HEADER HYDROLASE/HYDROLASE INHIBITOR 01-JUN-14 4TMF TITLE CRYSTAL STRUCTURE OF HUMAN CD38 IN COMPLEX WITH HYDROLYSED COMPOUND TITLE 2 JMS713 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE/CYCLIC ADP-RIBOSE HYDROLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTO DOMAIN; COMPND 5 SYNONYM: 2'-PHOSPHO-ADP-RIBOSYL CYCLASE,2'-PHOSPHO-ADP-RIBOSYL COMPND 6 CYCLASE/2'-PHOSPHO-CYCLIC-ADP-RIBOSE TRANSFERASE,2'-PHOSPHO-CYCLIC- COMPND 7 ADP-RIBOSE TRANSFERASE,ADP-RIBOSYL CYCLASE 1,ADPRC 1,CYCLIC ADP- COMPND 8 RIBOSE HYDROLASE 1,CADPR HYDROLASE 1,T10; COMPND 9 EC: 3.2.2.6,2.4.99.20; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS CD38, ADP-RIBOSYL CYCLASE, CYCLIC ADP-RIBOSE, X-CRYSTALLOGRAPHY, KEYWDS 2 CALCIUM SIGNALING, INHIBITORY COMPOUND, JMS713, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,J.SWARBRICK,B.POTTER,Q.HAO REVDAT 4 27-SEP-23 4TMF 1 HETSYN REVDAT 3 29-JUL-20 4TMF 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 27-SEP-17 4TMF 1 SOURCE KEYWDS JRNL REMARK REVDAT 1 13-MAY-15 4TMF 0 JRNL AUTH J.M.SWARBRICK,R.GRAEFF,H.ZHANG,M.P.THOMAS,Q.HAO,B.V.POTTER JRNL TITL CYCLIC ADENOSINE 5'-DIPHOSPHATE RIBOSE ANALOGS WITHOUT A JRNL TITL 2 "SOUTHERN" RIBOSE INHIBIT ADP-RIBOSYL CYCLASE-HYDROLASE JRNL TITL 3 CD38. JRNL REF J.MED.CHEM. V. 57 8517 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25226087 JRNL DOI 10.1021/JM501037U REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 31950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2141 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.45000 REMARK 3 B22 (A**2) : 2.67000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : -2.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 1.53000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.297 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4126 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3809 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5609 ; 1.426 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8779 ; 1.127 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;39.842 ;24.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 709 ;16.171 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4550 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 1.520 ; 2.797 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1939 ; 1.520 ; 2.797 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2418 ; 2.253 ; 4.188 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 48 290 B 48 290 14096 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4910 -14.6510 -5.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.1472 REMARK 3 T33: 0.5411 T12: 0.0171 REMARK 3 T13: -0.0299 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 11.2312 L22: 2.3994 REMARK 3 L33: 2.7035 L12: 0.1185 REMARK 3 L13: 0.7763 L23: -0.0996 REMARK 3 S TENSOR REMARK 3 S11: 0.2086 S12: 0.5013 S13: -1.4720 REMARK 3 S21: -0.0860 S22: -0.0238 S23: 0.2764 REMARK 3 S31: 0.2511 S32: -0.2700 S33: -0.1849 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6780 2.8590 1.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1928 REMARK 3 T33: 0.2114 T12: 0.0634 REMARK 3 T13: 0.0523 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 7.5321 L22: 6.6347 REMARK 3 L33: 7.3042 L12: 1.2250 REMARK 3 L13: 1.5158 L23: -2.2718 REMARK 3 S TENSOR REMARK 3 S11: 0.2364 S12: -0.2611 S13: -0.3516 REMARK 3 S21: 0.4679 S22: -0.0764 S23: 0.2499 REMARK 3 S31: 0.4009 S32: 0.1644 S33: -0.1600 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4440 -8.4440 -1.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1421 REMARK 3 T33: 0.2166 T12: -0.0115 REMARK 3 T13: 0.0047 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 9.8442 L22: 4.0530 REMARK 3 L33: 2.7142 L12: -2.4073 REMARK 3 L13: 1.1907 L23: -0.9363 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.2023 S13: -0.7304 REMARK 3 S21: 0.1437 S22: 0.0292 S23: -0.0227 REMARK 3 S31: 0.1224 S32: 0.0106 S33: -0.0719 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5120 13.0800 1.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.2150 REMARK 3 T33: 0.2322 T12: 0.0106 REMARK 3 T13: 0.0022 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.7958 L22: 3.6875 REMARK 3 L33: 3.8003 L12: 1.4187 REMARK 3 L13: -1.1008 L23: -0.2084 REMARK 3 S TENSOR REMARK 3 S11: 0.2745 S12: -0.3903 S13: 0.4830 REMARK 3 S21: 0.6215 S22: -0.1532 S23: 0.0500 REMARK 3 S31: -0.1790 S32: -0.0710 S33: -0.1214 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4830 19.9940 -22.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.1577 REMARK 3 T33: 0.2701 T12: 0.0256 REMARK 3 T13: 0.0060 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 5.3260 L22: 3.2698 REMARK 3 L33: 4.0437 L12: 0.8049 REMARK 3 L13: -2.0190 L23: -0.6549 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 0.4270 S13: 0.6176 REMARK 3 S21: -0.2909 S22: 0.0854 S23: 0.1214 REMARK 3 S31: -0.6443 S32: -0.0665 S33: -0.1657 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0610 4.7120 -37.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.5415 T22: 0.2969 REMARK 3 T33: 0.2579 T12: -0.0496 REMARK 3 T13: -0.0152 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 12.7855 L22: 5.3988 REMARK 3 L33: 13.1831 L12: 1.3907 REMARK 3 L13: -2.9713 L23: -2.7831 REMARK 3 S TENSOR REMARK 3 S11: -0.2479 S12: 0.1929 S13: 0.2442 REMARK 3 S21: -0.0820 S22: 0.0946 S23: -0.7226 REMARK 3 S31: 1.0515 S32: 0.1249 S33: 0.1533 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1880 12.7000 -21.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1311 REMARK 3 T33: 0.1913 T12: 0.0362 REMARK 3 T13: -0.0106 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 4.7456 L22: 2.4353 REMARK 3 L33: 7.5471 L12: 0.8022 REMARK 3 L13: -2.3944 L23: -1.5772 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.1188 S13: 0.1139 REMARK 3 S21: -0.2528 S22: 0.1621 S23: 0.1541 REMARK 3 S31: 0.0828 S32: -0.3046 S33: -0.0737 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6000 -4.6040 -37.6960 REMARK 3 T TENSOR REMARK 3 T11: 1.0437 T22: 0.5769 REMARK 3 T33: 0.3389 T12: -0.3225 REMARK 3 T13: -0.0304 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 3.1449 L22: 6.0133 REMARK 3 L33: 6.2193 L12: 0.4497 REMARK 3 L13: -2.0771 L23: 0.3253 REMARK 3 S TENSOR REMARK 3 S11: -0.3980 S12: 0.4383 S13: -0.5035 REMARK 3 S21: 0.1793 S22: 0.1435 S23: -0.1529 REMARK 3 S31: 1.7964 S32: -0.6079 S33: 0.2546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4TMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31966 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YH3 REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH4.0, 0.2M REMARK 280 AMMONIUM ACETATE, 3% ISOPROPANOL, 15% PEG10000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. AND THERE ARE 2 REMARK 300 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAIN A AND CHAIN B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 44 REMARK 465 PHE A 45 REMARK 465 TRP A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 246 REMARK 465 ARG A 247 REMARK 465 GLU A 248 REMARK 465 ASP A 249 REMARK 465 SER A 250 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 ARG B 247 REMARK 465 GLU B 248 REMARK 465 ASP B 249 REMARK 465 SER B 250 REMARK 465 GLU B 292 REMARK 465 ASP B 293 REMARK 465 SER B 294 REMARK 465 SER B 295 REMARK 465 CYS B 296 REMARK 465 THR B 297 REMARK 465 SER B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 CYS A 173 CA - CB - SG ANGL. DEV. = -27.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -1.03 69.47 REMARK 500 ILE A 128 48.17 -143.56 REMARK 500 ASP A 179 -67.56 -108.86 REMARK 500 ASN A 182 54.58 -90.18 REMARK 500 ASP A 202 -121.45 64.58 REMARK 500 SER A 295 4.90 -56.87 REMARK 500 HIS B 74 73.68 -114.38 REMARK 500 SER B 95 -2.18 69.92 REMARK 500 ILE B 128 49.40 -143.69 REMARK 500 ASP B 179 -69.18 -109.78 REMARK 500 CYS B 180 149.44 -170.67 REMARK 500 ASN B 182 57.06 -92.31 REMARK 500 ASP B 202 -122.99 68.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 4TMF A 50 300 UNP P28907 CD38_HUMAN 50 300 DBREF 4TMF B 50 300 UNP P28907 CD38_HUMAN 50 300 SEQADV 4TMF GLU A 44 UNP P28907 EXPRESSION TAG SEQADV 4TMF PHE A 45 UNP P28907 EXPRESSION TAG SEQADV 4TMF TRP A 46 UNP P28907 EXPRESSION TAG SEQADV 4TMF ARG A 47 UNP P28907 EXPRESSION TAG SEQADV 4TMF GLN A 48 UNP P28907 EXPRESSION TAG SEQADV 4TMF THR A 49 UNP P28907 EXPRESSION TAG SEQADV 4TMF ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 4TMF ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 4TMF ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 4TMF ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 4TMF GLU B 44 UNP P28907 EXPRESSION TAG SEQADV 4TMF PHE B 45 UNP P28907 EXPRESSION TAG SEQADV 4TMF TRP B 46 UNP P28907 EXPRESSION TAG SEQADV 4TMF ARG B 47 UNP P28907 EXPRESSION TAG SEQADV 4TMF GLN B 48 UNP P28907 EXPRESSION TAG SEQADV 4TMF THR B 49 UNP P28907 EXPRESSION TAG SEQADV 4TMF ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 4TMF ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 4TMF ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 4TMF ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQRES 1 A 257 GLU PHE TRP ARG GLN THR TRP SER GLY PRO GLY THR THR SEQRES 2 A 257 LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL LYS SEQRES 3 A 257 TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP CYS SEQRES 4 A 257 GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SER SEQRES 5 A 257 LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN PRO SEQRES 6 A 257 LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN LYS SEQRES 7 A 257 ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS GLN SEQRES 8 A 257 PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU ASP SEQRES 9 A 257 THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP CYS SEQRES 10 A 257 GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER CYS SEQRES 11 A 257 PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SER SEQRES 12 A 257 VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU ALA SEQRES 13 A 257 ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER ARG SEQRES 14 A 257 SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER VAL SEQRES 15 A 257 GLU VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR LEU SEQRES 16 A 257 GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER ARG SEQRES 17 A 257 ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SER SEQRES 18 A 257 ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS ASN SEQRES 19 A 257 ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS ASN SEQRES 20 A 257 PRO GLU ASP SER SER CYS THR SER GLU ILE SEQRES 1 B 257 GLU PHE TRP ARG GLN THR TRP SER GLY PRO GLY THR THR SEQRES 2 B 257 LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL LYS SEQRES 3 B 257 TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP CYS SEQRES 4 B 257 GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SER SEQRES 5 B 257 LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN PRO SEQRES 6 B 257 LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN LYS SEQRES 7 B 257 ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS GLN SEQRES 8 B 257 PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU ASP SEQRES 9 B 257 THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP CYS SEQRES 10 B 257 GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER CYS SEQRES 11 B 257 PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SER SEQRES 12 B 257 VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU ALA SEQRES 13 B 257 ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER ARG SEQRES 14 B 257 SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER VAL SEQRES 15 B 257 GLU VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR LEU SEQRES 16 B 257 GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER ARG SEQRES 17 B 257 ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SER SEQRES 18 B 257 ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS ASN SEQRES 19 B 257 ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS ASN SEQRES 20 B 257 PRO GLU ASP SER SER CYS THR SER GLU ILE HET JS2 A 401 33 HET JS2 B 401 33 HETNAM JS2 5-O-[(R)-{[(S)-[4-(8-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN- HETNAM 2 JS2 9-YL)BUTOXY](HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETNAM 3 JS2 PHOSPHORYL]-ALPHA-D- RIBOFURANOSE HETSYN JS2 5-O-[(R)-{[(S)-[4-(8-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN- HETSYN 2 JS2 9-YL)BUTOXY](HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETSYN 3 JS2 PHOSPHORYL]-ALPHA-D- RIBOSE; 5-O-[(R)-{[(S)-[4-(8- HETSYN 4 JS2 AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL) HETSYN 5 JS2 BUTOXY](HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]-D- HETSYN 6 JS2 RIBOSE; 5-O-[(R)-{[(S)-[4-(8-AMINO-6-OXO-1,6-DIHYDRO- HETSYN 7 JS2 9H-PURIN-9-YL)BUTOXY](HYDROXY) HETSYN 8 JS2 PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]-RIBOSE FORMUL 3 JS2 2(C14 H23 N5 O12 P2) FORMUL 5 HOH *80(H2 O) HELIX 1 AA1 ARG A 58 HIS A 74 1 17 HELIX 2 AA2 PRO A 75 ARG A 78 5 4 HELIX 3 AA3 ASP A 81 ILE A 94 1 14 HELIX 4 AA4 GLU A 103 ASP A 105 5 3 HELIX 5 AA5 TYR A 106 GLY A 113 1 8 HELIX 6 AA6 PRO A 118 LYS A 121 5 4 HELIX 7 AA7 ILE A 128 GLN A 139 1 12 HELIX 8 AA8 THR A 144 ASP A 147 5 4 HELIX 9 AA9 THR A 148 ASP A 155 1 8 HELIX 10 AB1 ASN A 183 ALA A 199 1 17 HELIX 11 AB2 SER A 220 VAL A 225 1 6 HELIX 12 AB3 VAL A 225 LEU A 230 1 6 HELIX 13 AB4 ASP A 252 GLN A 255 5 4 HELIX 14 AB5 ASP A 256 ARG A 269 1 14 HELIX 15 AB6 ARG A 280 ASN A 290 1 11 HELIX 16 AB7 ARG B 58 HIS B 74 1 17 HELIX 17 AB8 ASP B 81 ILE B 94 1 14 HELIX 18 AB9 GLU B 103 ASP B 105 5 3 HELIX 19 AC1 TYR B 106 GLY B 113 1 8 HELIX 20 AC2 PRO B 118 LYS B 121 5 4 HELIX 21 AC3 ILE B 128 GLN B 139 1 12 HELIX 22 AC4 THR B 144 ASP B 147 5 4 HELIX 23 AC5 THR B 148 ASP B 155 1 8 HELIX 24 AC6 ASN B 183 ALA B 199 1 17 HELIX 25 AC7 SER B 220 VAL B 225 1 6 HELIX 26 AC8 VAL B 225 LEU B 230 1 6 HELIX 27 AC9 ASP B 252 GLN B 255 5 4 HELIX 28 AD1 ASP B 256 ARG B 269 1 14 HELIX 29 AD2 ARG B 280 ASN B 290 1 11 SHEET 1 AA1 2 GLY A 52 PRO A 53 0 SHEET 2 AA1 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 AA2 4 LEU A 123 SER A 126 0 SHEET 2 AA2 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 AA2 4 VAL A 235 ILE A 243 1 O ILE A 243 N LEU A 208 SHEET 4 AA2 4 GLN A 272 ILE A 278 1 O SER A 274 N ALA A 240 SHEET 1 AA3 2 GLY B 52 PRO B 53 0 SHEET 2 AA3 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 AA4 4 LEU B 123 SER B 126 0 SHEET 2 AA4 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 AA4 4 VAL B 235 ILE B 243 1 O TRP B 241 N VAL B 206 SHEET 4 AA4 4 GLN B 272 ILE B 278 1 O SER B 274 N ALA B 240 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.11 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.06 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.01 SSBOND 4 CYS A 160 CYS A 173 1555 1555 1.85 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.07 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.02 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.07 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.06 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.05 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.09 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.05 CRYST1 41.690 54.128 63.319 108.58 90.98 93.98 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023987 0.001667 0.000998 0.00000 SCALE2 0.000000 0.018519 0.006269 0.00000 SCALE3 0.000000 0.000000 0.016676 0.00000