HEADER OXIDOREDUCTASE 26-JAN-15 4S38 TITLE ISPG IN COMPLEX MECPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE; COMPND 5 EC: 1.17.7.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8/DSM 579; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: ISPG, TTHA0305; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS METHYLERYTHRITOL-PHOSPHATE PATHWAY, TERPENE BIOSYNTHESIS, IRON-SULFUR KEYWDS 2 ENZYMES, REACTION MECHANISMS, DRUG DEVELOPMENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.QUITTERER,A.FRANK,K.WANG,R.GUODONG,B.O'DOWD,J.LI,F.GUERRA,S.ABDEL- AUTHOR 2 AZEIM,A.BACHER,J.EPPINGER,E.OLDFIELD,M.GROLL REVDAT 4 06-DEC-23 4S38 1 REMARK REVDAT 3 20-SEP-23 4S38 1 REMARK LINK REVDAT 2 01-JUL-15 4S38 1 JRNL REVDAT 1 29-APR-15 4S38 0 JRNL AUTH F.QUITTERER,A.FRANK,K.WANG,G.RAO,B.O'DOWD,J.LI,F.GUERRA, JRNL AUTH 2 S.ABDEL-AZEIM,A.BACHER,J.EPPINGER,E.OLDFIELD,M.GROLL JRNL TITL ATOMIC-RESOLUTION STRUCTURES OF DISCRETE STAGES ON THE JRNL TITL 2 REACTION COORDINATE OF THE [FE4S4] ENZYME ISPG (GCPE). JRNL REF J.MOL.BIOL. V. 427 2220 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 25868383 JRNL DOI 10.1016/J.JMB.2015.04.002 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 86401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.112 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 305 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3333 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3305 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4571 ; 2.764 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7632 ; 1.444 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 5.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.436 ;22.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;12.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.249 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3685 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1664 ; 3.205 ; 1.586 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1663 ; 3.199 ; 1.584 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2098 ; 3.697 ; 2.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2099 ; 3.698 ; 2.393 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 5.628 ; 2.191 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1668 ; 5.627 ; 2.191 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2411 ; 6.398 ; 3.057 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3981 ; 6.153 ;15.519 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3982 ; 6.154 ;15.527 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6637 ; 6.410 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 103 ;42.200 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6852 ;14.668 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 404 REMARK 3 RESIDUE RANGE : A 900 A 908 REMARK 3 RESIDUE RANGE : A 1001 A 1382 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7564 23.2005 2.7606 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0064 REMARK 3 T33: 0.0072 T12: -0.0003 REMARK 3 T13: -0.0047 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0029 L22: 0.0002 REMARK 3 L33: 0.0011 L12: 0.0007 REMARK 3 L13: 0.0016 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0004 S13: 0.0010 REMARK 3 S21: -0.0000 S22: 0.0005 S23: 0.0002 REMARK 3 S31: 0.0009 S32: -0.0001 S33: -0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4S38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000088123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT. SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, 20% PEG3350, REMARK 280 0.2 M NA2SO4, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 276K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 405 REMARK 465 ALA A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 53 CD GLU A 53 OE1 -0.069 REMARK 500 GLU A 176 CD GLU A 176 OE2 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 158 CG - SD - CE ANGL. DEV. = 31.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 90 -51.48 73.34 REMARK 500 SER A 148 52.94 -147.79 REMARK 500 ALA A 203 87.55 -154.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE FUNCTIONAL ALCOHOL GROUP AT POSITION C2 OF RESIDUE CDI REACTS REMARK 600 WITH THE THE IRON FORMING AN ALKOXID-COMPLEX REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 901 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 297 SG REMARK 620 2 SF4 A 901 S1 110.1 REMARK 620 3 SF4 A 901 S2 123.6 104.2 REMARK 620 4 SF4 A 901 S3 107.6 110.0 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 901 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 SF4 A 901 S2 117.3 REMARK 620 3 SF4 A 901 S3 122.0 100.6 REMARK 620 4 SF4 A 901 S4 103.3 108.1 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 901 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 343 SG REMARK 620 2 SF4 A 901 S1 123.4 REMARK 620 3 SF4 A 901 S2 110.1 105.5 REMARK 620 4 SF4 A 901 S4 104.4 103.4 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 901 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CDI A 900 O1 REMARK 620 2 SF4 A 901 S1 111.5 REMARK 620 3 SF4 A 901 S3 114.3 108.7 REMARK 620 4 SF4 A 901 S4 115.1 102.7 103.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDI A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G9P RELATED DB: PDB REMARK 900 STRUCTURE OF THE GCPE-MECPP (ISPG) COMPLEX FROM THERMUS THERMOPHILU REMARK 900 RELATED ID: 2Y0F RELATED DB: PDB REMARK 900 STRUCTURE OF GCPE (ISPG) FROM THERMUS THERMOPHILUS HB27 REMARK 900 RELATED ID: 3NOY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ISPG (GCPE) REMARK 900 RELATED ID: 4S39 RELATED DB: PDB REMARK 900 RELATED ID: 4S3A RELATED DB: PDB REMARK 900 RELATED ID: 4S3B RELATED DB: PDB REMARK 900 RELATED ID: 4S3C RELATED DB: PDB REMARK 900 RELATED ID: 4S3D RELATED DB: PDB REMARK 900 RELATED ID: 4S3E RELATED DB: PDB REMARK 900 RELATED ID: 4S3F RELATED DB: PDB DBREF 4S38 A 1 406 UNP Q5SLI8 ISPG_THET8 1 406 SEQRES 1 A 406 MET GLU GLY MET ARG ARG PRO THR PRO THR VAL TYR VAL SEQRES 2 A 406 GLY ARG VAL PRO ILE GLY GLY ALA HIS PRO ILE ALA VAL SEQRES 3 A 406 GLN SER MET THR ASN THR PRO THR ARG ASP VAL GLU ALA SEQRES 4 A 406 THR THR ALA GLN VAL LEU GLU LEU HIS ARG ALA GLY SER SEQRES 5 A 406 GLU ILE VAL ARG LEU THR VAL ASN ASP GLU GLU ALA ALA SEQRES 6 A 406 LYS ALA VAL PRO GLU ILE LYS ARG ARG LEU LEU ALA GLU SEQRES 7 A 406 GLY ALA GLU VAL PRO LEU VAL GLY ASP PHE HIS PHE ASN SEQRES 8 A 406 GLY HIS LEU LEU LEU ARG LYS TYR PRO LYS MET ALA GLU SEQRES 9 A 406 ALA LEU ASP KCX PHE ARG ILE ASN PRO GLY THR LEU GLY SEQRES 10 A 406 ARG GLY ARG HIS LYS ASP GLU HIS PHE ALA GLU MET ILE SEQRES 11 A 406 ARG ILE ALA MET ASP LEU GLY LYS PRO VAL ARG ILE GLY SEQRES 12 A 406 ALA ASN TRP GLY SER LEU ASP PRO ALA LEU LEU THR GLU SEQRES 13 A 406 LEU MET ASP ARG ASN ALA ARG ARG PRO GLU PRO LYS SER SEQRES 14 A 406 ALA HIS GLU VAL VAL LEU GLU ALA LEU VAL GLU SER ALA SEQRES 15 A 406 VAL ARG ALA TYR GLU ALA ALA LEU GLU MET GLY LEU GLY SEQRES 16 A 406 GLU ASP LYS LEU VAL LEU SER ALA LYS VAL SER LYS ALA SEQRES 17 A 406 ARG ASP LEU VAL TRP VAL TYR ARG GLU LEU ALA ARG ARG SEQRES 18 A 406 THR GLN ALA PRO LEU HIS LEU GLY LEU THR GLU ALA GLY SEQRES 19 A 406 MET GLY VAL LYS GLY ILE VAL ALA SER ALA ALA ALA LEU SEQRES 20 A 406 ALA PRO LEU LEU LEU GLU GLY ILE GLY ASP THR ILE ARG SEQRES 21 A 406 VAL SER LEU THR PRO ALA PRO GLY GLU PRO ARG THR LYS SEQRES 22 A 406 GLU VAL GLU VAL ALA GLN GLU ILE LEU GLN ALA LEU GLY SEQRES 23 A 406 LEU ARG ALA PHE ALA PRO GLU VAL THR SER CYS PRO GLY SEQRES 24 A 406 CYS GLY ARG THR THR SER THR PHE PHE GLN GLU LEU ALA SEQRES 25 A 406 GLU GLU VAL SER ARG ARG LEU LYS GLU ARG LEU PRO GLU SEQRES 26 A 406 TRP ARG ALA ARG TYR PRO GLY VAL GLU GLU LEU LYS VAL SEQRES 27 A 406 ALA VAL MET GLY CYS VAL VAL ASN GLY PRO GLY GLU SER SEQRES 28 A 406 LYS HIS ALA HIS ILE GLY ILE SER LEU PRO GLY ALA GLY SEQRES 29 A 406 GLU GLU PRO LYS ALA PRO VAL TYR ALA ASP GLY LYS LEU SEQRES 30 A 406 LEU THR ILE LEU LYS GLY GLU GLY ILE ALA GLU GLU PHE SEQRES 31 A 406 LEU ARG LEU VAL GLU ASP TYR VAL LYS THR ARG PHE ALA SEQRES 32 A 406 PRO LYS ALA MODRES 4S38 KCX A 108 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 108 12 HET CDI A 900 16 HET SF4 A 901 8 HET MES A 902 12 HET GOL A 903 6 HET GOL A 904 6 HET GOL A 905 6 HET PEG A 906 7 HET PEG A 907 7 HET 1PE A 908 16 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CDI 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CDI C5 H12 O9 P2 FORMUL 3 SF4 FE4 S4 FORMUL 4 MES C6 H13 N O4 S FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 1PE C10 H22 O6 FORMUL 11 HOH *382(H2 O) HELIX 1 1 ASP A 36 GLY A 51 1 16 HELIX 2 2 ASP A 61 GLU A 78 1 18 HELIX 3 3 ASN A 91 TYR A 99 1 9 HELIX 4 4 TYR A 99 LEU A 106 1 8 HELIX 5 5 ARG A 120 GLY A 137 1 18 HELIX 6 6 GLY A 147 LEU A 149 5 3 HELIX 7 7 ASP A 150 ARG A 163 1 14 HELIX 8 8 SER A 169 GLY A 193 1 25 HELIX 9 9 GLY A 195 ASP A 197 5 3 HELIX 10 10 LYS A 207 THR A 222 1 16 HELIX 11 11 GLY A 236 GLU A 253 1 18 HELIX 12 12 THR A 272 LEU A 285 1 14 HELIX 13 13 THR A 306 TYR A 330 1 25 HELIX 14 14 GLY A 332 GLU A 335 5 4 HELIX 15 15 ASN A 346 ALA A 354 1 9 HELIX 16 16 GLY A 385 PHE A 402 1 18 SHEET 1 A 2 VAL A 11 VAL A 13 0 SHEET 2 A 2 VAL A 16 ILE A 18 -1 O VAL A 16 N VAL A 13 SHEET 1 B 8 LEU A 199 LYS A 204 0 SHEET 2 B 8 VAL A 140 ASN A 145 1 N ALA A 144 O SER A 202 SHEET 3 B 8 KCX A 108 ILE A 111 1 N ILE A 111 O GLY A 143 SHEET 4 B 8 LEU A 84 ASP A 87 1 N GLY A 86 O ARG A 110 SHEET 5 B 8 ILE A 54 THR A 58 1 N LEU A 57 O VAL A 85 SHEET 6 B 8 ALA A 25 MET A 29 1 N SER A 28 O ARG A 56 SHEET 7 B 8 THR A 258 ILE A 259 1 O ILE A 259 N ALA A 25 SHEET 8 B 8 HIS A 227 LEU A 228 1 N LEU A 228 O THR A 258 SHEET 1 C 2 GLY A 234 MET A 235 0 SHEET 2 C 2 LEU A 263 THR A 264 1 O THR A 264 N GLY A 234 SHEET 1 D 5 GLU A 293 SER A 296 0 SHEET 2 D 5 LYS A 337 MET A 341 1 O VAL A 338 N THR A 295 SHEET 3 D 5 ILE A 356 SER A 359 1 O ILE A 358 N MET A 341 SHEET 4 D 5 ALA A 369 ALA A 373 -1 O TYR A 372 N GLY A 357 SHEET 5 D 5 LYS A 376 LEU A 381 -1 O LEU A 378 N VAL A 371 LINK C ASP A 107 N KCX A 108 1555 1555 1.32 LINK C KCX A 108 N PHE A 109 1555 1555 1.32 LINK SG CYS A 297 FE4 SF4 A 901 1555 1555 2.32 LINK SG CYS A 300 FE1 SF4 A 901 1555 1555 2.30 LINK SG CYS A 343 FE3 SF4 A 901 1555 1555 2.31 LINK O1 CDI A 900 FE2 SF4 A 901 1555 1555 1.90 SITE 1 AC1 13 ARG A 56 ASP A 87 HIS A 89 ARG A 110 SITE 2 AC1 13 ARG A 141 ASN A 145 LYS A 204 THR A 231 SITE 3 AC1 13 GLU A 232 ARG A 260 SER A 262 ASN A 346 SITE 4 AC1 13 SF4 A 901 SITE 1 AC2 7 CYS A 297 GLY A 299 CYS A 300 THR A 303 SITE 2 AC2 7 GLY A 342 CYS A 343 CDI A 900 SITE 1 AC3 10 LYS A 238 GLU A 280 GLN A 283 ALA A 291 SITE 2 AC3 10 PRO A 292 GLU A 293 VAL A 294 SER A 316 SITE 3 AC3 10 HOH A1096 HOH A1102 SITE 1 AC4 6 MET A 158 ASP A 159 LEU A 381 ARG A 392 SITE 2 AC4 6 HOH A1085 HOH A1225 SITE 1 AC5 8 ASN A 31 PRO A 265 ALA A 266 GLY A 268 SITE 2 AC5 8 GLU A 269 ARG A 271 GLN A 309 HOH A1089 SITE 1 AC6 4 ALA A 50 GLN A 279 ARG A 327 HOH A1289 SITE 1 AC7 6 LYS A 352 TYR A 372 LYS A 376 LEU A 377 SITE 2 AC7 6 HOH A1081 HOH A1298 SITE 1 AC8 6 ARG A 131 ARG A 329 LYS A 399 HOH A1286 SITE 2 AC8 6 HOH A1337 HOH A1357 SITE 1 AC9 7 TYR A 186 LEU A 190 GLU A 191 GLU A 196 SITE 2 AC9 7 GLN A 223 HOH A1317 HOH A1374 CRYST1 111.730 62.140 87.040 90.00 127.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008950 0.000000 0.006892 0.00000 SCALE2 0.000000 0.016093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014501 0.00000