HEADER HYDROLASE/ANTIBIOTIC 20-JAN-15 4S2J TITLE OXA-48 IN COMPLEX WITH AVIBACTAM AT PH 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, FP68_27275, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.KING,N.C.J.STRYNADKA REVDAT 4 22-NOV-17 4S2J 1 REMARK REVDAT 3 28-SEP-16 4S2J 1 JRNL REVDAT 2 03-JUN-15 4S2J 1 HETSYN REVDAT 1 25-FEB-15 4S2J 0 JRNL AUTH D.T.KING,A.M.KING,S.M.LAL,G.D.WRIGHT,N.C.STRYNADKA JRNL TITL MOLECULAR MECHANISM OF AVIBACTAM-MEDIATED BETA-LACTAMASE JRNL TITL 2 INHIBITION. JRNL REF ACS INFECT DIS V. 1 175 2015 JRNL REFN ESSN 2373-8227 JRNL PMID 27622530 JRNL DOI 10.1021/ACSINFECDIS.5B00007 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 32724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : 2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 9.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8174 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7690 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11064 ; 1.489 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17609 ; 1.531 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 964 ; 5.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 417 ;37.281 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1421 ;16.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1163 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9306 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2052 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3877 ; 2.487 ; 3.202 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3877 ; 2.487 ; 3.202 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4834 ; 3.889 ; 4.795 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4835 ; 3.889 ; 4.795 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4297 ; 3.093 ; 3.528 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4298 ; 3.093 ; 3.528 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6231 ; 5.016 ; 5.164 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9498 ; 7.023 ;25.869 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9464 ; 7.019 ;25.890 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 25 265 B 25 265 15326 0.10 0.05 REMARK 3 2 A 25 264 C 25 264 15266 0.09 0.05 REMARK 3 3 A 25 264 D 25 264 15237 0.10 0.05 REMARK 3 4 B 25 264 C 25 264 15386 0.09 0.05 REMARK 3 5 B 25 264 D 25 264 15210 0.10 0.05 REMARK 3 6 C 24 265 D 24 265 15516 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4S2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000088098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 65.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2SO4, 0.1 M MES PH 6.5, 10 REMARK 280 MM COCL2, 2MM AVIBACTAM, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN BEHAVES AS A DIMER IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ILE B 15 REMARK 465 ILE B 16 REMARK 465 GLY B 17 REMARK 465 MET B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLU B 24 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 ALA C 5 REMARK 465 LEU C 6 REMARK 465 SER C 7 REMARK 465 ALA C 8 REMARK 465 VAL C 9 REMARK 465 PHE C 10 REMARK 465 LEU C 11 REMARK 465 VAL C 12 REMARK 465 ALA C 13 REMARK 465 SER C 14 REMARK 465 ILE C 15 REMARK 465 ILE C 16 REMARK 465 GLY C 17 REMARK 465 MET C 18 REMARK 465 PRO C 19 REMARK 465 ALA C 20 REMARK 465 VAL C 21 REMARK 465 ALA C 22 REMARK 465 LYS C 23 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 VAL D 3 REMARK 465 LEU D 4 REMARK 465 ALA D 5 REMARK 465 LEU D 6 REMARK 465 SER D 7 REMARK 465 ALA D 8 REMARK 465 VAL D 9 REMARK 465 PHE D 10 REMARK 465 LEU D 11 REMARK 465 VAL D 12 REMARK 465 ALA D 13 REMARK 465 SER D 14 REMARK 465 ILE D 15 REMARK 465 ILE D 16 REMARK 465 GLY D 17 REMARK 465 MET D 18 REMARK 465 PRO D 19 REMARK 465 ALA D 20 REMARK 465 VAL D 21 REMARK 465 ALA D 22 REMARK 465 LYS D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 GLU D 24 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 70 OAC NXL C 301 1.98 REMARK 500 OG SER B 70 OAC NXL B 301 2.07 REMARK 500 OG SER A 70 OAC NXL A 301 2.08 REMARK 500 OG SER D 70 OAC NXL D 301 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -130.58 52.98 REMARK 500 SER A 155 7.61 -153.47 REMARK 500 ASP A 159 28.74 -156.40 REMARK 500 MET A 241 76.64 -150.96 REMARK 500 ALA B 69 -131.15 49.56 REMARK 500 ASN B 106 56.99 -93.77 REMARK 500 SER B 155 9.83 -154.81 REMARK 500 ASP B 159 26.06 -140.71 REMARK 500 ALA C 69 -132.81 49.34 REMARK 500 ASN C 106 55.74 -94.27 REMARK 500 SER C 155 9.52 -154.27 REMARK 500 ASP C 159 26.01 -142.65 REMARK 500 ALA D 69 -133.60 48.52 REMARK 500 ASN D 106 57.60 -93.57 REMARK 500 SER D 155 7.89 -153.47 REMARK 500 ASP D 159 23.29 -140.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL D 301 DBREF 4S2J A 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2J B 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2J C 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2J D 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 SEQRES 1 A 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 A 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 A 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 A 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 A 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 A 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 A 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 A 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 A 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 A 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 A 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 A 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 A 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 A 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 A 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 A 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 A 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 A 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 A 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 A 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 A 265 GLU LYS ILE ILE PRO SEQRES 1 B 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 B 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 B 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 B 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 B 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 B 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 B 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 B 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 B 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 B 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 B 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 B 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 B 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 B 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 B 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 B 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 B 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 B 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 B 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 B 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 B 265 GLU LYS ILE ILE PRO SEQRES 1 C 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 C 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 C 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 C 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 C 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 C 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 C 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 C 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 C 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 C 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 C 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 C 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 C 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 C 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 C 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 C 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 C 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 C 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 C 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 C 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 C 265 GLU LYS ILE ILE PRO SEQRES 1 D 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 D 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 D 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 D 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 D 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 D 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 D 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 D 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 D 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 D 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 D 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 D 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 D 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 D 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 D 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 D 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 D 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 D 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 D 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 D 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 D 265 GLU LYS ILE ILE PRO HET NXL A 301 17 HET NXL B 301 17 HET NXL C 301 17 HET NXL D 301 17 HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETSYN NXL AVIBACTAM, BOUND FORM, NXL104, BOUND FORM FORMUL 5 NXL 4(C7 H13 N3 O6 S) FORMUL 9 HOH *185(H2 O) HELIX 1 1 TRP A 31 HIS A 38 1 8 HELIX 2 2 ASN A 58 ASN A 63 1 6 HELIX 3 3 PRO A 68 THR A 71 5 4 HELIX 4 4 PHE A 72 LEU A 83 1 12 HELIX 5 5 ILE A 102 ASN A 106 5 5 HELIX 6 6 ASN A 110 TYR A 117 1 8 HELIX 7 7 VAL A 119 GLY A 131 1 13 HELIX 8 8 GLY A 131 ASP A 143 1 13 HELIX 9 9 SER A 155 GLY A 160 1 6 HELIX 10 10 ALA A 166 HIS A 178 1 13 HELIX 11 11 SER A 184 MET A 195 1 12 HELIX 12 12 THR A 243 LEU A 247 5 5 HELIX 13 13 GLY A 248 GLU A 261 1 14 HELIX 14 14 TRP B 31 HIS B 38 1 8 HELIX 15 15 ASN B 58 ASN B 63 1 6 HELIX 16 16 PRO B 68 THR B 71 5 4 HELIX 17 17 PHE B 72 LEU B 83 1 12 HELIX 18 18 ILE B 102 ASN B 106 5 5 HELIX 19 19 ASN B 110 TYR B 117 1 8 HELIX 20 20 VAL B 119 GLY B 131 1 13 HELIX 21 21 GLY B 131 ASP B 143 1 13 HELIX 22 22 SER B 155 GLY B 160 1 6 HELIX 23 23 ALA B 166 HIS B 178 1 13 HELIX 24 24 SER B 184 MET B 195 1 12 HELIX 25 25 THR B 243 LEU B 247 5 5 HELIX 26 26 GLY B 248 GLU B 261 1 14 HELIX 27 27 TRP C 31 HIS C 38 1 8 HELIX 28 28 ASN C 58 ASN C 63 1 6 HELIX 29 29 PRO C 68 THR C 71 5 4 HELIX 30 30 PHE C 72 LEU C 83 1 12 HELIX 31 31 ILE C 102 ASN C 106 5 5 HELIX 32 32 ASN C 110 TYR C 117 1 8 HELIX 33 33 VAL C 119 GLY C 131 1 13 HELIX 34 34 GLY C 131 ASP C 143 1 13 HELIX 35 35 SER C 155 GLY C 160 1 6 HELIX 36 36 ALA C 166 HIS C 178 1 13 HELIX 37 37 SER C 184 MET C 195 1 12 HELIX 38 38 THR C 243 LEU C 247 5 5 HELIX 39 39 GLY C 248 GLU C 261 1 14 HELIX 40 40 TRP D 31 HIS D 38 1 8 HELIX 41 41 ASN D 58 ASN D 63 1 6 HELIX 42 42 PRO D 68 THR D 71 5 4 HELIX 43 43 PHE D 72 LEU D 83 1 12 HELIX 44 44 ILE D 102 ASN D 106 5 5 HELIX 45 45 ASN D 110 TYR D 117 1 8 HELIX 46 46 VAL D 119 GLY D 131 1 13 HELIX 47 47 GLY D 131 ASP D 143 1 13 HELIX 48 48 SER D 155 GLY D 160 1 6 HELIX 49 49 ALA D 166 HIS D 178 1 13 HELIX 50 50 SER D 184 MET D 195 1 12 HELIX 51 51 THR D 243 LEU D 247 5 5 HELIX 52 52 GLY D 248 GLU D 261 1 14 SHEET 1 A 7 GLN A 26 GLU A 27 0 SHEET 2 A 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 A 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 A 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 A 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 A 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 A 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 B 2 ALA A 65 PHE A 66 0 SHEET 2 B 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 C 7 GLN B 26 GLU B 27 0 SHEET 2 C 7 GLN B 53 THR B 56 1 O THR B 56 N GLN B 26 SHEET 3 C 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 C 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 C 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 C 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 C 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 D 2 ALA B 65 PHE B 66 0 SHEET 2 D 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 SHEET 1 E 7 TRP C 25 GLU C 27 0 SHEET 2 E 7 GLN C 53 THR C 56 1 O THR C 56 N GLN C 26 SHEET 3 E 7 GLY C 42 ASN C 48 -1 N LEU C 46 O PHE C 55 SHEET 4 E 7 VAL C 232 ASP C 240 -1 O ASN C 238 N VAL C 43 SHEET 5 E 7 ILE C 219 GLU C 227 -1 N GLY C 224 O PHE C 235 SHEET 6 E 7 ILE C 204 SER C 212 -1 N ILE C 204 O GLU C 227 SHEET 7 E 7 LEU C 196 ALA C 199 -1 N GLU C 198 O ILE C 205 SHEET 1 F 2 ALA C 65 PHE C 66 0 SHEET 2 F 2 ILE C 164 SER C 165 -1 O ILE C 164 N PHE C 66 SHEET 1 G 7 TRP D 25 GLU D 27 0 SHEET 2 G 7 GLN D 53 THR D 56 1 O THR D 56 N GLN D 26 SHEET 3 G 7 GLY D 42 ASN D 48 -1 N LEU D 46 O PHE D 55 SHEET 4 G 7 VAL D 232 ASP D 240 -1 O ASN D 238 N VAL D 43 SHEET 5 G 7 ILE D 219 GLU D 227 -1 N GLY D 224 O PHE D 235 SHEET 6 G 7 ILE D 204 SER D 212 -1 N ILE D 204 O GLU D 227 SHEET 7 G 7 LEU D 196 ALA D 199 -1 N GLU D 198 O ILE D 205 SHEET 1 H 2 ALA D 65 PHE D 66 0 SHEET 2 H 2 ILE D 164 SER D 165 -1 O ILE D 164 N PHE D 66 LINK OG SER A 70 CAN NXL A 301 1555 1555 1.33 LINK OG SER B 70 CAN NXL B 301 1555 1555 1.32 LINK OG SER D 70 CAN NXL D 301 1555 1555 1.33 LINK OG SER C 70 CAN NXL C 301 1555 1555 1.33 CISPEP 1 GLU A 216 PRO A 217 0 -5.97 CISPEP 2 GLU B 216 PRO B 217 0 -6.68 CISPEP 3 GLU C 216 PRO C 217 0 -3.09 CISPEP 4 GLU D 216 PRO D 217 0 -6.11 SITE 1 AC1 10 ALA A 69 SER A 70 SER A 118 VAL A 120 SITE 2 AC1 10 LYS A 208 THR A 209 GLY A 210 TYR A 211 SITE 3 AC1 10 THR A 213 ARG A 250 SITE 1 AC2 10 ALA B 69 SER B 70 SER B 118 VAL B 120 SITE 2 AC2 10 LEU B 158 LYS B 208 THR B 209 GLY B 210 SITE 3 AC2 10 TYR B 211 ARG B 250 SITE 1 AC3 9 ALA C 69 SER C 70 SER C 118 VAL C 120 SITE 2 AC3 9 LYS C 208 THR C 209 GLY C 210 TYR C 211 SITE 3 AC3 9 ARG C 250 SITE 1 AC4 9 ALA D 69 SER D 70 SER D 118 VAL D 120 SITE 2 AC4 9 LYS D 208 THR D 209 GLY D 210 TYR D 211 SITE 3 AC4 9 ARG D 250 CRYST1 64.050 108.100 162.810 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006142 0.00000