000 0.8660254038 0.0000000000 79.0895000000 0.8660254038 -0.5000000000 0.0000000000 -136.9870323452 0.0000000000 0.0000000000 -1.0000000000 -64.9005000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-11 2 'Structure model' 1 1 2015-02-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 51.1448 -45.2917 -14.6793 0.4956 0.4769 0.5069 -0.0667 0.1407 0.1353 3.2159 1.7597 2.5258 1.1240 -2.2282 -0.9744 0.0961 -0.1122 0.1056 0.3015 0.0855 0.4381 0.1623 -0.2800 -0.1253 'X-RAY DIFFRACTION' 2 ? refined 53.8567 -35.4163 2.4844 0.7155 0.9800 0.5343 -0.1401 0.3113 -0.0828 2.3256 2.5738 3.8299 1.6016 1.2461 -0.6676 0.0829 -0.3314 0.2094 0.1524 -0.2190 0.0306 -0.2238 0.0637 -0.4134 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 264 ? ? -132.26 -31.92 2 1 GLN A 286 ? ? 56.43 -89.13 3 1 CYS A 393 ? ? -108.09 57.34 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 260 ? A GLY 1 2 1 Y 1 A SER 261 ? A SER 2 3 1 Y 1 A ALA 262 ? A ALA 3 4 1 Y 1 A THR 508 ? A THR 249 5 1 Y 1 A GLU 509 ? A GLU 250 6 1 Y 1 A THR 510 ? A THR 251 7 1 Y 1 A GLU 511 ? A GLU 252 8 1 Y 1 A SER 512 ? A SER 253 9 1 Y 1 A PRO 513 ? A PRO 254 10 1 Y 1 A VAL 514 ? A VAL 255 11 1 Y 1 A GLY 515 ? A GLY 256 12 1 Y 1 A LEU 516 ? A LEU 257 13 1 Y 1 A SER 517 ? A SER 258 14 1 Y 1 A LYS 518 ? A LYS 259 15 1 Y 1 C LYS 507 ? B LYS 10 16 1 Y 1 C ASN 508 ? B ASN 11 17 1 Y 1 C GLU 509 ? B GLU 12 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '(3beta,4alpha,5beta,14beta)-3-hydroxy-4-methylcholesta-8,24-diene-4-carboxylic acid' _pdbx_entity_nonpoly.comp_id 4D8 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 4D8 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 900 _pdbx_nonpoly_scheme.auth_seq_num 900 _pdbx_nonpoly_scheme.pdb_mon_id 4D8 _pdbx_nonpoly_scheme.auth_mon_id 4D8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . #