HEADER VIRAL PROTEIN 15-JAN-15 4S1X TITLE CRYSTAL STRUCTURE OF HA2-DEL-L2SEM, CENTRAL COILED-COIL FROM INFLUENZA TITLE 2 HEMAGGLUTININ HA2 WITHOUT HEPTAD REPEAT STUTTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRUNCATED HEMAGGLUTININ; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 4 ORGANISM_TAXID: 11309; SOURCE 5 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS MARBURG VIRUS, GP2 ECTODOMAIN, POST-FUSION CONFORMATION, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,C.D.HIGGINS,J.R.LAI,S.C.ALMO REVDAT 2 10-JUN-15 4S1X 1 JRNL REVDAT 1 01-APR-15 4S1X 0 JRNL AUTH V.N.MALASHKEVICH,C.D.HIGGINS,S.C.ALMO,J.R.LAI JRNL TITL A SWITCH FROM PARALLEL TO ANTIPARALLEL STRAND ORIENTATION IN JRNL TITL 2 A COILED-COIL X-RAY STRUCTURE VIA TWO CORE HYDROPHOBIC JRNL TITL 3 MUTATIONS. JRNL REF BIOPOLYMERS V. 104 178 2015 JRNL REFN ISSN 0006-3525 JRNL PMID 25753192 JRNL DOI 10.1002/BIP.22631 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.50000 REMARK 3 B22 (A**2) : -46.54000 REMARK 3 B33 (A**2) : 19.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 25.47000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1683 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2218 ; 1.147 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 4.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.447 ;25.534 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;17.983 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;24.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1251 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 768 ; 1.957 ; 5.454 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 940 ; 2.886 ;73.466 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 915 ; 3.316 ; 6.351 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 4 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.374 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, L REMARK 3 TWIN FRACTION : 0.141 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : L, -K, H REMARK 3 TWIN FRACTION : 0.098 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : -L, K, H REMARK 3 TWIN FRACTION : 0.388 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4696 11.6098 -12.2795 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0237 REMARK 3 T33: 0.0775 T12: -0.0031 REMARK 3 T13: -0.0101 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.6674 L22: 3.2122 REMARK 3 L33: 0.6829 L12: -1.4054 REMARK 3 L13: 0.5407 L23: -0.9485 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: 0.0328 S13: 0.0547 REMARK 3 S21: 0.1236 S22: -0.0277 S23: -0.1454 REMARK 3 S31: -0.0680 S32: 0.0425 S33: 0.0840 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7127 12.5235 -18.9204 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0296 REMARK 3 T33: 0.0369 T12: 0.0069 REMARK 3 T13: -0.0017 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0588 L22: 4.8590 REMARK 3 L33: 0.6551 L12: -0.1896 REMARK 3 L13: 0.1246 L23: -1.5590 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.0376 S13: -0.0069 REMARK 3 S21: 0.0327 S22: -0.0510 S23: -0.0006 REMARK 3 S31: -0.0002 S32: 0.0771 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 45 C 70 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8130 26.9384 -17.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.0741 REMARK 3 T33: 0.1057 T12: -0.0505 REMARK 3 T13: -0.0584 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.8114 L22: 3.6322 REMARK 3 L33: 0.0229 L12: 1.6901 REMARK 3 L13: 0.1214 L23: 0.2509 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.0300 S13: -0.0779 REMARK 3 S21: 0.0785 S22: -0.0230 S23: -0.2276 REMARK 3 S31: -0.0066 S32: 0.0093 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 83 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4364 36.4155 -2.4359 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0243 REMARK 3 T33: 0.0528 T12: 0.0020 REMARK 3 T13: 0.0341 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3397 L22: 3.3447 REMARK 3 L33: 0.2609 L12: -0.6664 REMARK 3 L13: -0.1841 L23: 0.8915 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 0.0557 S13: 0.0703 REMARK 3 S21: 0.0130 S22: -0.0747 S23: -0.0907 REMARK 3 S31: 0.0156 S32: -0.0388 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 43 E 101 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9455 37.1067 4.7547 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0347 REMARK 3 T33: 0.0411 T12: 0.0050 REMARK 3 T13: 0.0189 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.5953 L22: 5.4012 REMARK 3 L33: 0.0624 L12: -1.6679 REMARK 3 L13: -0.0674 L23: 0.3249 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.0448 S13: 0.0087 REMARK 3 S21: 0.0344 S22: -0.0720 S23: 0.0192 REMARK 3 S31: 0.0296 S32: -0.0199 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 45 F 70 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9083 51.5442 -5.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0495 REMARK 3 T33: 0.0996 T12: 0.0183 REMARK 3 T13: 0.0021 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.7452 L22: 1.8557 REMARK 3 L33: 0.1336 L12: 0.2666 REMARK 3 L13: -0.0461 L23: -0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.1152 S13: 0.0119 REMARK 3 S21: -0.0938 S22: 0.1173 S23: -0.0094 REMARK 3 S31: 0.0296 S32: -0.0444 S33: -0.0650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4S1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-15. REMARK 100 THE RCSB ID CODE IS RCSB088076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 5% 2-PROPANOL, 0.1 M REMARK 280 HEPES:NAOH, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.26150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER OR TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP B 42 REMARK 465 TRP C 42 REMARK 465 GLY C 43 REMARK 465 SER C 44 REMARK 465 SER C 71 REMARK 465 GLU C 72 REMARK 465 VAL C 73 REMARK 465 GLU C 74 REMARK 465 GLY C 75 REMARK 465 ARG C 76 REMARK 465 ILE C 77 REMARK 465 GLN C 78 REMARK 465 ASP C 79 REMARK 465 MSE C 80 REMARK 465 GLU C 81 REMARK 465 LYS C 82 REMARK 465 TYR C 83 REMARK 465 TRP E 42 REMARK 465 TRP F 42 REMARK 465 GLY F 43 REMARK 465 SER F 44 REMARK 465 SER F 71 REMARK 465 GLU F 72 REMARK 465 VAL F 73 REMARK 465 GLU F 74 REMARK 465 GLY F 75 REMARK 465 ARG F 76 REMARK 465 ILE F 77 REMARK 465 GLN F 78 REMARK 465 ASP F 79 REMARK 465 MSE F 80 REMARK 465 GLU F 81 REMARK 465 LYS F 82 REMARK 465 TYR F 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 58 C PHE A 63 N 0.242 REMARK 500 LYS B 58 C PHE B 63 N 0.157 REMARK 500 LYS D 58 C PHE D 63 N 0.244 REMARK 500 LYS E 58 C PHE E 63 N 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 58 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 67 -84.60 -56.86 REMARK 500 GLU F 69 21.19 -71.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OXM RELATED DB: PDB REMARK 900 RELATED ID: 4P67 RELATED DB: PDB DBREF 4S1X A 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 DBREF 4S1X B 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 DBREF 4S1X C 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 DBREF 4S1X D 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 DBREF 4S1X E 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 DBREF 4S1X F 45 83 UNP A8TXJ0 A8TXJ0_9ORTO 22 60 SEQADV 4S1X TRP A 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY A 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER A 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE A 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X A UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X A UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X A UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X A UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE A 80 UNP A8TXJ0 LEU 57 CONFLICT SEQADV 4S1X TRP B 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY B 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER B 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE B 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X B UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X B UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X B UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X B UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE B 80 UNP A8TXJ0 LEU 57 CONFLICT SEQADV 4S1X TRP C 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY C 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER C 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE C 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X C UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X C UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X C UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X C UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE C 80 UNP A8TXJ0 LEU 57 CONFLICT SEQADV 4S1X TRP D 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY D 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER D 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE D 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X D UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X D UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X D UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X D UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE D 80 UNP A8TXJ0 LEU 57 CONFLICT SEQADV 4S1X TRP E 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY E 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER E 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE E 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X E UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X E UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X E UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X E UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE E 80 UNP A8TXJ0 LEU 57 CONFLICT SEQADV 4S1X TRP F 42 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X GLY F 43 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X SER F 44 UNP A8TXJ0 EXPRESSION TAG SEQADV 4S1X MSE F 52 UNP A8TXJ0 LEU 29 CONFLICT SEQADV 4S1X F UNP A8TXJ0 GLU 34 DELETION SEQADV 4S1X F UNP A8TXJ0 LYS 35 DELETION SEQADV 4S1X F UNP A8TXJ0 THR 36 DELETION SEQADV 4S1X F UNP A8TXJ0 ASN 37 DELETION SEQADV 4S1X MSE F 80 UNP A8TXJ0 LEU 57 CONFLICT SEQRES 1 A 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 A 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 A 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR SEQRES 1 B 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 B 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 B 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR SEQRES 1 C 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 C 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 C 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR SEQRES 1 D 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 D 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 D 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR SEQRES 1 E 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 E 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 E 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR SEQRES 1 F 38 TRP GLY SER ILE ASP GLN ILE ASN GLY LYS MSE ASN ARG SEQRES 2 F 38 VAL ILE GLU LYS PHE HIS GLN ILE GLU LYS GLU PHE SER SEQRES 3 F 38 GLU VAL GLU GLY ARG ILE GLN ASP MSE GLU LYS TYR MODRES 4S1X MSE A 52 MET SELENOMETHIONINE MODRES 4S1X MSE A 80 MET SELENOMETHIONINE MODRES 4S1X MSE B 52 MET SELENOMETHIONINE MODRES 4S1X MSE B 80 MET SELENOMETHIONINE MODRES 4S1X MSE C 52 MET SELENOMETHIONINE MODRES 4S1X MSE D 52 MET SELENOMETHIONINE MODRES 4S1X MSE D 80 MET SELENOMETHIONINE MODRES 4S1X MSE E 52 MET SELENOMETHIONINE MODRES 4S1X MSE E 80 MET SELENOMETHIONINE MODRES 4S1X MSE F 52 MET SELENOMETHIONINE HET MSE A 52 8 HET MSE A 80 8 HET MSE B 52 8 HET MSE B 80 8 HET MSE C 52 8 HET MSE D 52 8 HET MSE D 80 8 HET MSE E 52 8 HET MSE E 80 8 HET MSE F 52 8 HET GOL E 101 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *54(H2 O) HELIX 1 1 TRP A 42 TYR A 83 1 38 HELIX 2 2 SER B 44 TYR B 83 1 36 HELIX 3 3 ASP C 46 PHE C 70 1 21 HELIX 4 4 GLY D 43 TYR D 83 1 37 HELIX 5 5 SER E 44 TYR E 83 1 36 HELIX 6 6 ASP F 46 GLU F 69 1 20 LINK C LYS A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ASN A 53 1555 1555 1.33 LINK C ASP A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N GLU A 81 1555 1555 1.34 LINK C LYS B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N ASN B 53 1555 1555 1.33 LINK C ASP B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N GLU B 81 1555 1555 1.33 LINK C LYS C 51 N MSE C 52 1555 1555 1.33 LINK C MSE C 52 N ASN C 53 1555 1555 1.33 LINK C LYS D 51 N MSE D 52 1555 1555 1.33 LINK C MSE D 52 N ASN D 53 1555 1555 1.34 LINK C ASP D 79 N MSE D 80 1555 1555 1.33 LINK C MSE D 80 N GLU D 81 1555 1555 1.34 LINK C LYS E 51 N MSE E 52 1555 1555 1.33 LINK C MSE E 52 N ASN E 53 1555 1555 1.33 LINK C ASP E 79 N MSE E 80 1555 1555 1.34 LINK C MSE E 80 N GLU E 81 1555 1555 1.33 LINK C LYS F 51 N MSE F 52 1555 1555 1.34 LINK C MSE F 52 N ASN F 53 1555 1555 1.33 SITE 1 AC1 3 GLU E 67 HOH E 204 HOH E 207 CRYST1 34.450 98.523 34.553 90.00 89.96 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029028 0.000000 -0.000021 0.00000 SCALE2 0.000000 0.010150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028941 0.00000