data_4S1N # _entry.id 4S1N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB088066 PDB 4S1N WWPDB D_1000088066 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id CSGID-IDP06282 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4S1N _pdbx_database_status.recvd_initial_deposition_date 2015-01-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Zhou, M.' 2 'Kwon, K.' 3 'Anderson, W.F.' 4 'Joachimiak, A.' 5 'Center for Structural Genomics of Infectious Diseases (CSGID)' 6 # _citation.id primary _citation.title 'The crystal structure of phosphoribosylglycinamide formyltransferase from Streptococcus pneumoniae TIGR4' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Zhou, M.' 2 primary 'Kwon, K.' 3 primary 'Anderson, W.F.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 4S1N _cell.length_a 43.206 _cell.length_b 46.227 _cell.length_c 91.152 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4S1N _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphoribosylglycinamide formyltransferase' 20633.918 1 2.1.2.2 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)KKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQLGVLSYAFELKEFESKADYEAALVELLEEHQ IDLVCLAGY(MSE)KIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVP RLADDTIDRFEARIHEAEYRLYPEVVKALFTD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMKKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQLGVLSYAFELKEFESKADYEAALVELLEEHQIDLV CLAGYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTID RFEARIHEAEYRLYPEVVKALFTD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CSGID-IDP06282 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LYS n 1 6 LYS n 1 7 ILE n 1 8 ALA n 1 9 VAL n 1 10 PHE n 1 11 ALA n 1 12 SER n 1 13 GLY n 1 14 ASN n 1 15 GLY n 1 16 SER n 1 17 ASN n 1 18 PHE n 1 19 GLN n 1 20 VAL n 1 21 ILE n 1 22 ALA n 1 23 GLU n 1 24 GLU n 1 25 PHE n 1 26 PRO n 1 27 VAL n 1 28 GLU n 1 29 PHE n 1 30 VAL n 1 31 PHE n 1 32 SER n 1 33 ASP n 1 34 HIS n 1 35 ARG n 1 36 ASP n 1 37 ALA n 1 38 TYR n 1 39 VAL n 1 40 LEU n 1 41 GLU n 1 42 ARG n 1 43 ALA n 1 44 LYS n 1 45 GLN n 1 46 LEU n 1 47 GLY n 1 48 VAL n 1 49 LEU n 1 50 SER n 1 51 TYR n 1 52 ALA n 1 53 PHE n 1 54 GLU n 1 55 LEU n 1 56 LYS n 1 57 GLU n 1 58 PHE n 1 59 GLU n 1 60 SER n 1 61 LYS n 1 62 ALA n 1 63 ASP n 1 64 TYR n 1 65 GLU n 1 66 ALA n 1 67 ALA n 1 68 LEU n 1 69 VAL n 1 70 GLU n 1 71 LEU n 1 72 LEU n 1 73 GLU n 1 74 GLU n 1 75 HIS n 1 76 GLN n 1 77 ILE n 1 78 ASP n 1 79 LEU n 1 80 VAL n 1 81 CYS n 1 82 LEU n 1 83 ALA n 1 84 GLY n 1 85 TYR n 1 86 MSE n 1 87 LYS n 1 88 ILE n 1 89 VAL n 1 90 GLY n 1 91 PRO n 1 92 THR n 1 93 LEU n 1 94 LEU n 1 95 SER n 1 96 ALA n 1 97 TYR n 1 98 GLU n 1 99 GLY n 1 100 ARG n 1 101 ILE n 1 102 VAL n 1 103 ASN n 1 104 ILE n 1 105 HIS n 1 106 PRO n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 PRO n 1 111 GLU n 1 112 PHE n 1 113 PRO n 1 114 GLY n 1 115 ALA n 1 116 HIS n 1 117 GLY n 1 118 ILE n 1 119 GLU n 1 120 ASP n 1 121 ALA n 1 122 TRP n 1 123 ASN n 1 124 ALA n 1 125 GLY n 1 126 VAL n 1 127 GLY n 1 128 GLN n 1 129 SER n 1 130 GLY n 1 131 VAL n 1 132 THR n 1 133 ILE n 1 134 HIS n 1 135 TRP n 1 136 VAL n 1 137 ASP n 1 138 SER n 1 139 GLY n 1 140 VAL n 1 141 ASP n 1 142 THR n 1 143 GLY n 1 144 GLN n 1 145 VAL n 1 146 ILE n 1 147 LYS n 1 148 GLN n 1 149 VAL n 1 150 ARG n 1 151 VAL n 1 152 PRO n 1 153 ARG n 1 154 LEU n 1 155 ALA n 1 156 ASP n 1 157 ASP n 1 158 THR n 1 159 ILE n 1 160 ASP n 1 161 ARG n 1 162 PHE n 1 163 GLU n 1 164 ALA n 1 165 ARG n 1 166 ILE n 1 167 HIS n 1 168 GLU n 1 169 ALA n 1 170 GLU n 1 171 TYR n 1 172 ARG n 1 173 LEU n 1 174 TYR n 1 175 PRO n 1 176 GLU n 1 177 VAL n 1 178 VAL n 1 179 LYS n 1 180 ALA n 1 181 LEU n 1 182 PHE n 1 183 THR n 1 184 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'purN, SP_0048' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG53 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97TA1_STRPN _struct_ref.pdbx_db_accession Q97TA1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQLGVLSYAFELKEFESKADYEAALVELLEEHQIDLVCLA GYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTIDRFE ARIHEAEYRLYPEVVKALFTD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4S1N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97TA1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4S1N SER A 1 ? UNP Q97TA1 ? ? 'EXPRESSION TAG' -2 1 1 4S1N ASN A 2 ? UNP Q97TA1 ? ? 'EXPRESSION TAG' -1 2 1 4S1N ALA A 3 ? UNP Q97TA1 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4S1N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.16M Calcium Acetate, 0.08M Sodium Cacodylate:HCl, 14.4%(w/v) PEG8000, 20% (v/v)Glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2014-10-09 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 4S1N _reflns.observed_criterion_sigma_I -5 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 41.3 _reflns.d_resolution_high 2.70 _reflns.number_obs 5384 _reflns.number_all 5384 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.142 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.03 _reflns.B_iso_Wilson_estimate 35.8 _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.690 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.57 _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 262 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4S1N _refine.ls_number_reflns_obs 5145 _refine.ls_number_reflns_all 5145 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.30 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 95.45 _refine.ls_R_factor_obs 0.2041 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2004 _refine.ls_R_factor_R_free 0.2758 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 262 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.41 _refine.pdbx_overall_phase_error 25.51 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1392 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 1399 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 41.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.001 ? ? 1424 ? 'X-RAY DIFFRACTION' f_angle_d 0.485 ? ? 1935 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 9.439 ? ? 504 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.030 ? ? 216 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 251 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.6968 3.3974 2291 0.2416 92.00 0.3493 . . 119 . . . . 'X-RAY DIFFRACTION' . 3.3974 41.2330 2592 0.1824 99.00 0.2470 . . 143 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4S1N _struct.title 'The crystal structure of phosphoribosylglycinamide formyltransferase from Streptococcus pneumoniae TIGR4' _struct.pdbx_descriptor 'Phosphoribosylglycinamide formyltransferase (E.C.2.1.2.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4S1N _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. It is predicted to be monomeric.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 15 ? PHE A 25 ? GLY A 12 PHE A 22 1 ? 11 HELX_P HELX_P2 2 TYR A 38 ? GLY A 47 ? TYR A 35 GLY A 44 1 ? 10 HELX_P HELX_P3 3 GLU A 54 ? PHE A 58 ? GLU A 51 PHE A 55 5 ? 5 HELX_P HELX_P4 4 SER A 60 ? HIS A 75 ? SER A 57 HIS A 72 1 ? 16 HELX_P HELX_P5 5 GLY A 90 ? SER A 95 ? GLY A 87 SER A 92 1 ? 6 HELX_P HELX_P6 6 HIS A 116 ? GLY A 125 ? HIS A 113 GLY A 122 1 ? 10 HELX_P HELX_P7 7 THR A 158 ? PHE A 182 ? THR A 155 PHE A 179 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A LYS 5 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A TYR 85 C ? ? ? 1_555 A MSE 86 N ? ? A TYR 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A MSE 86 C ? ? ? 1_555 A LYS 87 N ? ? A MSE 83 A LYS 84 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 109 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 106 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 110 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 107 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.73 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 50 ? ALA A 52 ? SER A 47 ALA A 49 A 2 VAL A 27 ? SER A 32 ? VAL A 24 SER A 29 A 3 ILE A 7 ? PHE A 10 ? ILE A 4 PHE A 7 A 4 LEU A 79 ? LEU A 82 ? LEU A 76 LEU A 79 A 5 ILE A 101 ? HIS A 105 ? ILE A 98 HIS A 102 A 6 VAL A 131 ? TRP A 135 ? VAL A 128 TRP A 132 A 7 VAL A 145 ? VAL A 149 ? VAL A 142 VAL A 146 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 51 ? O TYR A 48 N VAL A 30 ? N VAL A 27 A 2 3 O PHE A 31 ? O PHE A 28 N VAL A 9 ? N VAL A 6 A 3 4 N ALA A 8 ? N ALA A 5 O CYS A 81 ? O CYS A 78 A 4 5 N LEU A 82 ? N LEU A 79 O VAL A 102 ? O VAL A 99 A 5 6 N HIS A 105 ? N HIS A 102 O THR A 132 ? O THR A 129 A 6 7 N ILE A 133 ? N ILE A 130 O ILE A 146 ? O ILE A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 202' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 HIS A 105 ? HIS A 102 . ? 1_555 ? 2 AC2 3 GLY A 15 ? GLY A 12 . ? 1_555 ? 3 AC2 3 SER A 16 ? SER A 13 . ? 1_555 ? 4 AC2 3 ASN A 17 ? ASN A 14 . ? 1_555 ? 5 AC3 1 GLU A 170 ? GLU A 167 . ? 1_555 ? # _database_PDB_matrix.entry_id 4S1N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4S1N _atom_sites.fract_transf_matrix[1][1] 0.023145 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021632 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010971 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 LYS 6 3 3 LYS LYS A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 ALA 8 5 5 ALA ALA A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 SER 12 9 9 SER SER A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 ASN 14 11 11 ASN ASN A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 PHE 18 15 15 PHE PHE A . n A 1 19 GLN 19 16 16 GLN GLN A . n A 1 20 VAL 20 17 17 VAL VAL A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 GLU 24 21 21 GLU GLU A . n A 1 25 PHE 25 22 22 PHE PHE A . n A 1 26 PRO 26 23 23 PRO PRO A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 PHE 29 26 26 PHE PHE A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 ASP 33 30 30 ASP ASP A . n A 1 34 HIS 34 31 31 HIS HIS A . n A 1 35 ARG 35 32 32 ARG ARG A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 TYR 38 35 35 TYR TYR A . n A 1 39 VAL 39 36 36 VAL VAL A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 GLU 41 38 38 GLU GLU A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 TYR 51 48 48 TYR TYR A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 PHE 53 50 50 PHE PHE A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 PHE 58 55 55 PHE PHE A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 TYR 64 61 61 TYR TYR A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 GLU 70 67 67 GLU GLU A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 LEU 72 69 69 LEU LEU A . n A 1 73 GLU 73 70 70 GLU GLU A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 HIS 75 72 72 HIS HIS A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 CYS 81 78 78 CYS CYS A . n A 1 82 LEU 82 79 79 LEU LEU A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 TYR 85 82 82 TYR TYR A . n A 1 86 MSE 86 83 83 MSE MSE A . n A 1 87 LYS 87 84 84 LYS LYS A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 PRO 91 88 88 PRO PRO A . n A 1 92 THR 92 89 89 THR THR A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 GLY 99 96 96 GLY GLY A . n A 1 100 ARG 100 97 97 ARG ARG A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 ASN 103 100 100 ASN ASN A . n A 1 104 ILE 104 101 101 ILE ILE A . n A 1 105 HIS 105 102 102 HIS HIS A . n A 1 106 PRO 106 103 103 PRO PRO A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 TYR 108 105 105 TYR TYR A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 PRO 110 107 107 PRO PRO A . n A 1 111 GLU 111 108 108 GLU GLU A . n A 1 112 PHE 112 109 109 PHE PHE A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 GLY 114 111 111 GLY GLY A . n A 1 115 ALA 115 112 112 ALA ALA A . n A 1 116 HIS 116 113 113 HIS HIS A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 ILE 118 115 115 ILE ILE A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 TRP 122 119 119 TRP TRP A . n A 1 123 ASN 123 120 120 ASN ASN A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 GLY 127 124 124 GLY GLY A . n A 1 128 GLN 128 125 125 GLN GLN A . n A 1 129 SER 129 126 126 SER SER A . n A 1 130 GLY 130 127 127 GLY GLY A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 THR 132 129 129 THR THR A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 HIS 134 131 131 HIS HIS A . n A 1 135 TRP 135 132 132 TRP TRP A . n A 1 136 VAL 136 133 133 VAL VAL A . n A 1 137 ASP 137 134 134 ASP ASP A . n A 1 138 SER 138 135 135 SER SER A . n A 1 139 GLY 139 136 136 GLY GLY A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 ASP 141 138 138 ASP ASP A . n A 1 142 THR 142 139 139 THR THR A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 VAL 145 142 142 VAL VAL A . n A 1 146 ILE 146 143 143 ILE ILE A . n A 1 147 LYS 147 144 144 LYS LYS A . n A 1 148 GLN 148 145 145 GLN GLN A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 ARG 150 147 147 ARG ARG A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 PRO 152 149 149 PRO PRO A . n A 1 153 ARG 153 150 150 ARG ARG A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 ALA 155 152 152 ALA ALA A . n A 1 156 ASP 156 153 153 ASP ASP A . n A 1 157 ASP 157 154 154 ASP ASP A . n A 1 158 THR 158 155 155 THR THR A . n A 1 159 ILE 159 156 156 ILE ILE A . n A 1 160 ASP 160 157 157 ASP ASP A . n A 1 161 ARG 161 158 158 ARG ARG A . n A 1 162 PHE 162 159 159 PHE PHE A . n A 1 163 GLU 163 160 160 GLU GLU A . n A 1 164 ALA 164 161 161 ALA ALA A . n A 1 165 ARG 165 162 162 ARG ARG A . n A 1 166 ILE 166 163 163 ILE ILE A . n A 1 167 HIS 167 164 164 HIS HIS A . n A 1 168 GLU 168 165 165 GLU GLU A . n A 1 169 ALA 169 166 166 ALA ALA A . n A 1 170 GLU 170 167 167 GLU GLU A . n A 1 171 TYR 171 168 168 TYR TYR A . n A 1 172 ARG 172 169 169 ARG ARG A . n A 1 173 LEU 173 170 170 LEU LEU A . n A 1 174 TYR 174 171 171 TYR TYR A . n A 1 175 PRO 175 172 172 PRO PRO A . n A 1 176 GLU 176 173 173 GLU GLU A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 VAL 178 175 175 VAL VAL A . n A 1 179 LYS 179 176 176 LYS LYS A . n A 1 180 ALA 180 177 177 ALA ALA A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 PHE 182 179 179 PHE PHE A . n A 1 183 THR 183 180 180 THR THR A . n A 1 184 ASP 184 181 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 1 CL CL A . C 2 CL 1 202 2 CL CL A . D 2 CL 1 203 3 CL CL A . E 3 HOH 1 301 1 HOH HOH A . E 3 HOH 2 302 2 HOH HOH A . E 3 HOH 3 303 3 HOH HOH A . E 3 HOH 4 304 4 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 83 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-28 2 'Structure model' 1 1 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -1.9720 4.3902 -5.6231 0.5363 0.4531 0.6478 -0.0382 -0.1426 -0.0429 4.9878 7.8246 2.0383 -3.9115 3.6808 -8.7255 -0.2517 -0.5516 -0.7661 1.3621 0.1918 -0.8972 -2.3048 0.1077 0.3670 'X-RAY DIFFRACTION' 2 ? refined -5.1073 12.8583 -6.0901 0.4180 0.3891 0.4101 0.0726 -0.1066 -0.0078 8.1312 3.9815 7.1842 -3.8881 3.9039 -4.0351 0.3346 -0.7525 -0.7915 0.6802 0.4420 -0.6230 -1.6014 -0.8351 -0.0206 'X-RAY DIFFRACTION' 3 ? refined 1.8023 8.8140 -12.5208 0.3001 0.3436 0.4383 -0.0310 0.0057 0.0339 7.6182 7.0200 7.7422 -4.4397 2.1412 2.4790 -0.0080 -0.0437 0.6744 0.3597 -0.0339 -0.8249 -0.0027 -0.6806 -0.0287 'X-RAY DIFFRACTION' 4 ? refined 4.7251 -4.5141 -14.8476 0.3566 0.3807 0.4860 0.0285 -0.0119 0.0698 2.6675 7.9222 8.7162 0.6863 -0.9078 7.9000 0.0630 -0.0093 -0.0195 -0.2061 0.2220 -0.9734 0.1454 0.4701 -0.2187 'X-RAY DIFFRACTION' 5 ? refined -5.1218 -3.8954 -8.0391 0.4298 0.3481 0.3539 -0.0186 0.0238 0.0605 3.9896 8.5315 2.9930 2.1442 -2.0491 2.4905 -0.0897 -0.1983 -0.3702 0.3113 -0.0448 -0.1089 0.3783 -0.4393 0.1565 'X-RAY DIFFRACTION' 6 ? refined -22.5481 3.4312 -14.4362 0.5078 0.5427 0.5616 -0.0485 -0.0705 0.0081 6.8122 5.7114 3.3296 -1.3077 3.0059 -1.6531 0.0569 0.5167 -0.3378 -0.8162 0.5267 1.1897 -0.0297 -0.2986 -0.4939 'X-RAY DIFFRACTION' 7 ? refined -15.5170 -7.8873 -8.8266 0.6761 0.9951 1.2414 -0.1432 0.2604 -0.4273 9.1075 4.7272 7.1607 -5.4574 -1.0771 3.8449 -0.0220 2.4186 -2.0201 1.1751 -1.6574 2.3472 1.7258 -2.0449 1.9985 'X-RAY DIFFRACTION' 8 ? refined -24.9973 10.3850 -11.1171 0.6248 0.6747 0.6649 -0.1097 -0.2007 -0.0121 3.2684 3.4206 1.6753 -1.9956 -1.8987 2.2863 -0.0166 0.5033 -0.0392 -0.7101 -0.2219 1.6116 -0.4373 0.1640 0.6030 'X-RAY DIFFRACTION' 9 ? refined -15.4319 11.3461 -7.5934 0.5417 0.4215 0.4006 -0.0380 0.0987 -0.0408 9.3168 4.3490 5.0860 -2.2481 5.8542 0.9985 0.1634 0.1014 -0.3371 -0.0876 0.2290 0.3468 0.4437 0.2088 -0.1318 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 12 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 13 through 21 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 22 through 43 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 44 through 71 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 72 through 102 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 103 through 132 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 133 through 141 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 142 through 155 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 156 through 180 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing Builder/HKL3000 ? 2 MLPHARE phasing Builder/HKL3000 ? 3 DM 'model building' Builder/HKL3000 ? 4 DENZO 'data reduction' Builder/HKL3000 ? 5 SCALEPACK 'data scaling' Builder/HKL3000 ? 6 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 DM phasing Builder/HKL3000 ? 10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 80 ? ? -110.04 75.79 2 1 MSE A 83 ? ? -88.52 43.32 3 1 PRO A 103 ? ? -76.38 44.96 4 1 HIS A 113 ? ? -119.54 65.73 5 1 SER A 126 ? ? -107.01 -124.61 6 1 ASP A 134 ? ? -118.85 -154.93 7 1 ASP A 153 ? ? -87.06 38.02 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 41 ? CD ? A LYS 44 CD 2 1 Y 1 A LYS 41 ? CE ? A LYS 44 CE 3 1 Y 1 A LYS 41 ? NZ ? A LYS 44 NZ 4 1 Y 1 A GLU 71 ? CD ? A GLU 74 CD 5 1 Y 1 A GLU 71 ? OE1 ? A GLU 74 OE1 6 1 Y 1 A GLU 71 ? OE2 ? A GLU 74 OE2 7 1 Y 1 A GLU 95 ? CG ? A GLU 98 CG 8 1 Y 1 A GLU 95 ? CD ? A GLU 98 CD 9 1 Y 1 A GLU 95 ? OE1 ? A GLU 98 OE1 10 1 Y 1 A GLU 95 ? OE2 ? A GLU 98 OE2 11 1 Y 1 A HIS 113 ? CG ? A HIS 116 CG 12 1 Y 1 A HIS 113 ? ND1 ? A HIS 116 ND1 13 1 Y 1 A HIS 113 ? CD2 ? A HIS 116 CD2 14 1 Y 1 A HIS 113 ? CE1 ? A HIS 116 CE1 15 1 Y 1 A HIS 113 ? NE2 ? A HIS 116 NE2 16 1 Y 1 A GLU 116 ? CG ? A GLU 119 CG 17 1 Y 1 A GLU 116 ? CD ? A GLU 119 CD 18 1 Y 1 A GLU 116 ? OE1 ? A GLU 119 OE1 19 1 Y 1 A GLU 116 ? OE2 ? A GLU 119 OE2 20 1 Y 1 A VAL 137 ? CG1 ? A VAL 140 CG1 21 1 Y 1 A VAL 137 ? CG2 ? A VAL 140 CG2 22 1 Y 1 A ARG 147 ? NH1 ? A ARG 150 NH1 23 1 Y 1 A ARG 147 ? NH2 ? A ARG 150 NH2 24 1 Y 1 A ASP 153 ? CG ? A ASP 156 CG 25 1 Y 1 A ASP 153 ? OD1 ? A ASP 156 OD1 26 1 Y 1 A ASP 153 ? OD2 ? A ASP 156 OD2 27 1 Y 1 A LYS 176 ? NZ ? A LYS 179 NZ 28 1 Y 1 A PHE 179 ? CD1 ? A PHE 182 CD1 29 1 Y 1 A PHE 179 ? CD2 ? A PHE 182 CD2 30 1 Y 1 A PHE 179 ? CE1 ? A PHE 182 CE1 31 1 Y 1 A PHE 179 ? CE2 ? A PHE 182 CE2 32 1 Y 1 A PHE 179 ? CZ ? A PHE 182 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A ASP 181 ? A ASP 184 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #