HEADER IMMUNE SYSTEM 22-JAN-15 4S2S TITLE CRYSTAL STRUCTURE OF FAB FRAGMENT OF MONOCLONAL ANTIBODY ROAB13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROAB13 FAB HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ROAB13 FAB LIGHT CHAIN; COMPND 6 CHAIN: L, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.CHAIN,J.ARNOLD,S.AKTHAR,M.NOURSADEGHI,T.LAPP,C.JI,D.NAIDER,Y.ZHANG, AUTHOR 2 L.GOVADA,E.SARIDAKIS,N.E.CHAYEN REVDAT 2 20-SEP-23 4S2S 1 REMARK REVDAT 1 24-JUN-15 4S2S 0 JRNL AUTH B.CHAIN,J.ARNOLD,S.AKTHAR,M.BRANDT,D.DAVIS,M.NOURSADEGHI, JRNL AUTH 2 T.LAPP,C.JI,S.SANKURATRI,Y.ZHANG,L.GOVADA,E.SARIDAKIS, JRNL AUTH 3 N.CHAYEN JRNL TITL A LINEAR EPITOPE IN THE N-TERMINAL DOMAIN OF CCR5 AND ITS JRNL TITL 2 INTERACTION WITH ANTIBODY. JRNL REF PLOS ONE V. 10 28381 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26030924 JRNL DOI 10.1371/JOURNAL.PONE.0128381 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 55811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.4026 - 5.6118 0.99 2800 166 0.1859 0.2008 REMARK 3 2 5.6118 - 4.4906 0.99 2768 140 0.1412 0.1749 REMARK 3 3 4.4906 - 3.9338 0.98 2716 165 0.1414 0.1641 REMARK 3 4 3.9338 - 3.5790 0.98 2742 152 0.1593 0.1895 REMARK 3 5 3.5790 - 3.3253 0.98 2711 144 0.1646 0.2332 REMARK 3 6 3.3253 - 3.1309 0.98 2723 136 0.1969 0.2535 REMARK 3 7 3.1309 - 2.9753 0.97 2675 152 0.1962 0.2621 REMARK 3 8 2.9753 - 2.8466 0.97 2721 128 0.2073 0.2516 REMARK 3 9 2.8466 - 2.7377 0.96 2663 139 0.2090 0.3174 REMARK 3 10 2.7377 - 2.6437 0.96 2660 145 0.2165 0.2742 REMARK 3 11 2.6437 - 2.5614 0.96 2657 161 0.2161 0.2813 REMARK 3 12 2.5614 - 2.4885 0.96 2649 134 0.2156 0.2746 REMARK 3 13 2.4885 - 2.4233 0.96 2632 142 0.2229 0.2940 REMARK 3 14 2.4233 - 2.3644 0.95 2646 140 0.2188 0.2805 REMARK 3 15 2.3644 - 2.3108 0.96 2646 139 0.2088 0.2759 REMARK 3 16 2.3108 - 2.2618 0.95 2633 142 0.2104 0.2590 REMARK 3 17 2.2618 - 2.2167 0.95 2613 126 0.1898 0.2545 REMARK 3 18 2.2167 - 2.1749 0.94 2620 125 0.1901 0.2499 REMARK 3 19 2.1749 - 2.1362 0.93 2577 144 0.2104 0.3191 REMARK 3 20 2.1362 - 2.1001 0.77 2123 116 0.3543 0.3931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6947 REMARK 3 ANGLE : 1.203 9435 REMARK 3 CHIRALITY : 0.048 1056 REMARK 3 PLANARITY : 0.007 1197 REMARK 3 DIHEDRAL : 15.097 2527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000088107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 15.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000 MONOMETHYL ETHER, 0.01M REMARK 280 NICKEL CHLORIDE, 0.1M TRIS, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 THR H 138 REMARK 465 GLY A 135 REMARK 465 ASP A 136 REMARK 465 THR A 137 REMARK 465 THR A 138 REMARK 465 GLY A 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR H 28 CG2 REMARK 470 THR H 31 CG2 REMARK 470 THR A 28 CG2 REMARK 470 THR A 31 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 369 O HOH H 429 1.88 REMARK 500 O HOH L 478 O HOH L 482 1.90 REMARK 500 O HOH L 377 O HOH L 506 1.92 REMARK 500 OE1 GLU L 61 O HOH L 365 1.94 REMARK 500 OH TYR H 58 O HOH H 331 1.95 REMARK 500 NE2 HIS L 195 OD2 ASP B 1 1.96 REMARK 500 SD MET L 4 O HOH L 310 1.97 REMARK 500 O HOH L 432 O HOH L 451 1.98 REMARK 500 O HOH B 447 O HOH B 461 1.98 REMARK 500 OE1 GLU A 88 O HOH A 405 1.98 REMARK 500 O ILE A 223 O HOH A 308 1.99 REMARK 500 OD1 ASP B 1 O HOH B 465 1.99 REMARK 500 O HOH B 378 O HOH B 494 2.00 REMARK 500 NH1 ARG A 44 O HOH A 362 2.01 REMARK 500 O PRO H 221 O HOH H 342 2.02 REMARK 500 O HOH H 312 O HOH H 396 2.02 REMARK 500 O HOH H 399 O HOH L 421 2.02 REMARK 500 O HOH H 400 O HOH H 415 2.03 REMARK 500 OD2 ASP B 1 O HOH B 432 2.05 REMARK 500 O HOH H 427 O HOH H 444 2.05 REMARK 500 O HOH B 440 O HOH B 471 2.06 REMARK 500 NZ LYS A 43 O HOH A 398 2.07 REMARK 500 N ASP B 1 O HOH B 309 2.07 REMARK 500 OG SER L 9 O HOH L 448 2.08 REMARK 500 O HOH L 372 O HOH L 382 2.08 REMARK 500 OE1 GLU H 88 O HOH H 404 2.09 REMARK 500 O HOH A 445 O HOH A 453 2.09 REMARK 500 O HOH H 374 O HOH H 376 2.09 REMARK 500 O HOH H 501 O HOH H 505 2.09 REMARK 500 OE1 GLU L 160 O HOH L 404 2.10 REMARK 500 O HOH B 336 O HOH B 473 2.11 REMARK 500 O GLU H 217 O HOH H 345 2.12 REMARK 500 NZ LYS A 43 O HOH A 451 2.12 REMARK 500 OH TYR H 32 O HOH H 493 2.12 REMARK 500 NZ LYS H 214 O HOH H 327 2.13 REMARK 500 OE1 GLU H 1 O HOH H 360 2.13 REMARK 500 N ASP L 1 OE1 GLU B 191 2.13 REMARK 500 O HOH A 326 O HOH A 361 2.14 REMARK 500 O HOH L 406 O HOH L 419 2.15 REMARK 500 OE1 GLU A 154 O HOH A 442 2.15 REMARK 500 O THR L 206 O HOH L 488 2.15 REMARK 500 OE2 GLU B 201 O HOH B 428 2.15 REMARK 500 OG SER B 159 O HOH B 366 2.16 REMARK 500 O HOH L 462 O HOH L 471 2.16 REMARK 500 OH TYR H 181 O HOH H 497 2.16 REMARK 500 O GLY L 134 O HOH L 452 2.16 REMARK 500 NE2 HIS A 170 O HOH A 301 2.18 REMARK 500 O HOH L 344 O HOH L 359 2.19 REMARK 500 OD1 ASP B 116 O HOH B 507 2.19 REMARK 500 O ASP L 157 O HOH L 374 2.19 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 379 O HOH B 383 1455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 8 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 102 -74.43 -95.24 REMARK 500 ARG H 102 -73.15 -96.33 REMARK 500 SER H 140 -51.70 92.64 REMARK 500 ALA H 207 -33.31 177.49 REMARK 500 ALA L 57 -36.42 63.68 REMARK 500 ARG L 114 -12.94 -151.78 REMARK 500 ALA L 115 131.91 89.94 REMARK 500 ASN A 76 62.52 -38.26 REMARK 500 ARG A 102 -109.90 -54.10 REMARK 500 SER A 140 -66.56 100.34 REMARK 500 PHE A 152 141.72 -173.21 REMARK 500 ASP A 179 -9.21 70.10 REMARK 500 ALA A 207 -32.92 -177.31 REMARK 500 PRO B 8 114.44 32.69 REMARK 500 ALA B 57 -33.99 61.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 7 PRO B 8 -125.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 4S2S H 1 224 PDB 4S2S 4S2S 1 224 DBREF 4S2S A 1 224 PDB 4S2S 4S2S 1 224 DBREF 4S2S L 1 217 PDB 4S2S 4S2S 1 217 DBREF 4S2S B 1 217 PDB 4S2S 4S2S 1 217 SEQRES 1 H 224 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 224 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 224 PHE THR PHE SER THR TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 224 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 224 THR GLY ASP ASN THR TYR TYR THR ASP SER VAL ARG GLY SEQRES 6 H 224 ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE LEU SEQRES 7 H 224 TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 H 224 MET TYR PHE CYS THR ARG GLY ARG GLY ASP ARG GLY ASP SEQRES 9 H 224 LEU PHE GLY TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 224 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 H 224 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 224 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 224 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 224 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 224 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 H 224 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 224 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO SEQRES 18 H 224 THR ILE LYS SEQRES 1 L 217 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 217 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 217 GLN SER LEU LEU TYR ARG GLY ASN GLN MET ASN TYR LEU SEQRES 4 L 217 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 217 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 217 ASP ARG PHE THR GLY SER GLY SER GLY THR GLU PHE THR SEQRES 7 L 217 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU THR VAL SEQRES 8 L 217 TYR TYR CYS GLN GLN TYR TYR THR TYR PRO ARG THR PHE SEQRES 9 L 217 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 L 217 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 217 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 217 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 217 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 217 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 217 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 217 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 217 SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 A 224 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 A 224 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 224 PHE THR PHE SER THR TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 A 224 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 A 224 THR GLY ASP ASN THR TYR TYR THR ASP SER VAL ARG GLY SEQRES 6 A 224 ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE LEU SEQRES 7 A 224 TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 A 224 MET TYR PHE CYS THR ARG GLY ARG GLY ASP ARG GLY ASP SEQRES 9 A 224 LEU PHE GLY TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 224 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 A 224 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 A 224 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 A 224 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 A 224 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 A 224 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 A 224 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 A 224 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO SEQRES 18 A 224 THR ILE LYS SEQRES 1 B 217 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 B 217 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 B 217 GLN SER LEU LEU TYR ARG GLY ASN GLN MET ASN TYR LEU SEQRES 4 B 217 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 B 217 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 B 217 ASP ARG PHE THR GLY SER GLY SER GLY THR GLU PHE THR SEQRES 7 B 217 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU THR VAL SEQRES 8 B 217 TYR TYR CYS GLN GLN TYR TYR THR TYR PRO ARG THR PHE SEQRES 9 B 217 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 B 217 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 B 217 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 B 217 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 B 217 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 B 217 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 B 217 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 B 217 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 B 217 SER PRO ILE VAL LYS SER PHE ASN ARG FORMUL 5 HOH *789(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ASP H 61 ARG H 64 5 4 HELIX 3 3 ARG H 86 THR H 90 5 5 HELIX 4 4 SER H 162 SER H 164 5 3 HELIX 5 5 LYS L 85 LEU L 89 5 5 HELIX 6 6 SER L 127 SER L 133 1 7 HELIX 7 7 LYS L 189 GLU L 193 1 5 HELIX 8 8 THR A 28 TYR A 32 5 5 HELIX 9 9 ASP A 61 ARG A 64 5 4 HELIX 10 10 ARG A 86 THR A 90 5 5 HELIX 11 11 SER A 162 SER A 164 5 3 HELIX 12 12 LYS B 85 LEU B 89 5 5 HELIX 13 13 SER B 127 SER B 133 1 7 HELIX 14 14 LYS B 189 GLU B 193 1 5 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 A 4 ILE H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 A 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 B 6 ALA H 91 GLY H 98 -1 N TYR H 93 O THR H 113 SHEET 4 B 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 94 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 C 4 ALA H 91 GLY H 98 -1 N TYR H 93 O THR H 113 SHEET 4 C 4 PHE H 106 TRP H 109 -1 O TYR H 108 N ARG H 97 SHEET 1 D 4 SER H 126 LEU H 130 0 SHEET 2 D 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 D 4 LEU H 180 THR H 190 -1 O VAL H 187 N LEU H 144 SHEET 4 D 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 E 4 SER H 126 LEU H 130 0 SHEET 2 E 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 E 4 LEU H 180 THR H 190 -1 O VAL H 187 N LEU H 144 SHEET 4 E 4 VAL H 175 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 F 3 THR H 157 TRP H 160 0 SHEET 2 F 3 THR H 200 HIS H 205 -1 O ALA H 204 N THR H 157 SHEET 3 F 3 THR H 210 LYS H 215 -1 O LYS H 214 N CYS H 201 SHEET 1 G 4 MET L 4 SER L 7 0 SHEET 2 G 4 VAL L 19 SER L 25 -1 O LYS L 24 N SER L 5 SHEET 3 G 4 GLU L 76 ILE L 81 -1 O PHE L 77 N CYS L 23 SHEET 4 G 4 PHE L 68 SER L 73 -1 N THR L 69 O THR L 80 SHEET 1 H 6 SER L 10 VAL L 13 0 SHEET 2 H 6 THR L 108 ILE L 112 1 O GLU L 111 N VAL L 13 SHEET 3 H 6 VAL L 91 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 H 6 LEU L 39 GLN L 44 -1 N TYR L 42 O TYR L 93 SHEET 5 H 6 PRO L 50 TYR L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 H 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 I 4 SER L 10 VAL L 13 0 SHEET 2 I 4 THR L 108 ILE L 112 1 O GLU L 111 N VAL L 13 SHEET 3 I 4 VAL L 91 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 I 4 THR L 103 PHE L 104 -1 O THR L 103 N GLN L 96 SHEET 1 J 4 THR L 120 PHE L 124 0 SHEET 2 J 4 GLY L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 J 4 TYR L 179 THR L 188 -1 O LEU L 185 N VAL L 138 SHEET 4 J 4 VAL L 165 TRP L 169 -1 N SER L 168 O SER L 182 SHEET 1 K 4 SER L 159 ARG L 161 0 SHEET 2 K 4 ASN L 151 ILE L 156 -1 N ILE L 156 O SER L 159 SHEET 3 K 4 SER L 197 THR L 203 -1 O GLU L 201 N LYS L 153 SHEET 4 K 4 ILE L 211 ASN L 216 -1 O LYS L 213 N CYS L 200 SHEET 1 L 4 GLN A 3 SER A 7 0 SHEET 2 L 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 L 4 ILE A 77 MET A 82 -1 O LEU A 80 N LEU A 20 SHEET 4 L 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 M 6 GLY A 10 VAL A 12 0 SHEET 2 M 6 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 M 6 ALA A 91 GLY A 98 -1 N ALA A 91 O VAL A 115 SHEET 4 M 6 MET A 34 GLN A 39 -1 N VAL A 37 O PHE A 94 SHEET 5 M 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 M 6 THR A 57 TYR A 59 -1 O TYR A 58 N SER A 50 SHEET 1 N 4 GLY A 10 VAL A 12 0 SHEET 2 N 4 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 N 4 ALA A 91 GLY A 98 -1 N ALA A 91 O VAL A 115 SHEET 4 N 4 PHE A 106 TRP A 109 -1 O TYR A 108 N ARG A 97 SHEET 1 O 4 SER A 126 LEU A 130 0 SHEET 2 O 4 SER A 141 TYR A 151 -1 O LEU A 147 N TYR A 128 SHEET 3 O 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 O 4 VAL A 169 THR A 171 -1 N HIS A 170 O SER A 186 SHEET 1 P 4 SER A 126 LEU A 130 0 SHEET 2 P 4 SER A 141 TYR A 151 -1 O LEU A 147 N TYR A 128 SHEET 3 P 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 P 4 VAL A 175 GLN A 177 -1 N GLN A 177 O LEU A 180 SHEET 1 Q 3 THR A 157 TRP A 160 0 SHEET 2 Q 3 THR A 200 ALA A 204 -1 O ASN A 202 N THR A 159 SHEET 3 Q 3 LYS A 211 LYS A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 R 4 MET B 4 SER B 7 0 SHEET 2 R 4 VAL B 19 SER B 25 -1 O LYS B 24 N SER B 5 SHEET 3 R 4 GLU B 76 ILE B 81 -1 O PHE B 77 N CYS B 23 SHEET 4 R 4 PHE B 68 SER B 73 -1 N THR B 69 O THR B 80 SHEET 1 S 6 SER B 10 VAL B 13 0 SHEET 2 S 6 THR B 108 ILE B 112 1 O GLU B 111 N VAL B 13 SHEET 3 S 6 VAL B 91 GLN B 96 -1 N TYR B 92 O THR B 108 SHEET 4 S 6 LEU B 39 GLN B 44 -1 N ALA B 40 O GLN B 95 SHEET 5 S 6 LYS B 51 TYR B 55 -1 O LEU B 53 N TRP B 41 SHEET 6 S 6 THR B 59 ARG B 60 -1 O THR B 59 N TYR B 55 SHEET 1 T 4 SER B 10 VAL B 13 0 SHEET 2 T 4 THR B 108 ILE B 112 1 O GLU B 111 N VAL B 13 SHEET 3 T 4 VAL B 91 GLN B 96 -1 N TYR B 92 O THR B 108 SHEET 4 T 4 THR B 103 PHE B 104 -1 O THR B 103 N GLN B 96 SHEET 1 U 4 THR B 120 PHE B 124 0 SHEET 2 U 4 GLY B 135 PHE B 145 -1 O PHE B 141 N SER B 122 SHEET 3 U 4 TYR B 179 THR B 188 -1 O LEU B 185 N VAL B 138 SHEET 4 U 4 VAL B 165 TRP B 169 -1 N SER B 168 O SER B 182 SHEET 1 V 4 SER B 159 ARG B 161 0 SHEET 2 V 4 ASN B 151 ILE B 156 -1 N ILE B 156 O SER B 159 SHEET 3 V 4 SER B 197 THR B 203 -1 O THR B 199 N LYS B 155 SHEET 4 V 4 ILE B 211 ASN B 216 -1 O LYS B 213 N CYS B 200 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 94 1555 1555 2.06 SSBOND 4 CYS L 140 CYS L 200 1555 1555 2.07 SSBOND 5 CYS A 22 CYS A 95 1555 1555 2.04 SSBOND 6 CYS A 146 CYS A 201 1555 1555 2.05 SSBOND 7 CYS B 23 CYS B 94 1555 1555 2.04 SSBOND 8 CYS B 140 CYS B 200 1555 1555 2.05 CISPEP 1 PHE H 152 PRO H 153 0 -3.91 CISPEP 2 GLU H 154 PRO H 155 0 3.09 CISPEP 3 TRP H 194 PRO H 195 0 11.22 CISPEP 4 SER L 7 PRO L 8 0 -17.16 CISPEP 5 TYR L 100 PRO L 101 0 -2.80 CISPEP 6 TYR L 146 PRO L 147 0 2.39 CISPEP 7 PHE A 152 PRO A 153 0 -7.78 CISPEP 8 GLU A 154 PRO A 155 0 2.26 CISPEP 9 TRP A 194 PRO A 195 0 5.77 CISPEP 10 TYR B 100 PRO B 101 0 2.82 CISPEP 11 TYR B 146 PRO B 147 0 3.05 CRYST1 75.200 88.640 78.450 90.00 103.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013298 0.000000 0.003117 0.00000 SCALE2 0.000000 0.011282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013092 0.00000