HEADER SIGNALING PROTEIN 04-JUN-14 4TND TITLE CRYSTAL STRUCTURE OF G PROTEIN-COUPLED RECEPTOR KINASE 5 IN COMPLEX TITLE 2 WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: G PROTEIN-COUPLED RECEPTOR KINASE 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G PROTEIN-COUPLED RECEPTOR KINASE GRK5; COMPND 5 EC: 2.7.11.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRK5, GPRK5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GRK5-(5-ADENYLYLIMIDODIPHOSPHATE) COMPLEX, GRK5-(AMP-PNP) COMPLEX, KEYWDS 2 GPCR KINASE, KINASE, GPCR KINASE 5, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BHARDWAJ,K.E.KOMOLOV,J.L.BENOVIC REVDAT 5 27-SEP-23 4TND 1 REMARK REVDAT 4 22-NOV-17 4TND 1 REMARK REVDAT 3 20-JUL-16 4TND 1 REMARK REVDAT 2 17-JUN-15 4TND 1 JRNL REVDAT 1 10-JUN-15 4TND 0 JRNL AUTH K.E.KOMOLOV,A.BHARDWAJ,J.L.BENOVIC JRNL TITL ATOMIC STRUCTURE OF G PROTEIN-COUPLED RECEPTOR KINASE 5 JRNL TITL 2 (GRK5) REVEALS DISTINCT STRUCTURAL FEATURES NOVEL FOR GRKS. JRNL REF J.BIOL.CHEM. 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26032409 JRNL DOI 10.1074/JBC.M115.647297 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 52638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7452 - 4.7215 1.00 3277 161 0.1600 0.1787 REMARK 3 2 4.7215 - 3.7481 1.00 3069 150 0.1372 0.1567 REMARK 3 3 3.7481 - 3.2744 1.00 3020 149 0.1606 0.1823 REMARK 3 4 3.2744 - 2.9751 1.00 2990 145 0.1821 0.2347 REMARK 3 5 2.9751 - 2.7619 1.00 2965 146 0.1865 0.2225 REMARK 3 6 2.7619 - 2.5991 1.00 2988 146 0.1850 0.1986 REMARK 3 7 2.5991 - 2.4689 1.00 2929 144 0.1838 0.2498 REMARK 3 8 2.4689 - 2.3614 1.00 2946 144 0.1891 0.2460 REMARK 3 9 2.3614 - 2.2705 1.00 2921 144 0.1870 0.2345 REMARK 3 10 2.2705 - 2.1922 1.00 2940 144 0.1795 0.2246 REMARK 3 11 2.1922 - 2.1236 1.00 2891 141 0.1729 0.2315 REMARK 3 12 2.1236 - 2.0629 1.00 2958 145 0.1812 0.1942 REMARK 3 13 2.0629 - 2.0086 1.00 2883 141 0.1843 0.2084 REMARK 3 14 2.0086 - 1.9596 0.97 2818 138 0.1979 0.2502 REMARK 3 15 1.9596 - 1.9151 0.88 2564 126 0.2160 0.2494 REMARK 3 16 1.9151 - 1.8743 0.79 2279 112 0.2214 0.2695 REMARK 3 17 1.8743 - 1.8368 0.69 1995 98 0.2278 0.2863 REMARK 3 18 1.8368 - 1.8022 0.61 1746 85 0.2655 0.2918 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4417 REMARK 3 ANGLE : 1.189 5948 REMARK 3 CHIRALITY : 0.053 621 REMARK 3 PLANARITY : 0.007 773 REMARK 3 DIHEDRAL : 14.196 1709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9558 -11.1954 13.0841 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.1497 REMARK 3 T33: 0.2552 T12: -0.0549 REMARK 3 T13: 0.0405 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.1315 L22: 3.2215 REMARK 3 L33: 4.7022 L12: 0.6153 REMARK 3 L13: 0.7656 L23: -0.5829 REMARK 3 S TENSOR REMARK 3 S11: 0.1455 S12: -0.2117 S13: -0.0026 REMARK 3 S21: 0.5206 S22: -0.1942 S23: -0.2575 REMARK 3 S31: -0.1151 S32: 0.3392 S33: -0.0403 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0005 -10.4319 14.6022 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1530 REMARK 3 T33: 0.2616 T12: 0.0270 REMARK 3 T13: 0.0370 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.7877 L22: 0.3119 REMARK 3 L33: 2.0727 L12: -0.1563 REMARK 3 L13: -2.1559 L23: 0.1470 REMARK 3 S TENSOR REMARK 3 S11: 0.2703 S12: 0.2404 S13: 0.3489 REMARK 3 S21: -0.0137 S22: -0.0755 S23: 0.1284 REMARK 3 S31: -0.1840 S32: -0.3717 S33: -0.1493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2427 -37.5904 23.6041 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.1157 REMARK 3 T33: 0.1702 T12: -0.0074 REMARK 3 T13: 0.0068 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.4624 L22: 0.8918 REMARK 3 L33: 1.2825 L12: 0.3604 REMARK 3 L13: -0.7374 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.0535 S13: -0.2274 REMARK 3 S21: 0.1381 S22: 0.0005 S23: 0.0251 REMARK 3 S31: 0.3538 S32: 0.0242 S33: 0.0562 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6248 -41.0674 32.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2201 REMARK 3 T33: 0.2523 T12: -0.0411 REMARK 3 T13: 0.0911 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.3434 L22: 4.1110 REMARK 3 L33: 1.0023 L12: 0.7905 REMARK 3 L13: -0.1830 L23: -0.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.1200 S12: -0.0546 S13: -0.1232 REMARK 3 S21: 0.1747 S22: 0.1121 S23: 0.4549 REMARK 3 S31: 0.2517 S32: -0.1296 S33: -0.0034 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 543 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3022 -20.6638 12.2589 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1277 REMARK 3 T33: 0.1524 T12: -0.0320 REMARK 3 T13: 0.0024 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.2665 L22: 0.6048 REMARK 3 L33: 1.8075 L12: -0.0799 REMARK 3 L13: -0.4972 L23: 0.3440 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -0.0414 S13: 0.1871 REMARK 3 S21: 0.0668 S22: 0.0626 S23: -0.1056 REMARK 3 S31: -0.1662 S32: 0.0955 S33: -0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.802 REMARK 200 RESOLUTION RANGE LOW (A) : 47.728 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 30.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 63.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82920 REMARK 200 R SYM FOR SHELL (I) : 0.85100 REMARK 200 FOR SHELL : 1.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2ACX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.15 M SODIUM CHLORIDE, REMARK 280 0.1 M BIS-TRIS PH 6.5 CRYSTAL GROWTH AND SIZE IMPROVED BY USING REMARK 280 MICRO-SEEDING TECHNIQUE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.32200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.48750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 219.48300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.48750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.16100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.48750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.48750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 219.48300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.48750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.48750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.16100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 GLU A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 LYS A 547 REMARK 465 LYS A 548 REMARK 465 GLY A 549 REMARK 465 LEU A 550 REMARK 465 LEU A 551 REMARK 465 GLN A 552 REMARK 465 ARG A 553 REMARK 465 LEU A 554 REMARK 465 PHE A 555 REMARK 465 LYS A 556 REMARK 465 ARG A 557 REMARK 465 GLN A 558 REMARK 465 HIS A 559 REMARK 465 GLN A 560 REMARK 465 ASN A 561 REMARK 465 ASN A 562 REMARK 465 SER A 563 REMARK 465 LYS A 564 REMARK 465 SER A 565 REMARK 465 SER A 566 REMARK 465 PRO A 567 REMARK 465 SER A 568 REMARK 465 SER A 569 REMARK 465 LYS A 570 REMARK 465 THR A 571 REMARK 465 SER A 572 REMARK 465 PHE A 573 REMARK 465 ASN A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 ILE A 577 REMARK 465 ASN A 578 REMARK 465 SER A 579 REMARK 465 ASN A 580 REMARK 465 HIS A 581 REMARK 465 VAL A 582 REMARK 465 SER A 583 REMARK 465 SER A 584 REMARK 465 ASN A 585 REMARK 465 SER A 586 REMARK 465 THR A 587 REMARK 465 GLY A 588 REMARK 465 SER A 589 REMARK 465 SER A 590 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 713 O HOH A 775 1.82 REMARK 500 O HOH A 875 O HOH A 985 1.84 REMARK 500 O CYS A 434 O HOH A 701 1.91 REMARK 500 O GLY A 25 O HOH A 702 1.93 REMARK 500 OD2 ASP A 85 O HOH A 703 2.05 REMARK 500 OE1 GLU A 218 O HOH A 704 2.09 REMARK 500 O HOH A 1060 O HOH A 1071 2.10 REMARK 500 O HOH A 746 O HOH A 1136 2.13 REMARK 500 O HOH A 821 O HOH A 1080 2.15 REMARK 500 OE1 GLU A 72 O HOH A 705 2.16 REMARK 500 OE1 GLU A 284 O HOH A 706 2.17 REMARK 500 O HOH A 812 O HOH A 950 2.17 REMARK 500 O HOH A 952 O HOH A 1074 2.18 REMARK 500 OD1 ASP A 476 O HOH A 707 2.19 REMARK 500 NH1 ARG A 68 O HOH A 708 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1111 O HOH A 1111 7645 1.82 REMARK 500 O HOH A 1164 O HOH A 1186 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -62.91 -132.88 REMARK 500 TYR A 189 -166.89 -114.89 REMARK 500 ARG A 310 -6.61 74.64 REMARK 500 ASP A 329 73.64 59.88 REMARK 500 GLU A 438 -141.76 57.79 REMARK 500 ASN A 530 -55.58 -133.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1210 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 329 OD1 REMARK 620 2 ANP A 601 O3G 84.9 REMARK 620 3 ANP A 601 O1B 176.5 92.5 REMARK 620 4 ANP A 601 O2A 81.6 94.1 96.3 REMARK 620 5 HOH A 733 O 95.0 92.8 87.3 172.0 REMARK 620 6 HOH A 809 O 85.7 170.5 96.8 82.8 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TNB RELATED DB: PDB DBREF 4TND A 1 590 UNP P34947 GRK5_HUMAN 1 590 SEQADV 4TND LYS A 104 UNP P34947 GLU 104 CONFLICT SEQADV 4TND HIS A 304 UNP P34947 ARG 304 CONFLICT SEQADV 4TND GLU A 438 UNP P34947 GLY 438 CONFLICT SEQRES 1 A 590 MET GLU LEU GLU ASN ILE VAL ALA ASN THR VAL LEU LEU SEQRES 2 A 590 LYS ALA ARG GLU GLY GLY GLY GLY LYS ARG LYS GLY LYS SEQRES 3 A 590 SER LYS LYS TRP LYS GLU ILE LEU LYS PHE PRO HIS ILE SEQRES 4 A 590 SER GLN CYS GLU ASP LEU ARG ARG THR ILE ASP ARG ASP SEQRES 5 A 590 TYR CYS SER LEU CYS ASP LYS GLN PRO ILE GLY ARG LEU SEQRES 6 A 590 LEU PHE ARG GLN PHE CYS GLU THR ARG PRO GLY LEU GLU SEQRES 7 A 590 CYS TYR ILE GLN PHE LEU ASP SER VAL ALA GLU TYR GLU SEQRES 8 A 590 VAL THR PRO ASP GLU LYS LEU GLY GLU LYS GLY LYS LYS SEQRES 9 A 590 ILE MET THR LYS TYR LEU THR PRO LYS SER PRO VAL PHE SEQRES 10 A 590 ILE ALA GLN VAL GLY GLN ASP LEU VAL SER GLN THR GLU SEQRES 11 A 590 GLU LYS LEU LEU GLN LYS PRO CYS LYS GLU LEU PHE SER SEQRES 12 A 590 ALA CYS ALA GLN SER VAL HIS GLU TYR LEU ARG GLY GLU SEQRES 13 A 590 PRO PHE HIS GLU TYR LEU ASP SER MET PHE PHE ASP ARG SEQRES 14 A 590 PHE LEU GLN TRP LYS TRP LEU GLU ARG GLN PRO VAL THR SEQRES 15 A 590 LYS ASN THR PHE ARG GLN TYR ARG VAL LEU GLY LYS GLY SEQRES 16 A 590 GLY PHE GLY GLU VAL CYS ALA CYS GLN VAL ARG ALA THR SEQRES 17 A 590 GLY LYS MET TYR ALA CYS LYS ARG LEU GLU LYS LYS ARG SEQRES 18 A 590 ILE LYS LYS ARG LYS GLY GLU SER MET ALA LEU ASN GLU SEQRES 19 A 590 LYS GLN ILE LEU GLU LYS VAL ASN SER GLN PHE VAL VAL SEQRES 20 A 590 ASN LEU ALA TYR ALA TYR GLU THR LYS ASP ALA LEU CYS SEQRES 21 A 590 LEU VAL LEU THR ILE MET ASN GLY GLY ASP LEU LYS PHE SEQRES 22 A 590 HIS ILE TYR ASN MET GLY ASN PRO GLY PHE GLU GLU GLU SEQRES 23 A 590 ARG ALA LEU PHE TYR ALA ALA GLU ILE LEU CYS GLY LEU SEQRES 24 A 590 GLU ASP LEU HIS HIS GLU ASN THR VAL TYR ARG ASP LEU SEQRES 25 A 590 LYS PRO GLU ASN ILE LEU LEU ASP ASP TYR GLY HIS ILE SEQRES 26 A 590 ARG ILE SER ASP LEU GLY LEU ALA VAL LYS ILE PRO GLU SEQRES 27 A 590 GLY ASP LEU ILE ARG GLY ARG VAL GLY THR VAL GLY TYR SEQRES 28 A 590 MET ALA PRO GLU VAL LEU ASN ASN GLN ARG TYR GLY LEU SEQRES 29 A 590 SER PRO ASP TYR TRP GLY LEU GLY CYS LEU ILE TYR GLU SEQRES 30 A 590 MET ILE GLU GLY GLN SER PRO PHE ARG GLY ARG LYS GLU SEQRES 31 A 590 LYS VAL LYS ARG GLU GLU VAL ASP ARG ARG VAL LEU GLU SEQRES 32 A 590 THR GLU GLU VAL TYR SER HIS LYS PHE SER GLU GLU ALA SEQRES 33 A 590 LYS SER ILE CYS LYS MET LEU LEU THR LYS ASP ALA LYS SEQRES 34 A 590 GLN ARG LEU GLY CYS GLN GLU GLU GLU ALA ALA GLU VAL SEQRES 35 A 590 LYS ARG HIS PRO PHE PHE ARG ASN MET ASN PHE LYS ARG SEQRES 36 A 590 LEU GLU ALA GLY MET LEU ASP PRO PRO PHE VAL PRO ASP SEQRES 37 A 590 PRO ARG ALA VAL TYR CYS LYS ASP VAL LEU ASP ILE GLU SEQRES 38 A 590 GLN PHE SER THR VAL LYS GLY VAL ASN LEU ASP HIS THR SEQRES 39 A 590 ASP ASP ASP PHE TYR SER LYS PHE SER THR GLY SER VAL SEQRES 40 A 590 SER ILE PRO TRP GLN ASN GLU MET ILE GLU THR GLU CYS SEQRES 41 A 590 PHE LYS GLU LEU ASN VAL PHE GLY PRO ASN GLY THR LEU SEQRES 42 A 590 PRO PRO ASP LEU ASN ARG ASN HIS PRO PRO GLU PRO PRO SEQRES 43 A 590 LYS LYS GLY LEU LEU GLN ARG LEU PHE LYS ARG GLN HIS SEQRES 44 A 590 GLN ASN ASN SER LYS SER SER PRO SER SER LYS THR SER SEQRES 45 A 590 PHE ASN HIS HIS ILE ASN SER ASN HIS VAL SER SER ASN SEQRES 46 A 590 SER THR GLY SER SER HET ANP A 601 31 HET MG A 602 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *510(H2 O) HELIX 1 AA1 LYS A 29 LEU A 34 1 6 HELIX 2 AA2 HIS A 38 GLN A 41 5 4 HELIX 3 AA3 CYS A 42 ILE A 49 1 8 HELIX 4 AA4 ASP A 52 ASP A 58 1 7 HELIX 5 AA5 GLN A 60 GLU A 72 1 13 HELIX 6 AA6 ARG A 74 VAL A 92 1 19 HELIX 7 AA7 PRO A 94 GLU A 96 5 3 HELIX 8 AA8 LYS A 97 LEU A 110 1 14 HELIX 9 AA9 GLY A 122 GLN A 135 1 14 HELIX 10 AB1 PHE A 142 ARG A 154 1 13 HELIX 11 AB2 GLY A 155 ASP A 163 1 9 HELIX 12 AB3 SER A 164 ARG A 178 1 15 HELIX 13 AB4 LYS A 219 ARG A 225 1 7 HELIX 14 AB5 GLY A 227 VAL A 241 1 15 HELIX 15 AB6 LEU A 271 MET A 278 1 8 HELIX 16 AB7 GLU A 284 GLU A 305 1 22 HELIX 17 AB8 LYS A 313 GLU A 315 5 3 HELIX 18 AB9 ASP A 329 ALA A 333 5 5 HELIX 19 AC1 ALA A 353 ASN A 358 1 6 HELIX 20 AC2 SER A 365 GLY A 381 1 17 HELIX 21 AC3 LYS A 393 THR A 404 1 12 HELIX 22 AC4 SER A 413 LEU A 424 1 12 HELIX 23 AC5 ASP A 427 ARG A 431 5 5 HELIX 24 AC6 GLU A 438 ARG A 444 1 7 HELIX 25 AC7 HIS A 445 ARG A 449 5 5 HELIX 26 AC8 ASN A 452 ALA A 458 1 7 HELIX 27 AC9 HIS A 493 SER A 503 1 11 HELIX 28 AD1 VAL A 507 THR A 518 1 12 HELIX 29 AD2 GLU A 519 ASN A 525 1 7 HELIX 30 AD3 PRO A 534 ASN A 538 5 5 SHEET 1 AA1 6 PHE A 186 GLY A 195 0 SHEET 2 AA1 6 GLY A 198 VAL A 205 -1 O VAL A 200 N GLY A 193 SHEET 3 AA1 6 MET A 211 GLU A 218 -1 O CYS A 214 N CYS A 201 SHEET 4 AA1 6 ALA A 258 LEU A 263 -1 O LEU A 259 N LEU A 217 SHEET 5 AA1 6 LEU A 249 GLU A 254 -1 N TYR A 251 O VAL A 262 SHEET 6 AA1 6 GLY A 505 SER A 506 -1 O GLY A 505 N ALA A 252 SHEET 1 AA2 3 GLY A 269 ASP A 270 0 SHEET 2 AA2 3 ILE A 317 LEU A 319 -1 O LEU A 319 N GLY A 269 SHEET 3 AA2 3 ILE A 325 ILE A 327 -1 O ARG A 326 N LEU A 318 SHEET 1 AA3 2 THR A 307 VAL A 308 0 SHEET 2 AA3 2 VAL A 334 LYS A 335 -1 O VAL A 334 N VAL A 308 LINK OD1 ASP A 329 MG MG A 602 1555 1555 2.19 LINK O3G ANP A 601 MG MG A 602 1555 1555 1.98 LINK O1B ANP A 601 MG MG A 602 1555 1555 1.97 LINK O2A ANP A 601 MG MG A 602 1555 1555 1.98 LINK MG MG A 602 O HOH A 733 1555 1555 2.23 LINK MG MG A 602 O HOH A 809 1555 1555 2.25 SITE 1 AC1 24 GLY A 195 GLY A 196 VAL A 200 ALA A 213 SITE 2 AC1 24 LYS A 215 THR A 264 MET A 266 LEU A 318 SITE 3 AC1 24 ASP A 329 ARG A 470 MG A 602 HOH A 709 SITE 4 AC1 24 HOH A 733 HOH A 744 HOH A 749 HOH A 752 SITE 5 AC1 24 HOH A 753 HOH A 756 HOH A 782 HOH A 809 SITE 6 AC1 24 HOH A 880 HOH A 965 HOH A 977 HOH A1017 SITE 1 AC2 4 ASP A 329 ANP A 601 HOH A 733 HOH A 809 CRYST1 62.975 62.975 292.644 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003417 0.00000