HEADER HYDROLASE 21-JAN-15 4S2M TITLE CRYSTAL STRUCTURE OF OXA-163 COMPLEXED WITH IODIDE IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 25-261; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: BLAOXA-163; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS GLOBULAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.STOJANOSKI,L.HU,T.G.PALZKILL,B.PRASAD REVDAT 3 20-SEP-23 4S2M 1 REMARK REVDAT 2 17-JUL-19 4S2M 1 REMARK REVDAT 1 22-JUL-15 4S2M 0 JRNL AUTH V.STOJANOSKI,D.C.CHOW,B.FRYSZCZYN,L.HU,P.NORDMANN,L.POIREL, JRNL AUTH 2 B.SANKARAN,B.V.PRASAD,T.PALZKILL JRNL TITL STRUCTURAL BASIS FOR DIFFERENT SUBSTRATE PROFILES OF TWO JRNL TITL 2 CLOSELY RELATED CLASS D BETA-LACTAMASES AND THEIR INHIBITION JRNL TITL 3 BY HALOGENS. JRNL REF BIOCHEMISTRY V. 54 3370 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25938261 JRNL DOI 10.1021/ACS.BIOCHEM.5B00298 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 20926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : -0.73000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.58000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.462 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.378 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7849 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7413 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10613 ; 1.494 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16961 ; 1.258 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 927 ; 6.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 408 ;40.219 ;24.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1380 ;19.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1117 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8949 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1991 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3732 ; 2.526 ; 3.694 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3731 ; 2.525 ; 3.694 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4651 ; 4.144 ; 5.534 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4117 ; 2.457 ; 3.895 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 25 261 B 25 261 14751 0.09 0.05 REMARK 3 2 A 25 261 C 25 261 14900 0.09 0.05 REMARK 3 3 A 25 261 D 25 261 14513 0.11 0.05 REMARK 3 4 B 25 261 C 25 261 14944 0.09 0.05 REMARK 3 5 B 25 261 D 25 261 14466 0.10 0.05 REMARK 3 6 C 25 261 D 25 261 14542 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4767 -0.1064 -0.4038 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.0474 REMARK 3 T33: 0.1281 T12: -0.0490 REMARK 3 T13: 0.0079 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.7896 L22: 0.2929 REMARK 3 L33: 3.0445 L12: 0.3733 REMARK 3 L13: 0.3626 L23: -0.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: -0.1441 S13: 0.1068 REMARK 3 S21: 0.0332 S22: -0.0082 S23: 0.0235 REMARK 3 S31: -0.1093 S32: -0.1431 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9187 18.2835 12.1959 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.1692 REMARK 3 T33: 0.0541 T12: 0.0216 REMARK 3 T13: 0.0148 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.6765 L22: 1.2451 REMARK 3 L33: 2.0315 L12: -0.7139 REMARK 3 L13: 0.2729 L23: -0.1313 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.1332 S13: -0.0371 REMARK 3 S21: -0.0895 S22: 0.0104 S23: 0.0305 REMARK 3 S31: 0.2634 S32: 0.4544 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 25 C 261 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7408 36.4986 14.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0446 REMARK 3 T33: 0.2287 T12: -0.0223 REMARK 3 T13: 0.0139 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.2621 L22: 1.9674 REMARK 3 L33: 3.2421 L12: -0.9725 REMARK 3 L13: 0.5995 L23: -0.5417 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.0735 S13: -0.0995 REMARK 3 S21: 0.0156 S22: 0.0244 S23: 0.3275 REMARK 3 S31: -0.1964 S32: -0.2109 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 25 D 261 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3179 -4.5442 -17.3713 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.3728 REMARK 3 T33: 0.1025 T12: 0.0197 REMARK 3 T13: -0.0103 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.6527 L22: 1.1043 REMARK 3 L33: 2.7256 L12: 0.0875 REMARK 3 L13: -0.5236 L23: -0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.0130 S13: -0.0359 REMARK 3 S21: 0.0230 S22: -0.0625 S23: -0.1488 REMARK 3 S31: 0.1508 S32: 0.8061 S33: 0.0459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4S2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22060 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 59.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM IODINE 15% W/V PEG3350, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 243 REMARK 465 SER A 244 REMARK 465 ASP A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 THR B 243 REMARK 465 SER B 244 REMARK 465 ASP B 245 REMARK 465 THR C 243 REMARK 465 SER C 244 REMARK 465 ASP C 245 REMARK 465 ASP D 245 REMARK 465 GLY D 246 REMARK 465 LEU D 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP B 222 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 TRP C 222 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 ASN D 146 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -126.74 50.38 REMARK 500 ASN A 106 48.37 -101.47 REMARK 500 SER A 155 -13.45 -140.35 REMARK 500 ALA A 207 141.72 -179.01 REMARK 500 ARG A 250 -64.43 154.03 REMARK 500 ALA B 69 -125.79 50.20 REMARK 500 ASN B 106 49.80 -101.70 REMARK 500 SER B 155 -12.84 -140.82 REMARK 500 ALA B 207 140.47 -179.35 REMARK 500 LYS B 218 -35.08 -36.33 REMARK 500 SER C 30 -39.65 -39.11 REMARK 500 ALA C 69 -126.08 51.33 REMARK 500 ASN C 106 50.04 -102.73 REMARK 500 ALA C 207 139.89 -179.39 REMARK 500 LYS C 218 -39.10 -34.27 REMARK 500 MET C 241 52.67 -112.15 REMARK 500 ALA D 69 -125.80 51.23 REMARK 500 ASN D 106 48.19 -101.23 REMARK 500 ALA D 207 141.53 -178.77 REMARK 500 LEU D 249 -53.92 -139.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S2L RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.72A WITHOUT IODINE IN THE ACTIVE SITE DBREF 4S2M A 25 265 UNP F6KZJ2 F6KZJ2_ENTCL 25 261 DBREF 4S2M B 25 265 UNP F6KZJ2 F6KZJ2_ENTCL 25 261 DBREF 4S2M C 25 265 UNP F6KZJ2 F6KZJ2_ENTCL 25 261 DBREF 4S2M D 25 265 UNP F6KZJ2 F6KZJ2_ENTCL 25 261 SEQRES 1 A 237 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 A 237 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 A 237 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 A 237 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SEQRES 5 A 237 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 A 237 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 A 237 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 A 237 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 A 237 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 A 237 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 A 237 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 A 237 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 A 237 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 A 237 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 A 237 ALA LYS THR GLY TYR ASP THR LYS ILE GLY TRP TRP VAL SEQRES 16 A 237 GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE PHE ALA SEQRES 17 A 237 MET ASN MET ASP MET PRO THR SER ASP GLY LEU GLY LEU SEQRES 18 A 237 ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN GLU LYS SEQRES 19 A 237 ILE ILE PRO SEQRES 1 B 237 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 B 237 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 B 237 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 B 237 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SEQRES 5 B 237 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 B 237 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 B 237 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 B 237 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 B 237 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 B 237 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 B 237 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 B 237 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 B 237 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 B 237 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 B 237 ALA LYS THR GLY TYR ASP THR LYS ILE GLY TRP TRP VAL SEQRES 16 B 237 GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE PHE ALA SEQRES 17 B 237 MET ASN MET ASP MET PRO THR SER ASP GLY LEU GLY LEU SEQRES 18 B 237 ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN GLU LYS SEQRES 19 B 237 ILE ILE PRO SEQRES 1 C 237 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 C 237 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 C 237 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 C 237 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SEQRES 5 C 237 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 C 237 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 C 237 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 C 237 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 C 237 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 C 237 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 C 237 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 C 237 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 C 237 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 C 237 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 C 237 ALA LYS THR GLY TYR ASP THR LYS ILE GLY TRP TRP VAL SEQRES 16 C 237 GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE PHE ALA SEQRES 17 C 237 MET ASN MET ASP MET PRO THR SER ASP GLY LEU GLY LEU SEQRES 18 C 237 ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN GLU LYS SEQRES 19 C 237 ILE ILE PRO SEQRES 1 D 237 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 D 237 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 D 237 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 D 237 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SEQRES 5 D 237 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 D 237 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 D 237 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 D 237 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 D 237 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 D 237 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 D 237 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 D 237 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 D 237 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 D 237 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 D 237 ALA LYS THR GLY TYR ASP THR LYS ILE GLY TRP TRP VAL SEQRES 16 D 237 GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE PHE ALA SEQRES 17 D 237 MET ASN MET ASP MET PRO THR SER ASP GLY LEU GLY LEU SEQRES 18 D 237 ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN GLU LYS SEQRES 19 D 237 ILE ILE PRO HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD B 301 1 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD C 301 1 HET IOD C 302 1 HET IOD C 303 1 HET IOD C 304 1 HET IOD D 301 1 HET IOD D 302 1 HET IOD D 303 1 HET IOD D 304 1 HET IOD D 305 1 HETNAM IOD IODIDE ION FORMUL 5 IOD 20(I 1-) FORMUL 25 HOH *69(H2 O) HELIX 1 1 TRP A 31 GLU A 37 1 7 HELIX 2 2 LYS A 60 ASN A 63 5 4 HELIX 3 3 PRO A 68 THR A 71 5 4 HELIX 4 4 PHE A 72 LEU A 83 1 12 HELIX 5 5 ILE A 102 ASN A 106 5 5 HELIX 6 6 ASN A 110 TYR A 117 1 8 HELIX 7 7 VAL A 119 ASP A 143 1 25 HELIX 8 8 ALA A 166 HIS A 178 1 13 HELIX 9 9 SER A 184 MET A 195 1 12 HELIX 10 10 LEU A 249 GLU A 261 1 13 HELIX 11 11 TRP B 31 GLU B 37 1 7 HELIX 12 12 LYS B 60 ASN B 63 5 4 HELIX 13 13 PRO B 68 THR B 71 5 4 HELIX 14 14 PHE B 72 LEU B 83 1 12 HELIX 15 15 ILE B 102 ASN B 106 5 5 HELIX 16 16 ASN B 110 TYR B 117 1 8 HELIX 17 17 VAL B 119 ASP B 143 1 25 HELIX 18 18 SER B 155 GLY B 160 1 6 HELIX 19 19 ALA B 166 HIS B 178 1 13 HELIX 20 20 SER B 184 MET B 195 1 12 HELIX 21 21 LEU B 249 GLU B 261 1 13 HELIX 22 22 TRP C 31 GLU C 37 1 7 HELIX 23 23 LYS C 60 ASN C 63 5 4 HELIX 24 24 PRO C 68 THR C 71 5 4 HELIX 25 25 PHE C 72 LEU C 83 1 12 HELIX 26 26 ILE C 102 ASN C 106 5 5 HELIX 27 27 ASN C 110 TYR C 117 1 8 HELIX 28 28 VAL C 119 ASP C 143 1 25 HELIX 29 29 ALA C 166 HIS C 178 1 13 HELIX 30 30 SER C 184 MET C 195 1 12 HELIX 31 31 LEU C 249 GLU C 261 1 13 HELIX 32 32 TRP D 31 GLU D 37 1 7 HELIX 33 33 LYS D 60 ASN D 63 5 4 HELIX 34 34 PRO D 68 THR D 71 5 4 HELIX 35 35 PHE D 72 LEU D 83 1 12 HELIX 36 36 ILE D 102 ASN D 106 5 5 HELIX 37 37 ASN D 110 TYR D 117 1 8 HELIX 38 38 VAL D 119 ASP D 143 1 25 HELIX 39 39 ALA D 166 HIS D 178 1 13 HELIX 40 40 SER D 184 MET D 195 1 12 HELIX 41 41 LEU D 249 GLU D 261 1 13 SHEET 1 A 7 GLN A 26 GLU A 27 0 SHEET 2 A 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26 SHEET 3 A 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 A 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 A 7 ILE A 219 GLU A 227 -1 N TRP A 222 O MET A 237 SHEET 6 A 7 ILE A 204 ALA A 207 -1 N ILE A 204 O GLU A 227 SHEET 7 A 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 B 2 ALA A 65 PHE A 66 0 SHEET 2 B 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 C 7 GLN B 26 GLU B 27 0 SHEET 2 C 7 GLN B 53 THR B 56 1 O GLY B 54 N GLN B 26 SHEET 3 C 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 C 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 C 7 ILE B 219 GLU B 227 -1 N TRP B 222 O MET B 237 SHEET 6 C 7 ILE B 204 ALA B 207 -1 N ILE B 204 O GLU B 227 SHEET 7 C 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 D 2 ALA B 65 PHE B 66 0 SHEET 2 D 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 SHEET 1 E 7 GLN C 26 GLU C 27 0 SHEET 2 E 7 GLN C 53 THR C 56 1 O GLY C 54 N GLN C 26 SHEET 3 E 7 GLY C 42 ASN C 48 -1 N ASN C 48 O GLN C 53 SHEET 4 E 7 VAL C 232 ASP C 240 -1 O ASN C 238 N VAL C 43 SHEET 5 E 7 ILE C 219 GLU C 227 -1 N TRP C 222 O MET C 237 SHEET 6 E 7 ILE C 204 ALA C 207 -1 N ILE C 204 O GLU C 227 SHEET 7 E 7 LEU C 196 ALA C 199 -1 N GLU C 198 O ILE C 205 SHEET 1 F 2 ALA C 65 PHE C 66 0 SHEET 2 F 2 ILE C 164 SER C 165 -1 O ILE C 164 N PHE C 66 SHEET 1 G 7 GLN D 26 GLU D 27 0 SHEET 2 G 7 GLN D 53 THR D 56 1 O GLY D 54 N GLN D 26 SHEET 3 G 7 GLY D 42 ASN D 48 -1 N ASN D 48 O GLN D 53 SHEET 4 G 7 VAL D 232 ASP D 240 -1 O ASN D 238 N VAL D 43 SHEET 5 G 7 ILE D 219 GLU D 227 -1 N TRP D 222 O MET D 237 SHEET 6 G 7 ILE D 204 ALA D 207 -1 N ILE D 204 O GLU D 227 SHEET 7 G 7 LEU D 196 ALA D 199 -1 N GLU D 198 O ILE D 205 SHEET 1 H 2 ALA D 65 PHE D 66 0 SHEET 2 H 2 ILE D 164 SER D 165 -1 O ILE D 164 N PHE D 66 CISPEP 1 GLY B 160 GLY B 161 0 9.31 SITE 1 AC1 1 TRP A 157 SITE 1 AC2 2 ARG A 206 ARG D 206 SITE 1 AC3 1 ARG A 186 SITE 1 AC4 3 ASN A 48 LYS A 51 LYS C 51 SITE 1 AC5 1 ASN A 32 SITE 1 AC6 1 LEU A 67 SITE 1 AC7 1 LYS A 180 SITE 1 AC8 2 ARG B 206 ARG C 206 SITE 1 AC9 1 TRP B 157 SITE 1 BC1 1 LEU B 67 SITE 1 BC2 1 LEU C 67 SITE 1 BC3 1 TRP D 157 SITE 1 BC4 2 HIS D 178 LYS D 180 SITE 1 BC5 1 LEU D 67 SITE 1 BC6 2 GLN D 41 GLY D 42 CRYST1 67.630 68.410 70.223 62.20 68.00 71.58 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014786 -0.004924 -0.004383 0.00000 SCALE2 0.000000 0.015407 -0.006637 0.00000 SCALE3 0.000000 0.000000 0.016723 0.00000