HEADER OXIDOREDUCTASE 27-MAY-14 4TKM TITLE CRYSTAL STRUCTURE OF NADH-DEPENDENT REDUCTASE A1-R' COMPLEXED WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-DEPENDENT REDUCTASE FOR 4-DEOXY-L-ERYTHRO-5- COMPND 3 HEXOSEULOSE URONATE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. A1; SOURCE 3 ORGANISM_TAXID: 90322; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA/BETA/ALPHA, ROSSMANN-FOLD, ALGINATE METABOLISM, SHORT-CHAIN KEYWDS 2 DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO REVDAT 4 08-NOV-23 4TKM 1 REMARK REVDAT 3 22-JAN-20 4TKM 1 SOURCE JRNL REMARK REVDAT 2 10-DEC-14 4TKM 1 JRNL REVDAT 1 25-JUN-14 4TKM 0 JRNL AUTH R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO JRNL TITL STRUCTURE-BASED CONVERSION OF THE COENZYME REQUIREMENT OF A JRNL TITL 2 SHORT-CHAIN DEHYDROGENASE/REDUCTASE INVOLVED IN BACTERIAL JRNL TITL 3 ALGINATE METABOLISM. JRNL REF J.BIOL.CHEM. V. 289 33198 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25288804 JRNL DOI 10.1074/JBC.M114.585661 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -4.29000 REMARK 3 B12 (A**2) : 1.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.651 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3711 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3537 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5025 ; 1.412 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8090 ; 0.782 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;39.916 ;23.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;14.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4234 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 871 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 2.972 ; 4.855 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1927 ; 2.971 ; 4.856 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2403 ; 4.563 ; 7.272 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2404 ; 4.562 ; 7.272 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1783 ; 2.967 ; 5.244 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1764 ; 2.871 ; 5.162 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2592 ; 4.596 ; 7.651 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4380 ;12.047 ;39.402 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4381 ;12.046 ;39.411 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 33.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3AFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, AMMONIUM SULPHATE, 4-(2 REMARK 280 -HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID, NAD, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.60700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.21400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.21400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.60700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -206.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 198 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 PHE A 201 REMARK 465 HIS A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 LYS A 205 REMARK 465 SER A 206 REMARK 465 ASP A 207 REMARK 465 GLU A 208 REMARK 465 LEU A 209 REMARK 465 LYS A 210 REMARK 465 THR A 211 REMARK 465 ARG A 212 REMARK 465 ILE A 213 REMARK 465 VAL B 197 REMARK 465 ASP B 198 REMARK 465 THR B 199 REMARK 465 ALA B 200 REMARK 465 PHE B 201 REMARK 465 HIS B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 LYS B 205 REMARK 465 SER B 206 REMARK 465 ASP B 207 REMARK 465 GLU B 208 REMARK 465 LEU B 209 REMARK 465 LYS B 210 REMARK 465 THR B 211 REMARK 465 ARG B 212 REMARK 465 ILE B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 80 O PHE A 83 1.79 REMARK 500 O PRO A 194 O VAL A 251 2.15 REMARK 500 OG SER B 38 O2B NAD B 301 2.17 REMARK 500 O VAL A 179 OG1 THR A 183 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 4.87 -69.44 REMARK 500 THR A 141 -110.77 -79.75 REMARK 500 SER A 241 31.28 -144.12 REMARK 500 ALA B 64 144.17 -176.09 REMARK 500 THR B 141 -131.00 -102.37 REMARK 500 ASN B 252 19.82 -152.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TKL RELATED DB: PDB DBREF 4TKM A 1 258 PDB 4TKM 4TKM 1 258 DBREF 4TKM B 1 258 PDB 4TKM 4TKM 1 258 SEQRES 1 A 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 A 258 GLY SER THR GLU GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 A 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU ASN SER HIS SEQRES 4 A 258 VAL ASP PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 A 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 A 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 A 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 A 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 A 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 A 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 A 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 A 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 A 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 A 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 A 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 A 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 A 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 A 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 A 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 A 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO SEQRES 1 B 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 B 258 GLY SER THR GLU GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 B 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU ASN SER HIS SEQRES 4 B 258 VAL ASP PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 B 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 B 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 B 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 B 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 B 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 B 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 B 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 B 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 B 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 B 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 B 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 B 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 B 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 B 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 B 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 B 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET NAD B 301 44 HET SO4 B 302 5 HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 SO4 5(O4 S 2-) FORMUL 7 NAD C21 H27 N7 O14 P2 FORMUL 9 HOH *81(H2 O) HELIX 1 AA1 PHE A 2 LYS A 6 5 5 HELIX 2 AA2 GLU A 17 TYR A 30 1 14 HELIX 3 AA3 ASP A 44 GLY A 56 1 13 HELIX 4 AA4 LYS A 68 PHE A 83 1 16 HELIX 5 AA5 ASN A 101 ILE A 105 5 5 HELIX 6 AA6 ASP A 106 GLY A 118 1 13 HELIX 7 AA7 GLY A 118 GLY A 140 1 23 HELIX 8 AA8 ILE A 151 GLY A 156 1 6 HELIX 9 AA9 ALA A 161 THR A 183 1 23 HELIX 10 AB1 THR A 224 SER A 237 1 14 HELIX 11 AB2 SER A 237 GLY A 242 1 6 HELIX 12 AB3 PHE B 2 LYS B 6 5 5 HELIX 13 AB4 GLU B 17 ARG B 29 1 13 HELIX 14 AB5 ASP B 44 GLY B 56 1 13 HELIX 15 AB6 LYS B 68 ASP B 84 1 17 HELIX 16 AB7 ASN B 101 ILE B 105 5 5 HELIX 17 AB8 ASP B 106 GLY B 118 1 13 HELIX 18 AB9 GLY B 118 GLY B 140 1 23 HELIX 19 AC1 ILE B 151 GLY B 156 1 6 HELIX 20 AC2 ALA B 161 THR B 183 1 23 HELIX 21 AC3 THR B 224 SER B 237 1 14 HELIX 22 AC4 SER B 237 GLY B 242 1 6 SHEET 1 AA1 7 ASP A 58 ARG A 63 0 SHEET 2 AA1 7 VAL A 33 SER A 38 1 N LEU A 36 O ALA A 60 SHEET 3 AA1 7 ARG A 9 ILE A 12 1 N ILE A 10 O VAL A 33 SHEET 4 AA1 7 VAL A 88 ASN A 91 1 O ILE A 90 N LEU A 11 SHEET 5 AA1 7 SER A 143 THR A 148 1 O THR A 148 N ASN A 91 SHEET 6 AA1 7 ILE A 187 ALA A 193 1 O ASN A 190 N VAL A 145 SHEET 7 AA1 7 GLN A 247 ASP A 250 1 O LEU A 249 N ILE A 191 SHEET 1 AA2 7 ASP B 58 ARG B 63 0 SHEET 2 AA2 7 VAL B 33 SER B 38 1 N LEU B 36 O ALA B 60 SHEET 3 AA2 7 ARG B 9 ILE B 12 1 N ILE B 12 O GLY B 35 SHEET 4 AA2 7 VAL B 88 ASN B 91 1 N VAL B 88 O ARG B 9 SHEET 5 AA2 7 SER B 143 THR B 148 1 O ILE B 146 N ASN B 91 SHEET 6 AA2 7 ILE B 187 PRO B 194 1 O ARG B 188 N VAL B 145 SHEET 7 AA2 7 GLN B 247 VAL B 251 1 O LEU B 249 N ILE B 191 SITE 1 AC1 4 HIS A 39 GLY A 98 ARG A 99 SO4 A 302 SITE 1 AC2 5 HIS A 39 GLY A 98 ARG A 99 SO4 A 301 SITE 2 AC2 5 SO4 A 304 SITE 1 AC3 5 GLU A 17 GLY A 18 ILE A 19 GLY A 20 SITE 2 AC3 5 ASN A 92 SITE 1 AC4 4 GLY A 14 SER A 38 HIS A 39 SO4 A 302 SITE 1 AC5 21 GLY B 14 THR B 16 GLU B 17 ILE B 19 SITE 2 AC5 21 ASN B 37 SER B 38 HIS B 39 ALA B 64 SITE 3 AC5 21 ASP B 65 ILE B 66 ASN B 92 GLY B 94 SITE 4 AC5 21 GLY B 95 THR B 148 GLY B 149 SER B 150 SITE 5 AC5 21 TYR B 164 LYS B 168 GLY B 195 THR B 196 SITE 6 AC5 21 HOH B 429 SITE 1 AC6 8 ILE B 151 ALA B 193 PRO B 194 GLY B 195 SITE 2 AC6 8 ASP B 250 VAL B 251 ASN B 252 ILE B 256 CRYST1 87.898 87.898 139.821 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011377 0.006568 0.000000 0.00000 SCALE2 0.000000 0.013137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007152 0.00000