HEADER TRANSFERASE 26-MAR-15 4S3R TITLE AMYLOMALTASE MALQ FROM ESCHERICHIA COLI IN COMPLEX WITH THE PSEUDO- TITLE 2 HEPTASACCHARIDE ACARVIOSINE-GLUCOSE-ACARBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMYLOMALTASE, DISPROPORTIONATING ENZYME, D-ENZYME; COMPND 5 EC: 2.4.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B3416, JW3379, MALA, MALQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK75-HIS KEYWDS ACARBOSE-DERIVED HEPTASACCHARIDE, GLUCOSIDE HYDROLASE CLAN H, KEYWDS 2 MALTOSE, MALTODEXTRIN, TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.WEISS,A.SCHIEFNER REVDAT 4 22-NOV-17 4S3R 1 REMARK REVDAT 3 16-SEP-15 4S3R 1 JRNL REVDAT 2 15-JUL-15 4S3R 1 JRNL REVDAT 1 08-JUL-15 4S3R 0 JRNL AUTH S.C.WEISS,A.SKERRA,A.SCHIEFNER JRNL TITL STRUCTURAL BASIS FOR THE INTERCONVERSION OF MALTODEXTRINS BY JRNL TITL 2 MALQ, THE AMYLOMALTASE OF ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 290 21352 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26139606 JRNL DOI 10.1074/JBC.M115.667337 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.21000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : -1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5651 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5246 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7690 ; 1.400 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12084 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 5.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;35.189 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 854 ;13.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.841 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 830 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6349 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 1.203 ; 2.454 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2717 ; 1.203 ; 2.453 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3394 ; 1.850 ; 3.673 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3608 1.2915 19.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.2655 REMARK 3 T33: 0.3805 T12: -0.0574 REMARK 3 T13: 0.0398 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.6964 L22: 2.7798 REMARK 3 L33: 7.0034 L12: 2.5430 REMARK 3 L13: 1.6209 L23: 1.3033 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.0543 S13: 0.0755 REMARK 3 S21: -0.0797 S22: -0.0192 S23: 0.4268 REMARK 3 S31: 0.0946 S32: -0.5924 S33: 0.1284 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8611 -27.6202 27.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.0550 REMARK 3 T33: 0.1917 T12: 0.0125 REMARK 3 T13: 0.0329 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 3.3311 L22: 6.3753 REMARK 3 L33: 1.2597 L12: 2.4944 REMARK 3 L13: -0.1786 L23: 0.6210 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.1054 S13: -0.0983 REMARK 3 S21: 0.0502 S22: -0.0300 S23: 0.1880 REMARK 3 S31: 0.0580 S32: -0.1372 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9822 3.9465 12.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0283 REMARK 3 T33: 0.0282 T12: 0.0100 REMARK 3 T13: 0.0052 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.2747 L22: 0.8137 REMARK 3 L33: 1.3136 L12: 0.3276 REMARK 3 L13: -0.1849 L23: -0.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.1600 S13: -0.1778 REMARK 3 S21: -0.0309 S22: -0.0032 S23: -0.0200 REMARK 3 S31: 0.2276 S32: 0.0659 S33: 0.0579 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 486 A 690 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9175 19.4332 33.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.0597 REMARK 3 T33: 0.0199 T12: -0.0231 REMARK 3 T13: 0.0052 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.5244 L22: 1.2755 REMARK 3 L33: 1.4233 L12: -0.0586 REMARK 3 L13: -0.0290 L23: 0.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.1691 S13: 0.0596 REMARK 3 S21: 0.2888 S22: -0.0281 S23: 0.0888 REMARK 3 S31: 0.0001 S32: 0.0277 S33: 0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4S3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000088142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98206, 0.98004, 0.97982, REMARK 200 0.97857 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 %(W/V) PEG3350, 350 MM NACL, 20 MM REMARK 280 TRIS-HCL, PROTEIN CONCENTRATION 13 MG/ML, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLN A 43 REMARK 465 ARG A 44 REMARK 465 THR A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 LYS A 48 REMARK 465 VAL A 49 REMARK 465 ALA A 50 REMARK 465 VAL A 51 REMARK 465 HIS A 691 REMARK 465 HIS A 692 REMARK 465 HIS A 693 REMARK 465 HIS A 694 REMARK 465 HIS A 695 REMARK 465 HIS A 696 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 661 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 661 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 687 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 116 -115.72 53.59 REMARK 500 LEU A 190 -135.99 -110.86 REMARK 500 SER A 202 55.53 -119.64 REMARK 500 ASP A 309 112.03 -161.60 REMARK 500 ASP A 497 62.07 -103.35 REMARK 500 SER A 653 -77.81 -121.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE DEPOSITORS STATE THAT THE FREE ANOMERIC C1 OF THE TERMINAL REMARK 600 GLUCOSE MOIETY ADOPTS BOTH ALPHA-D GLUCOSE AND BETA-D-GLUCOSE REMARK 600 CONFIGURATIONS, OF WHICH THE BETA OCCURS IN 64 % OF THE MOLECULES. REMARK 600 THE BETA-FORM WAS BUILT BECAUSE IT BETTER FITS THE ELECTRON DENSITY. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7SA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 708 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S3P RELATED DB: PDB REMARK 900 RELATED ID: 4S3Q RELATED DB: PDB DBREF 4S3R A 1 688 UNP P15977 MALQ_ECOLI 1 688 SEQADV 4S3R SER A 689 UNP P15977 EXPRESSION TAG SEQADV 4S3R ALA A 690 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 691 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 692 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 693 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 694 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 695 UNP P15977 EXPRESSION TAG SEQADV 4S3R HIS A 696 UNP P15977 EXPRESSION TAG SEQRES 1 A 696 MSE GLU SER LYS ARG LEU ASP ASN ALA ALA LEU ALA ALA SEQRES 2 A 696 GLY ILE SER PRO ASN TYR ILE ASN ALA HIS GLY LYS PRO SEQRES 3 A 696 GLN SER ILE SER ALA GLU THR LYS ARG ARG LEU LEU ASP SEQRES 4 A 696 ALA MSE HIS GLN ARG THR ALA THR LYS VAL ALA VAL THR SEQRES 5 A 696 PRO VAL PRO ASN VAL MSE VAL TYR THR SER GLY LYS LYS SEQRES 6 A 696 MSE PRO MSE VAL VAL GLU GLY SER GLY GLU TYR SER TRP SEQRES 7 A 696 LEU LEU THR THR GLU GLU GLY THR GLN TYR LYS GLY HIS SEQRES 8 A 696 VAL THR GLY GLY LYS ALA PHE ASN LEU PRO THR LYS LEU SEQRES 9 A 696 PRO GLU GLY TYR HIS THR LEU THR LEU THR GLN ASP ASP SEQRES 10 A 696 GLN ARG ALA HIS CYS ARG VAL ILE VAL ALA PRO LYS ARG SEQRES 11 A 696 CYS TYR GLU PRO GLN ALA LEU LEU ASN LYS GLN LYS LEU SEQRES 12 A 696 TRP GLY ALA CYS VAL GLN LEU TYR THR LEU ARG SER GLU SEQRES 13 A 696 LYS ASN TRP GLY ILE GLY ASP PHE GLY ASP LEU LYS ALA SEQRES 14 A 696 MSE LEU VAL ASP VAL ALA LYS ARG GLY GLY SER PHE ILE SEQRES 15 A 696 GLY LEU ASN PRO ILE HIS ALA LEU TYR PRO ALA ASN PRO SEQRES 16 A 696 GLU SER ALA SER PRO TYR SER PRO SER SER ARG ARG TRP SEQRES 17 A 696 LEU ASN VAL ILE TYR ILE ASP VAL ASN ALA VAL GLU ASP SEQRES 18 A 696 PHE HIS LEU SER GLU GLU ALA GLN ALA TRP TRP GLN LEU SEQRES 19 A 696 PRO THR THR GLN GLN THR LEU GLN GLN ALA ARG ASP ALA SEQRES 20 A 696 ASP TRP VAL ASP TYR SER THR VAL THR ALA LEU LYS MSE SEQRES 21 A 696 THR ALA LEU ARG MSE ALA TRP LYS GLY PHE ALA GLN ARG SEQRES 22 A 696 ASP ASP GLU GLN MSE ALA ALA PHE ARG GLN PHE VAL ALA SEQRES 23 A 696 GLU GLN GLY ASP SER LEU PHE TRP GLN ALA ALA PHE ASP SEQRES 24 A 696 ALA LEU HIS ALA GLN GLN VAL LYS GLU ASP GLU MSE ARG SEQRES 25 A 696 TRP GLY TRP PRO ALA TRP PRO GLU MSE TYR GLN ASN VAL SEQRES 26 A 696 ASP SER PRO GLU VAL ARG GLN PHE CYS GLU GLU HIS ARG SEQRES 27 A 696 ASP ASP VAL ASP PHE TYR LEU TRP LEU GLN TRP LEU ALA SEQRES 28 A 696 TYR SER GLN PHE ALA ALA CYS TRP GLU ILE SER GLN GLY SEQRES 29 A 696 TYR GLU MSE PRO ILE GLY LEU TYR ARG ASP LEU ALA VAL SEQRES 30 A 696 GLY VAL ALA GLU GLY GLY ALA GLU THR TRP CYS ASP ARG SEQRES 31 A 696 GLU LEU TYR CYS LEU LYS ALA SER VAL GLY ALA PRO PRO SEQRES 32 A 696 ASP ILE LEU GLY PRO LEU GLY GLN ASN TRP GLY LEU PRO SEQRES 33 A 696 PRO MSE ASP PRO HIS ILE ILE THR ALA ARG ALA TYR GLU SEQRES 34 A 696 PRO PHE ILE GLU LEU LEU ARG ALA ASN MSE GLN ASN CYS SEQRES 35 A 696 GLY ALA LEU ARG ILE ASP HIS VAL MSE SER MSE LEU ARG SEQRES 36 A 696 LEU TRP TRP ILE PRO TYR GLY GLU THR ALA ASP GLN GLY SEQRES 37 A 696 ALA TYR VAL HIS TYR PRO VAL ASP ASP LEU LEU SER ILE SEQRES 38 A 696 LEU ALA LEU GLU SER LYS ARG HIS ARG CYS MSE VAL ILE SEQRES 39 A 696 GLY GLU ASP LEU GLY THR VAL PRO VAL GLU ILE VAL GLY SEQRES 40 A 696 LYS LEU ARG SER SER GLY VAL TYR SER TYR LYS VAL LEU SEQRES 41 A 696 TYR PHE GLU ASN ASP HIS GLU LYS THR PHE ARG ALA PRO SEQRES 42 A 696 LYS ALA TYR PRO GLU GLN SER MSE ALA VAL ALA ALA THR SEQRES 43 A 696 HIS ASP LEU PRO THR LEU ARG GLY TYR TRP GLU CYS GLY SEQRES 44 A 696 ASP LEU THR LEU GLY LYS THR LEU GLY LEU TYR PRO ASP SEQRES 45 A 696 GLU VAL VAL LEU ARG GLY LEU TYR GLN ASP ARG GLU LEU SEQRES 46 A 696 ALA LYS GLN GLY LEU LEU ASP ALA LEU HIS LYS TYR GLY SEQRES 47 A 696 CYS LEU PRO LYS ARG ALA GLY HIS LYS ALA SER LEU MSE SEQRES 48 A 696 SER MSE THR PRO THR LEU ASN ARG GLY LEU GLN ARG TYR SEQRES 49 A 696 ILE ALA ASP SER ASN SER ALA LEU LEU GLY LEU GLN PRO SEQRES 50 A 696 GLU ASP TRP LEU ASP MSE ALA GLU PRO VAL ASN ILE PRO SEQRES 51 A 696 GLY THR SER TYR GLN TYR LYS ASN TRP ARG ARG LYS LEU SEQRES 52 A 696 SER ALA THR LEU GLU SER MSE PHE ALA ASP ASP GLY VAL SEQRES 53 A 696 ASN LYS LEU LEU LYS ASP LEU ASP ARG ARG ARG ARG SER SEQRES 54 A 696 ALA HIS HIS HIS HIS HIS HIS MODRES 4S3R MSE A 41 MET SELENOMETHIONINE MODRES 4S3R MSE A 58 MET SELENOMETHIONINE MODRES 4S3R MSE A 66 MET SELENOMETHIONINE MODRES 4S3R MSE A 68 MET SELENOMETHIONINE MODRES 4S3R MSE A 170 MET SELENOMETHIONINE MODRES 4S3R MSE A 260 MET SELENOMETHIONINE MODRES 4S3R MSE A 265 MET SELENOMETHIONINE MODRES 4S3R MSE A 278 MET SELENOMETHIONINE MODRES 4S3R MSE A 311 MET SELENOMETHIONINE MODRES 4S3R MSE A 321 MET SELENOMETHIONINE MODRES 4S3R MSE A 367 MET SELENOMETHIONINE MODRES 4S3R MSE A 418 MET SELENOMETHIONINE MODRES 4S3R MSE A 439 MET SELENOMETHIONINE MODRES 4S3R MSE A 451 MET SELENOMETHIONINE MODRES 4S3R MSE A 453 MET SELENOMETHIONINE MODRES 4S3R MSE A 492 MET SELENOMETHIONINE MODRES 4S3R MSE A 541 MET SELENOMETHIONINE MODRES 4S3R MSE A 611 MET SELENOMETHIONINE MODRES 4S3R MSE A 613 MET SELENOMETHIONINE MODRES 4S3R MSE A 643 MET SELENOMETHIONINE MODRES 4S3R MSE A 670 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 58 8 HET MSE A 66 8 HET MSE A 68 8 HET MSE A 170 8 HET MSE A 260 8 HET MSE A 265 8 HET MSE A 278 8 HET MSE A 311 8 HET MSE A 321 8 HET MSE A 367 8 HET MSE A 418 8 HET MSE A 439 8 HET MSE A 451 8 HET MSE A 453 8 HET MSE A 492 8 HET MSE A 541 8 HET MSE A 611 8 HET MSE A 613 8 HET MSE A 643 8 HET MSE A 670 8 HET 7SA A 701 76 HET EDO A 708 4 HETNAM MSE SELENOMETHIONINE HETNAM 7SA ACARBOSE DERIVED HEPTASACCHARIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN 7SA (2R,3R,4R,5S,6R)-6-(HYDROXYMETHYL)-5-[(2R,3R,4R,5S,6R)- HETSYN 2 7SA 6-(HYDROXYMETHYL)-5-[(2R,3R,4S,5S,6R)-5-[[(1S,4R,5R, HETSYN 3 7SA 6S)-3-(HYDROXYMETHYL)-4-[(2S,3R,4R,5S,6R)-6- HETSYN 4 7SA (HYDROXYMETHYL)-5-[(2R,3R,4S,5S,6R)-5-[[(1S,4R,5S,6S)- HETSYN 5 7SA 3-(HYDROXYMETHYL)-4,5,6-TRIS(OXIDANYL)CYCLOHEX-2-EN-1- HETSYN 6 7SA YL]AMINO]-6-METHYL-3,4-BIS(OXIDANYL)OXAN-2-YL]OXY-3,4- HETSYN 7 7SA BIS(OXIDANYL)OXAN-2-YL]OXY-5,6-BIS(OXIDANYL)CYCLOHEX- HETSYN 8 7SA 2-EN-1-YL]AMINO]-6-METHYL-3,4-BIS(OXIDANYL)OXAN-2- HETSYN 9 7SA YL]OXY-3,4-BIS(OXIDANYL)OXAN-2-YL]OXY-OXANE-2,3,4- HETSYN 10 7SA TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 21(C5 H11 N O2 SE) FORMUL 2 7SA C44 H74 N2 O30 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *226(H2 O) HELIX 1 1 SER A 3 ALA A 13 1 11 HELIX 2 2 SER A 30 MSE A 41 1 12 HELIX 3 3 PRO A 134 ASN A 139 1 6 HELIX 4 4 GLN A 149 LEU A 153 5 5 HELIX 5 5 ASP A 163 ARG A 177 1 15 HELIX 6 6 VAL A 211 ILE A 214 5 4 HELIX 7 7 ASP A 215 ALA A 218 5 4 HELIX 8 8 VAL A 219 SER A 225 1 7 HELIX 9 9 SER A 225 GLN A 233 1 9 HELIX 10 10 LEU A 234 ALA A 247 1 14 HELIX 11 11 ASP A 251 ALA A 271 1 21 HELIX 12 12 ASP A 275 ASP A 309 1 35 HELIX 13 13 GLY A 314 TRP A 318 5 5 HELIX 14 14 PRO A 319 ASN A 324 1 6 HELIX 15 15 SER A 327 HIS A 337 1 11 HELIX 16 16 HIS A 337 TYR A 365 1 29 HELIX 17 17 GLY A 383 ASP A 389 1 7 HELIX 18 18 ARG A 390 TYR A 393 5 4 HELIX 19 19 ASP A 419 ARG A 426 1 8 HELIX 20 20 TYR A 428 MSE A 439 1 12 HELIX 21 21 HIS A 449 MSE A 453 5 5 HELIX 22 22 THR A 464 GLY A 468 5 5 HELIX 23 23 PRO A 474 ARG A 490 1 17 HELIX 24 24 PRO A 502 SER A 512 1 11 HELIX 25 25 TYR A 521 GLU A 523 5 3 HELIX 26 26 ALA A 532 TYR A 536 5 5 HELIX 27 27 THR A 551 CYS A 558 1 8 HELIX 28 28 CYS A 558 LEU A 567 1 10 HELIX 29 29 ASP A 572 TYR A 597 1 26 HELIX 30 30 LYS A 607 MSE A 611 5 5 HELIX 31 31 THR A 614 ASP A 627 1 14 HELIX 32 32 GLN A 636 LEU A 641 1 6 HELIX 33 33 THR A 666 ASP A 673 1 8 HELIX 34 34 ASP A 673 ALA A 690 1 18 SHEET 1 A 2 ASN A 18 ILE A 20 0 SHEET 2 A 2 PRO A 26 SER A 28 -1 O GLN A 27 N TYR A 19 SHEET 1 B 5 VAL A 57 THR A 61 0 SHEET 2 B 5 GLN A 118 ALA A 127 1 O ILE A 125 N TYR A 60 SHEET 3 B 5 GLY A 107 GLN A 115 -1 N LEU A 111 O CYS A 122 SHEET 4 B 5 GLU A 75 THR A 81 -1 N THR A 81 O THR A 110 SHEET 5 B 5 GLN A 87 THR A 93 -1 O VAL A 92 N TYR A 76 SHEET 1 C 2 PRO A 67 VAL A 69 0 SHEET 2 C 2 ALA A 97 ASN A 99 -1 O PHE A 98 N MSE A 68 SHEET 1 D 9 LEU A 143 VAL A 148 0 SHEET 2 D 9 PHE A 181 LEU A 184 1 O GLY A 183 N ALA A 146 SHEET 3 D 9 GLY A 370 LEU A 375 1 O TYR A 372 N LEU A 184 SHEET 4 D 9 ALA A 444 ILE A 447 1 O ARG A 446 N ARG A 373 SHEET 5 D 9 MSE A 492 GLY A 495 1 O ILE A 494 N ILE A 447 SHEET 6 D 9 TYR A 515 VAL A 519 1 O TYR A 515 N GLY A 495 SHEET 7 D 9 SER A 540 VAL A 543 1 O MSE A 541 N SER A 516 SHEET 8 D 9 LEU A 632 LEU A 635 1 O LEU A 632 N ALA A 542 SHEET 9 D 9 LEU A 143 VAL A 148 1 N CYS A 147 O LEU A 635 SHEET 1 E 2 HIS A 188 ALA A 189 0 SHEET 2 E 2 SER A 205 LEU A 209 -1 O TRP A 208 N ALA A 189 SHEET 1 F 4 GLN A 411 LEU A 415 0 SHEET 2 F 4 ALA A 397 ALA A 401 -1 N VAL A 399 O LEU A 415 SHEET 3 F 4 ARG A 455 PRO A 460 -1 O ILE A 459 N SER A 398 SHEET 4 F 4 ALA A 469 HIS A 472 -1 O ALA A 469 N TRP A 458 LINK C ALA A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N HIS A 42 1555 1555 1.33 LINK C VAL A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N VAL A 59 1555 1555 1.33 LINK C LYS A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N PRO A 67 1555 1555 1.34 LINK C PRO A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N VAL A 69 1555 1555 1.33 LINK C ALA A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N LEU A 171 1555 1555 1.34 LINK C LYS A 259 N MSE A 260 1555 1555 1.34 LINK C MSE A 260 N THR A 261 1555 1555 1.32 LINK C ARG A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N ALA A 266 1555 1555 1.33 LINK C GLN A 277 N MSE A 278 1555 1555 1.33 LINK C MSE A 278 N ALA A 279 1555 1555 1.33 LINK C GLU A 310 N MSE A 311 1555 1555 1.34 LINK C MSE A 311 N ARG A 312 1555 1555 1.34 LINK C GLU A 320 N MSE A 321 1555 1555 1.32 LINK C MSE A 321 N TYR A 322 1555 1555 1.33 LINK C GLU A 366 N MSE A 367 1555 1555 1.33 LINK C MSE A 367 N PRO A 368 1555 1555 1.35 LINK C PRO A 417 N MSE A 418 1555 1555 1.33 LINK C MSE A 418 N ASP A 419 1555 1555 1.32 LINK C ASN A 438 N MSE A 439 1555 1555 1.33 LINK C MSE A 439 N GLN A 440 1555 1555 1.33 LINK C VAL A 450 N MSE A 451 1555 1555 1.33 LINK C MSE A 451 N SER A 452 1555 1555 1.34 LINK C SER A 452 N MSE A 453 1555 1555 1.32 LINK C MSE A 453 N LEU A 454 1555 1555 1.33 LINK C CYS A 491 N MSE A 492 1555 1555 1.33 LINK C MSE A 492 N VAL A 493 1555 1555 1.32 LINK C SER A 540 N MSE A 541 1555 1555 1.33 LINK C MSE A 541 N ALA A 542 1555 1555 1.33 LINK C LEU A 610 N MSE A 611 1555 1555 1.33 LINK C MSE A 611 N SER A 612 1555 1555 1.33 LINK C SER A 612 N MSE A 613 1555 1555 1.32 LINK C MSE A 613 N THR A 614 1555 1555 1.33 LINK C ASP A 642 N MSE A 643 1555 1555 1.32 LINK C MSE A 643 N ALA A 644 1555 1555 1.33 LINK C SER A 669 N MSE A 670 1555 1555 1.33 LINK C MSE A 670 N PHE A 671 1555 1555 1.33 SITE 1 AC1 33 SER A 199 TYR A 201 SER A 202 THR A 236 SITE 2 AC1 33 GLU A 381 ASP A 404 ILE A 405 LEU A 406 SITE 3 AC1 33 GLN A 411 ASN A 412 TRP A 413 GLY A 414 SITE 4 AC1 33 ARG A 446 ASP A 448 HIS A 449 MSE A 451 SITE 5 AC1 33 GLU A 496 LEU A 498 GLY A 499 PHE A 522 SITE 6 AC1 33 HIS A 547 ASP A 548 ASN A 648 PRO A 650 SITE 7 AC1 33 GLY A 651 THR A 652 HOH A 868 HOH A 876 SITE 8 AC1 33 HOH A 899 HOH A 920 HOH A 921 HOH A 933 SITE 9 AC1 33 HOH A1016 SITE 1 AC2 5 GLY A 165 LYS A 168 ASP A 215 GLN A 354 SITE 2 AC2 5 HOH A 993 CRYST1 65.000 75.830 163.850 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006103 0.00000