data_4S2H # _entry.id 4S2H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code RCSB RCSB088096 PDB 4S2H WWPDB D_1000088096 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4S2D . unspecified PDB 4S2F . unspecified PDB 4S2G . unspecified # _pdbx_database_status.entry_id 4S2H _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-01-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kovalevsky, A.' 1 'Wan, Q.' 2 'Langan, P.' 3 # _citation.id primary _citation.title ;Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 12384 _citation.page_last 12389 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26392527 _citation.pdbx_database_id_DOI 10.1073/pnas.1504986112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, Q.' 1 ? primary 'Parks, J.M.' 2 ? primary 'Hanson, B.L.' 3 ? primary 'Fisher, S.Z.' 4 ? primary 'Ostermann, A.' 5 ? primary 'Schrader, T.E.' 6 ? primary 'Graham, D.E.' 7 ? primary 'Coates, L.' 8 ? primary 'Langan, P.' 9 ? primary 'Kovalevsky, A.' 10 ? # _cell.entry_id 4S2H _cell.length_a 49.613 _cell.length_b 60.033 _cell.length_c 70.553 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4S2H _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Endo-1,4-beta-xylanase 2' 20838.436 1 3.2.1.8 ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 1 ? ? ? ? 3 water nat water 18.015 170 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Xylanase 2, 1,4-beta-D-xylan xylanohydrolase 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(PCA)TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSV YGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHF NAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS ; _entity_poly.pdbx_seq_one_letter_code_can ;QTIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWS RNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWA QQGLTLGTMDYQIVAVEGYFSSGSASITVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 THR n 1 3 ILE n 1 4 GLN n 1 5 PRO n 1 6 GLY n 1 7 THR n 1 8 GLY n 1 9 TYR n 1 10 ASN n 1 11 ASN n 1 12 GLY n 1 13 TYR n 1 14 PHE n 1 15 TYR n 1 16 SER n 1 17 TYR n 1 18 TRP n 1 19 ASN n 1 20 ASP n 1 21 GLY n 1 22 HIS n 1 23 GLY n 1 24 GLY n 1 25 VAL n 1 26 THR n 1 27 TYR n 1 28 THR n 1 29 ASN n 1 30 GLY n 1 31 PRO n 1 32 GLY n 1 33 GLY n 1 34 GLN n 1 35 PHE n 1 36 SER n 1 37 VAL n 1 38 ASN n 1 39 TRP n 1 40 SER n 1 41 ASN n 1 42 SER n 1 43 GLY n 1 44 ASN n 1 45 PHE n 1 46 VAL n 1 47 GLY n 1 48 GLY n 1 49 LYS n 1 50 GLY n 1 51 TRP n 1 52 GLN n 1 53 PRO n 1 54 GLY n 1 55 THR n 1 56 LYS n 1 57 ASN n 1 58 LYS n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 TYR n 1 67 ASN n 1 68 PRO n 1 69 ASN n 1 70 GLY n 1 71 ASN n 1 72 SER n 1 73 TYR n 1 74 LEU n 1 75 SER n 1 76 VAL n 1 77 TYR n 1 78 GLY n 1 79 TRP n 1 80 SER n 1 81 ARG n 1 82 ASN n 1 83 PRO n 1 84 LEU n 1 85 ILE n 1 86 GLU n 1 87 TYR n 1 88 TYR n 1 89 ILE n 1 90 VAL n 1 91 GLU n 1 92 ASN n 1 93 PHE n 1 94 GLY n 1 95 THR n 1 96 TYR n 1 97 ASN n 1 98 PRO n 1 99 SER n 1 100 THR n 1 101 GLY n 1 102 ALA n 1 103 THR n 1 104 LYS n 1 105 LEU n 1 106 GLY n 1 107 GLU n 1 108 VAL n 1 109 THR n 1 110 SER n 1 111 ASP n 1 112 GLY n 1 113 SER n 1 114 VAL n 1 115 TYR n 1 116 ASP n 1 117 ILE n 1 118 TYR n 1 119 ARG n 1 120 THR n 1 121 GLN n 1 122 ARG n 1 123 VAL n 1 124 ASN n 1 125 GLN n 1 126 PRO n 1 127 SER n 1 128 ILE n 1 129 ILE n 1 130 GLY n 1 131 THR n 1 132 ALA n 1 133 THR n 1 134 PHE n 1 135 TYR n 1 136 GLN n 1 137 TYR n 1 138 TRP n 1 139 SER n 1 140 VAL n 1 141 ARG n 1 142 ARG n 1 143 ASN n 1 144 HIS n 1 145 ARG n 1 146 SER n 1 147 SER n 1 148 GLY n 1 149 SER n 1 150 VAL n 1 151 ASN n 1 152 THR n 1 153 ALA n 1 154 ASN n 1 155 HIS n 1 156 PHE n 1 157 ASN n 1 158 ALA n 1 159 TRP n 1 160 ALA n 1 161 GLN n 1 162 GLN n 1 163 GLY n 1 164 LEU n 1 165 THR n 1 166 LEU n 1 167 GLY n 1 168 THR n 1 169 MET n 1 170 ASP n 1 171 TYR n 1 172 GLN n 1 173 ILE n 1 174 VAL n 1 175 ALA n 1 176 VAL n 1 177 GLU n 1 178 GLY n 1 179 TYR n 1 180 PHE n 1 181 SER n 1 182 SER n 1 183 GLY n 1 184 SER n 1 185 ALA n 1 186 SER n 1 187 ILE n 1 188 THR n 1 189 VAL n 1 190 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Trichoderma reesei' _entity_src_nat.pdbx_ncbi_taxonomy_id 51453 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code XYN2_HYPJE _struct_ref.pdbx_db_accession P36217 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QTIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWS RNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWA QQGLTLGTMDYQIVAVEGYFSSGSASITVS ; _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4S2H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36217 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _exptl.entry_id _exptl.method _exptl.crystals_number 4S2H 'X-RAY DIFFRACTION' 1 4S2H 'NEUTRON DIFFRACTION' 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 275.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG8000, 0.1M TRIS, 0.2M NaI, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 275.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 291 ? 1 2 291 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IV++' 2010-06-25 'OSMIC VARIMAX' 2 'AREA DETECTOR' '3He PSD' 2010-08-09 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' none M x-ray 2 1 ? none M neutron # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.54 1.0 2 0.7 1.0 3 7.0 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 'ROTATING ANODE' 'RIGAKU MICROMAX-007 HF' ? 1.54 ? ? 2 'NUCLEAR REACTOR' OTHER ? 0.7-7.0 ? ? # loop_ _reflns.pdbx_diffrn_id _reflns.pdbx_ordinal _reflns.entry_id _reflns.d_resolution_high _reflns.d_resolution_low _reflns.number_all _reflns.observed_criterion_F_max _reflns.observed_criterion_F_min _reflns.observed_criterion_sigma_F _reflns.observed_criterion_sigma_I _reflns.number_obs _reflns.percent_possible_obs _reflns.pdbx_Rmerge_I_obs _reflns.pdbx_Rsym_value _reflns.pdbx_netI_over_sigmaI _reflns.B_iso_Wilson_estimate _reflns.pdbx_redundancy _reflns.R_free_details _reflns.pdbx_chi_squared _reflns.pdbx_scaling_rejects _reflns.limit_h_max _reflns.limit_h_min _reflns.limit_k_max _reflns.limit_k_min _reflns.limit_l_max _reflns.limit_l_min 1 1 4S2H 1.55 33.62 ? ? ? ? ? 30268 96.8 0.069 ? 9.8 ? 4.2 ? ? ? ? ? ? ? ? ? 2 2 4S2H 1.70 22.86 ? ? ? ? 1.5 20012 85.3 0.237 ? 5.1 ? 3.3 ? ? ? ? ? ? ? ? ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.55 1.61 93.2 0.449 ? 1.9 3.98 ? ? ? ? ? ? 2 2 1.70 1.79 70.7 0.364 ? 1.7 2.0 ? ? ? ? ? ? # loop_ _refine.pdbx_refine_id _refine.entry_id _refine.ls_number_reflns_all _refine.ls_number_reflns_obs _refine.ls_number_reflns_R_work _refine.ls_percent_reflns_obs _refine.ls_d_res_high _refine.ls_d_res_low _refine.B_iso_min _refine.B_iso_max _refine.B_iso_mean _refine.solvent_model_param_bsol _refine.solvent_model_param_ksol _refine.solvent_model_details _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free _refine.ls_R_factor_R_free_error _refine.ls_number_reflns_R_free _refine.ls_percent_reflns_R_free _refine.pdbx_ls_cross_valid_method _refine.pdbx_stereochemistry_target_values _refine.pdbx_method_to_determine_struct _refine.pdbx_R_Free_selection_details _refine.ls_R_factor_all _refine.ls_R_factor_obs _refine.pdbx_ls_sigma_F _refine.pdbx_ls_sigma_I _refine.ls_redundancy_reflns_obs _refine.pdbx_data_cutoff_high_absF _refine.pdbx_data_cutoff_low_absF _refine.ls_number_parameters _refine.ls_number_restraints _refine.ls_R_factor_R_free_error_details _refine.pdbx_starting_model _refine.pdbx_isotropic_thermal_model _refine.aniso_B[1][1] _refine.aniso_B[1][2] _refine.aniso_B[1][3] _refine.aniso_B[2][2] _refine.aniso_B[2][3] _refine.aniso_B[3][3] _refine.pdbx_stereochem_target_val_spec_case _refine.occupancy_max _refine.occupancy_min _refine.overall_SU_B _refine.overall_SU_ML _refine.pdbx_overall_ESU_R _refine.pdbx_overall_ESU_R_Free _refine.pdbx_data_cutoff_high_rms_absF _refine.details _refine.pdbx_overall_phase_error _refine.correlation_coeff_Fo_to_Fc _refine.correlation_coeff_Fo_to_Fc_free _refine.pdbx_solvent_vdw_probe_radii _refine.pdbx_solvent_ion_probe_radii _refine.pdbx_solvent_shrinkage_radii _refine.overall_SU_R_Cruickshank_DPI _refine.overall_SU_R_free _refine.ls_wR_factor_R_free _refine.ls_wR_factor_R_work _refine.overall_FOM_free_R_set _refine.overall_FOM_work_R_set _refine.pdbx_diffrn_id _refine.pdbx_TLS_residual_ADP_flag _refine.pdbx_overall_SU_R_free_Cruickshank_DPI _refine.pdbx_overall_SU_R_Blow_DPI _refine.pdbx_overall_SU_R_free_Blow_DPI 'X-RAY DIFFRACTION' 4S2H 28453 25612 24349 90.0 1.60 19.25 13.09 81.07 26.40 44.6362 0.259837 'CNS BULK SOLVENT MODEL USED' 0.199 0.210 0.006 1263 4.9 'FREE R-VALUE' 'JOINT X-RAY/NEUTRON ML' 'MOLECULAR REPLACEMENT' RANDOM ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 ? ? ? ? 'NEUTRON DIFFRACTION' 4S2H 23810 17268 16445 72.5 1.70 19.25 13.09 81.07 26.40 47.7847 0.602412 'CNS BULK SOLVENT MODEL USED' 0.261 0.268 0.009 823 4.8 'FREE R-VALUE' 'JOINT X-RAY/NEUTRON ML' 'MOLECULAR REPLACEMENT' RANDOM ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 ? ? ? ? # loop_ _refine_analyze.pdbx_refine_id _refine_analyze.entry_id _refine_analyze.Luzzati_d_res_low_obs _refine_analyze.pdbx_Luzzati_d_res_high_obs _refine_analyze.Luzzati_coordinate_error_obs _refine_analyze.Luzzati_sigma_a_obs _refine_analyze.Luzzati_coordinate_error_free _refine_analyze.Luzzati_sigma_a_free _refine_analyze.Luzzati_d_res_low_free _refine_analyze.number_disordered_residues _refine_analyze.occupancy_sum_non_hydrogen _refine_analyze.occupancy_sum_hydrogen 'X-RAY DIFFRACTION' 4S2H 5.00 1.60 0.19 0.18 0.19 0.22 ? ? ? ? 'NEUTRON DIFFRACTION' 4S2H 5.00 1.70 0.31 0.65 0.31 0.61 ? ? ? ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1480 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 1651 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 19.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 . 'X-RAY DIFFRACTION' ? ? ? x_angle_deg 1.2 . 'X-RAY DIFFRACTION' ? ? ? x_dihedral_angle_d 16.8 . 'X-RAY DIFFRACTION' ? ? ? x_improper_angle_d 1.05 . 'X-RAY DIFFRACTION' ? ? ? x_bond_d 0.011 . 'NEUTRON DIFFRACTION' ? ? ? x_angle_deg 1.2 . 'NEUTRON DIFFRACTION' ? ? ? x_dihedral_angle_d 16.8 . 'NEUTRON DIFFRACTION' ? ? ? x_improper_angle_d 1.05 . 'NEUTRON DIFFRACTION' ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all 1.60 1.67 3489 2602 2475 74.6 0.316 0.377 0.033 127 4.9 8 'X-RAY DIFFRACTION' . . 1.67 1.76 3526 2855 2716 80.9 0.290 0.326 0.028 139 4.9 8 'X-RAY DIFFRACTION' . . 1.76 1.87 3514 3005 2848 85.5 0.250 0.214 0.017 157 5.2 8 'X-RAY DIFFRACTION' . . 1.87 2.02 3532 3199 3036 90.6 0.218 0.238 0.019 163 5.1 8 'X-RAY DIFFRACTION' . . 2.02 2.22 3527 3325 3148 94.2 0.209 0.196 0.015 177 5.3 8 'X-RAY DIFFRACTION' . . 2.22 2.54 3550 3426 3265 96.5 0.198 0.193 0.015 161 4.7 8 'X-RAY DIFFRACTION' . . 2.54 3.20 3599 3511 3353 97.6 0.190 0.223 0.018 158 4.5 8 'X-RAY DIFFRACTION' . . 3.20 19.25 3746 3689 3508 98.5 0.176 0.189 0.014 181 4.9 8 'X-RAY DIFFRACTION' . . 1.70 1.78 2928 1433 1365 48.9 0.432 0.434 0.053 68 4.7 8 'NEUTRON DIFFRACTION' . . 1.78 1.87 2937 1592 1506 54.2 0.407 0.374 0.040 86 5.4 8 'NEUTRON DIFFRACTION' . . 1.87 1.99 2938 1760 1679 59.9 0.373 0.392 0.044 81 4.6 8 'NEUTRON DIFFRACTION' . . 1.99 2.14 2958 1990 1885 67.3 0.350 0.346 0.034 105 5.3 8 'NEUTRON DIFFRACTION' . . 2.14 2.36 2942 2218 2113 75.4 0.348 0.359 0.035 105 4.7 8 'NEUTRON DIFFRACTION' . . 2.36 2.70 2987 2523 2412 84.5 0.278 0.293 0.028 111 4.4 8 'NEUTRON DIFFRACTION' . . 2.70 3.39 3008 2770 2642 92.1 0.211 0.227 0.020 128 4.6 8 'NEUTRON DIFFRACTION' . . 3.39 19.25 3137 2982 2843 95.1 0.172 0.175 0.015 139 4.7 8 'NEUTRON DIFFRACTION' . . # _struct.entry_id 4S2H _struct.title 'Joint X-ray/neutron structure of Trichoderma reesei xylanase II at pH 8.5' _struct.pdbx_descriptor 'Endo-1,4-beta-xylanase 2 (E.C.3.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4S2H _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'glycoside hydrolase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 152 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 162 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 152 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 162 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id PCA _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id THR _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PCA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id THR _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.331 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 52 A . ? GLN 52 A PRO 53 A ? PRO 53 A 1 2.33 2 ASN 82 A . ? ASN 82 A PRO 83 A ? PRO 83 A 1 0.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 2 ? ILE A 3 ? THR A 2 ILE A 3 A 2 VAL A 25 ? ASN A 29 ? VAL A 25 ASN A 29 A 3 GLN A 34 ? TRP A 39 ? GLN A 34 TRP A 39 A 4 SER A 182 ? SER A 190 ? SER A 182 SER A 190 A 5 VAL A 59 ? ASN A 69 ? VAL A 59 ASN A 69 A 6 GLY A 148 ? ASN A 151 ? GLY A 148 ASN A 151 B 1 GLY A 6 ? ASN A 10 ? GLY A 6 ASN A 10 B 2 TYR A 13 ? ASN A 19 ? TYR A 13 ASN A 19 B 3 ASN A 44 ? TRP A 51 ? ASN A 44 TRP A 51 B 4 THR A 168 ? TYR A 179 ? THR A 168 TYR A 179 B 5 SER A 72 ? ARG A 81 ? SER A 72 ARG A 81 B 6 ILE A 85 ? PHE A 93 ? ILE A 85 PHE A 93 B 7 ALA A 132 ? ARG A 141 ? ALA A 132 ARG A 141 B 8 SER A 113 ? GLN A 125 ? SER A 113 GLN A 125 B 9 THR A 103 ? SER A 110 ? THR A 103 SER A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O TYR A 27 ? O TYR A 27 A 2 3 N THR A 28 ? N THR A 28 O SER A 36 ? O SER A 36 A 3 4 N TRP A 39 ? N TRP A 39 O GLY A 183 ? O GLY A 183 A 4 5 O SER A 182 ? O SER A 182 N ASN A 69 ? N ASN A 69 A 5 6 N ILE A 60 ? N ILE A 60 O VAL A 150 ? O VAL A 150 B 1 2 N ASN A 10 ? N ASN A 10 O TYR A 13 ? O TYR A 13 B 2 3 N PHE A 14 ? N PHE A 14 O GLY A 50 ? O GLY A 50 B 3 4 N TRP A 51 ? N TRP A 51 O GLN A 172 ? O GLN A 172 B 4 5 O ILE A 173 ? O ILE A 173 N TYR A 77 ? N TYR A 77 B 5 6 N GLY A 78 ? N GLY A 78 O TYR A 87 ? O TYR A 87 B 6 7 N VAL A 90 ? N VAL A 90 O ARG A 141 ? O ARG A 141 B 7 8 O PHE A 134 ? O PHE A 134 N ARG A 122 ? N ARG A 122 B 8 9 O ILE A 117 ? O ILE A 117 N LEU A 105 ? N LEU A 105 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE IOD A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASN A 82 ? ASN A 82 . ? 2_565 ? 2 AC1 2 SER A 146 ? SER A 146 . ? 1_555 ? # _atom_sites.entry_id 4S2H _atom_sites.fract_transf_matrix[1][1] 0.020156 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016658 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014174 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C D H I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 TRP 138 138 138 TRP TRP A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 GLN 161 161 161 GLN GLN A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 MET 169 169 169 MET MET A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 SER 190 190 190 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 201 201 IOD IOD A . C 3 DOD 1 1001 1001 DOD DOD A . C 3 DOD 2 1002 1002 DOD DOD A . C 3 DOD 3 1003 1003 DOD DOD A . C 3 DOD 4 1004 1004 DOD DOD A . C 3 DOD 5 1005 1005 DOD DOD A . C 3 DOD 6 1006 1006 DOD DOD A . C 3 DOD 7 1007 1007 DOD DOD A . C 3 DOD 8 1008 1008 DOD DOD A . C 3 DOD 9 1009 1009 DOD DOD A . C 3 DOD 10 1010 1010 DOD DOD A . C 3 DOD 11 1011 1011 DOD DOD A . C 3 DOD 12 1012 1012 DOD DOD A . C 3 DOD 13 1013 1013 DOD DOD A . C 3 DOD 14 1014 1014 DOD DOD A . C 3 DOD 15 1015 1015 DOD DOD A . C 3 DOD 16 1016 1016 DOD DOD A . C 3 DOD 17 1017 1017 DOD DOD A . C 3 DOD 18 1018 1018 DOD DOD A . C 3 DOD 19 1019 1019 DOD DOD A . C 3 DOD 20 1020 1020 DOD DOD A . C 3 DOD 21 1021 1021 DOD DOD A . C 3 DOD 22 1022 1022 DOD DOD A . C 3 DOD 23 1023 1023 DOD DOD A . C 3 DOD 24 1024 1024 DOD DOD A . C 3 DOD 25 1025 1025 DOD DOD A . C 3 DOD 26 1026 1026 DOD DOD A . C 3 DOD 27 1027 1027 DOD DOD A . C 3 DOD 28 1028 1028 DOD DOD A . C 3 DOD 29 1029 1029 DOD DOD A . C 3 DOD 30 1030 1030 DOD DOD A . C 3 DOD 31 1031 1031 DOD DOD A . C 3 DOD 32 1032 1032 DOD DOD A . C 3 DOD 33 1033 1033 DOD DOD A . C 3 DOD 34 1034 1034 DOD DOD A . C 3 DOD 35 1035 1035 DOD DOD A . C 3 DOD 36 1036 1036 DOD DOD A . C 3 DOD 37 1037 1037 DOD DOD A . C 3 DOD 38 1038 1038 DOD DOD A . C 3 DOD 39 1039 1039 DOD DOD A . C 3 DOD 40 1040 1040 DOD DOD A . C 3 DOD 41 1041 1041 DOD DOD A . C 3 DOD 42 1042 1042 DOD DOD A . C 3 DOD 43 1043 1043 DOD DOD A . C 3 DOD 44 1044 1044 DOD DOD A . C 3 DOD 45 1045 1045 DOD DOD A . C 3 DOD 46 1046 1046 DOD DOD A . C 3 DOD 47 1047 1047 DOD DOD A . C 3 DOD 48 1048 1048 DOD DOD A . C 3 DOD 49 1049 1049 DOD DOD A . C 3 DOD 50 1050 1050 DOD DOD A . C 3 DOD 51 1051 1051 DOD DOD A . C 3 DOD 52 1052 1052 DOD DOD A . C 3 DOD 53 1053 1053 DOD DOD A . C 3 DOD 54 1054 1054 DOD DOD A . C 3 DOD 55 1055 1055 DOD DOD A . C 3 DOD 56 1056 1056 DOD DOD A . C 3 DOD 57 1057 1057 DOD DOD A . C 3 DOD 58 1058 1058 DOD DOD A . C 3 DOD 59 1059 1059 DOD DOD A . C 3 DOD 60 1060 1060 DOD DOD A . C 3 DOD 61 1061 1061 DOD DOD A . C 3 DOD 62 1062 1062 DOD DOD A . C 3 DOD 63 1063 1063 DOD DOD A . C 3 DOD 64 1064 1064 DOD DOD A . C 3 DOD 65 1065 1065 DOD DOD A . C 3 DOD 66 1066 1066 DOD DOD A . C 3 DOD 67 1067 1067 DOD DOD A . C 3 DOD 68 1068 1068 DOD DOD A . C 3 DOD 69 1069 1069 DOD DOD A . C 3 DOD 70 1070 1070 DOD DOD A . C 3 DOD 71 1071 1071 DOD DOD A . C 3 DOD 72 1072 1072 DOD DOD A . C 3 DOD 73 1073 1073 DOD DOD A . C 3 DOD 74 1074 1074 DOD DOD A . C 3 DOD 75 1075 1075 DOD DOD A . C 3 DOD 76 1076 1076 DOD DOD A . C 3 DOD 77 1077 1077 DOD DOD A . C 3 DOD 78 1078 1078 DOD DOD A . C 3 DOD 79 1079 1079 DOD DOD A . C 3 DOD 80 1080 1080 DOD DOD A . C 3 DOD 81 1081 1081 DOD DOD A . C 3 DOD 82 1082 1082 DOD DOD A . C 3 DOD 83 1083 1083 DOD DOD A . C 3 DOD 84 1084 1084 DOD DOD A . C 3 DOD 85 1085 1085 DOD DOD A . C 3 DOD 86 1086 1086 DOD DOD A . C 3 DOD 87 1087 1087 DOD DOD A . C 3 DOD 88 1088 1088 DOD DOD A . C 3 DOD 89 1089 1089 DOD DOD A . C 3 DOD 90 1090 1090 DOD DOD A . C 3 DOD 91 1091 1091 DOD DOD A . C 3 DOD 92 1092 1092 DOD DOD A . C 3 DOD 93 1093 1093 DOD DOD A . C 3 DOD 94 1094 1094 DOD DOD A . C 3 DOD 95 1095 1095 DOD DOD A . C 3 DOD 96 1096 1096 DOD DOD A . C 3 DOD 97 1097 1097 DOD DOD A . C 3 DOD 98 1098 1098 DOD DOD A . C 3 DOD 99 1099 1099 DOD DOD A . C 3 DOD 100 1100 1100 DOD DOD A . C 3 DOD 101 1101 1101 DOD DOD A . C 3 DOD 102 1102 1102 DOD DOD A . C 3 DOD 103 1103 1103 DOD DOD A . C 3 DOD 104 1104 1104 DOD DOD A . C 3 DOD 105 1105 1105 DOD DOD A . C 3 DOD 106 1106 1106 DOD DOD A . C 3 DOD 107 1107 1107 DOD DOD A . C 3 DOD 108 1108 1108 DOD DOD A . C 3 DOD 109 1109 1109 DOD DOD A . C 3 DOD 110 1110 1110 DOD DOD A . C 3 DOD 111 1111 1111 DOD DOD A . C 3 DOD 112 1112 1112 DOD DOD A . C 3 DOD 113 1113 1113 DOD DOD A . C 3 DOD 114 1114 1114 DOD DOD A . C 3 DOD 115 1115 1115 DOD DOD A . C 3 DOD 116 1116 1116 DOD DOD A . C 3 DOD 117 1117 1117 DOD DOD A . C 3 DOD 118 1118 1118 DOD DOD A . C 3 DOD 119 1119 1119 DOD DOD A . C 3 DOD 120 1120 1120 DOD DOD A . C 3 DOD 121 1121 1121 DOD DOD A . C 3 DOD 122 1122 1122 DOD DOD A . C 3 DOD 123 1123 1123 DOD DOD A . C 3 DOD 124 1124 1124 DOD DOD A . C 3 DOD 125 1125 1125 DOD DOD A . C 3 DOD 126 1126 1126 DOD DOD A . C 3 DOD 127 1127 1127 DOD DOD A . C 3 DOD 128 1128 1128 DOD DOD A . C 3 DOD 129 1129 1129 DOD DOD A . C 3 DOD 130 1130 1130 DOD DOD A . C 3 DOD 131 1131 1131 DOD DOD A . C 3 DOD 132 1132 1132 DOD DOD A . C 3 DOD 133 1133 1133 DOD DOD A . C 3 DOD 134 1134 1134 DOD DOD A . C 3 DOD 135 1135 1135 DOD DOD A . C 3 DOD 136 1136 1136 DOD DOD A . C 3 DOD 137 1137 1137 DOD DOD A . C 3 DOD 138 1138 1138 DOD DOD A . C 3 DOD 139 1139 1139 DOD DOD A . C 3 DOD 140 1140 1140 DOD DOD A . C 3 DOD 141 1141 1141 DOD DOD A . C 3 DOD 142 1142 1142 DOD DOD A . C 3 DOD 143 1143 1143 DOD DOD A . C 3 DOD 144 1144 1144 DOD DOD A . C 3 DOD 145 1145 1145 DOD DOD A . C 3 DOD 146 1146 1146 DOD DOD A . C 3 DOD 147 1147 1147 DOD DOD A . C 3 DOD 148 1148 1148 DOD DOD A . C 3 DOD 149 1149 1149 DOD DOD A . C 3 DOD 150 1150 1150 DOD DOD A . C 3 DOD 151 1151 1151 DOD DOD A . C 3 DOD 152 1152 1152 DOD DOD A . C 3 DOD 153 1153 1153 DOD DOD A . C 3 DOD 154 1154 1154 DOD DOD A . C 3 DOD 155 1155 1155 DOD DOD A . C 3 DOD 156 1156 1156 DOD DOD A . C 3 DOD 157 1157 1157 DOD DOD A . C 3 DOD 158 1158 1158 DOD DOD A . C 3 DOD 159 1159 1159 DOD DOD A . C 3 DOD 160 1160 1160 DOD DOD A . C 3 DOD 161 1161 1161 DOD DOD A . C 3 DOD 162 1162 1162 DOD DOD A . C 3 DOD 163 1163 1163 DOD DOD A . C 3 DOD 164 1164 1164 DOD DOD A . C 3 DOD 165 1165 1165 DOD DOD A . C 3 DOD 166 1166 1166 DOD DOD A . C 3 DOD 167 1167 1167 DOD DOD A . C 3 DOD 168 1168 1168 DOD DOD A . C 3 DOD 169 1169 1169 DOD DOD A . C 3 DOD 170 1170 1170 DOD DOD A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-23 2 'Structure model' 1 1 2015-10-14 3 'Structure model' 1 2 2015-10-21 4 'Structure model' 1 3 2015-12-02 5 'Structure model' 1 4 2018-04-25 6 'Structure model' 2 0 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 6 'Structure model' entity_poly 3 6 'Structure model' pdbx_struct_mod_residue 4 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.source' 2 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 6 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 4 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.location _software.classification _software.language _software.pdbx_ordinal ? nCNS 1.0.0 2008 package 'Marat Mustyakimov' marat@lanl.gov http://mnc.lanl.gov refinement Fortran 1 ? HKL-2000 'FOR X-RAY' ? ? ? ? ? 'data collection' ? 2 ? d*TREK 'FOR NEUTRON' ? ? ? ? ? 'data scaling' ? 3 ? HKL-2000 'FOR X-RAY' ? ? ? ? ? 'data reduction' ? 4 ? d*TREK 'FOR NEUTRON' ? ? ? ? ? 'data reduction' ? 5 ? LAUENORM . ? ? ? ? ? 'data scaling' ? 6 ? CNS . ? ? ? ? ? phasing ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 D2 A DOD 1017 ? ? O A DOD 1091 ? ? 1.46 2 1 O A DOD 1088 ? ? D2 A DOD 1092 ? ? 1.54 3 1 DH A TYR 88 ? A OE1 A GLU 177 ? ? 1.56 4 1 HH A TYR 88 ? B OE1 A GLU 177 ? ? 1.56 5 1 O A DOD 1027 ? ? D1 A DOD 1113 ? ? 1.58 6 1 OD2 A ASP 111 ? ? D1 A DOD 1005 ? ? 1.59 7 1 DH A TYR 87 ? A O A DOD 1007 ? ? 1.59 8 1 HH A TYR 87 ? B O A DOD 1007 ? ? 1.59 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 170 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -108.15 _pdbx_validate_torsion.psi -147.45 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water DOD # loop_ _refine_funct_minimized.pdbx_refine_id _refine_funct_minimized.type 'X-RAY DIFFRACTION' 'JOINT X-RAY/NEUTRON ML' 'NEUTRON DIFFRACTION' 'JOINT X-RAY/NEUTRON ML' #