HEADER HYDROLASE 04-JUN-14 4TNL TITLE 1.8 A RESOLUTION ROOM TEMPERATURE STRUCTURE OF THERMOLYSIN RECORDED TITLE 2 USING AN XFEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 233-548; COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS ZN PROTEASE, X-RAY FREE ELECTRON LASER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KERN,R.TRAN,R.ALONSO-MORI,S.KOROIDOV,N.ECHOLS,J.HATTNE,M.IBRAHIM, AUTHOR 2 S.GUL,H.LAKSMONO,R.G.SIERRA,R.J.GILDEA,G.HAN,J.HELLMICH,B.LASSALLE- AUTHOR 3 KAISER,R.CHATTERJEE,A.BREWSTER,C.A.STAN,C.GLOECKNER,A.LAMPE, AUTHOR 4 D.DIFIORE,D.MILATHIANAKI,A.R.FRY,M.M.SEIBERT,J.E.KOGLIN,E.GALLO, AUTHOR 5 J.UHLIG,D.SOKARAS,T.-C.WENG,P.H.ZWART,D.E.SKINNER,M.J.BOGAN, AUTHOR 6 M.MESSERSCHMIDT,P.GLATZEL,G.J.WILLIAMS,S.BOUTET,P.D.ADAMS,A.ZOUNI, AUTHOR 7 J.MESSINGER,N.K.SAUTER,U.BERGMANN,J.YANO,V.K.YACHANDRA REVDAT 4 27-SEP-23 4TNL 1 REMARK LINK REVDAT 3 07-OCT-15 4TNL 1 REMARK REVDAT 2 23-JUL-14 4TNL 1 JRNL REVDAT 1 09-JUL-14 4TNL 0 JRNL AUTH J.KERN,R.TRAN,R.ALONSO-MORI,S.KOROIDOV,N.ECHOLS,J.HATTNE, JRNL AUTH 2 M.IBRAHIM,S.GUL,H.LAKSMONO,R.G.SIERRA,R.J.GILDEA,G.HAN, JRNL AUTH 3 J.HELLMICH,B.LASSALLE-KAISER,R.CHATTERJEE,A.S.BREWSTER, JRNL AUTH 4 C.A.STAN,C.GLOCKNER,A.LAMPE,D.DIFIORE,D.MILATHIANAKI, JRNL AUTH 5 A.R.FRY,M.M.SEIBERT,J.E.KOGLIN,E.GALLO,J.UHLIG,D.SOKARAS, JRNL AUTH 6 T.C.WENG,P.H.ZWART,D.E.SKINNER,M.J.BOGAN,M.MESSERSCHMIDT, JRNL AUTH 7 P.GLATZEL,G.J.WILLIAMS,S.BOUTET,P.D.ADAMS,A.ZOUNI, JRNL AUTH 8 J.MESSINGER,N.K.SAUTER,U.BERGMANN,J.YANO,V.K.YACHANDRA JRNL TITL TAKING SNAPSHOTS OF PHOTOSYNTHETIC WATER OXIDATION USING JRNL TITL 2 FEMTOSECOND X-RAY DIFFRACTION AND SPECTROSCOPY. JRNL REF NAT COMMUN V. 5 4371 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25006873 JRNL DOI 10.1038/NCOMMS5371 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 66 213 2010 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1647+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.421 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.236 REMARK 3 FREE R VALUE TEST SET COUNT : 3063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2797 - 5.0386 1.00 2544 125 0.2129 0.2433 REMARK 3 2 5.0386 - 4.0012 1.00 2523 144 0.1888 0.1788 REMARK 3 3 4.0012 - 3.4960 1.00 2523 134 0.1896 0.1853 REMARK 3 4 3.4960 - 3.1766 1.00 2552 126 0.1869 0.2299 REMARK 3 5 3.1766 - 2.9491 1.00 2524 124 0.1928 0.1824 REMARK 3 6 2.9491 - 2.7753 1.00 2543 128 0.1919 0.2293 REMARK 3 7 2.7753 - 2.6364 1.00 2515 140 0.1846 0.2372 REMARK 3 8 2.6364 - 2.5216 1.00 2477 176 0.1917 0.2322 REMARK 3 9 2.5216 - 2.4246 1.00 2538 124 0.2033 0.2333 REMARK 3 10 2.4246 - 2.3409 1.00 2545 128 0.2013 0.2477 REMARK 3 11 2.3409 - 2.2678 1.00 2503 144 0.1964 0.2671 REMARK 3 12 2.2678 - 2.2029 1.00 2517 153 0.2038 0.2184 REMARK 3 13 2.2029 - 2.1450 1.00 2481 166 0.2180 0.2515 REMARK 3 14 2.1450 - 2.0926 1.00 2535 136 0.2195 0.2708 REMARK 3 15 2.0926 - 2.0451 1.00 2522 139 0.2304 0.2630 REMARK 3 16 2.0451 - 2.0016 1.00 2516 135 0.2373 0.2761 REMARK 3 17 2.0016 - 1.9615 1.00 2537 142 0.2510 0.2345 REMARK 3 18 1.9615 - 1.9245 1.00 2498 140 0.2579 0.2196 REMARK 3 19 1.9245 - 1.8901 1.00 2540 138 0.2797 0.2669 REMARK 3 20 1.8901 - 1.8581 1.00 2482 146 0.3169 0.3094 REMARK 3 21 1.8581 - 1.8281 1.00 2540 140 0.3400 0.3673 REMARK 3 22 1.8281 - 1.8000 0.98 2482 135 0.3692 0.3752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2473 REMARK 3 ANGLE : 0.924 3369 REMARK 3 CHIRALITY : 0.034 359 REMARK 3 PLANARITY : 0.004 445 REMARK 3 DIHEDRAL : 12.561 845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 120408 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27 REMARK 200 MONOCHROMATOR : NO MONOCHROMATOR, FEL BEAM WITH REMARK 200 20-30 EV BANDWIDTH REMARK 200 OPTICS : COLLECTED AT THE CXI INSTRUMENT REMARK 200 AT LCLS/SLAC USING THE CSPAD REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD DETECTOR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31458 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 34.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1468. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 71.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2TLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 UL OF THE PROTEIN STOCK WAS MIXED REMARK 280 IN A 1:1 RATIO WITH 40% PEG 2000, 100 MM MES PH 6.5, 5 MM CACL2. REMARK 280 CRYSTALLIZATION OCCURRED WITHIN MINUTES., BATCH MODE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.47000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.94000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.20500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.67500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.73500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.47000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.94000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.67500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.20500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 1 CG1 CG2 CD1 REMARK 470 LYS A 316 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 586 O HOH A 591 1.84 REMARK 500 O HOH A 662 O HOH A 700 1.90 REMARK 500 O HOH A 772 O HOH A 780 1.96 REMARK 500 O HOH A 739 O HOH A 817 1.97 REMARK 500 O HOH A 606 O HOH A 734 1.99 REMARK 500 O HOH A 690 O HOH A 776 1.99 REMARK 500 O HOH A 760 O HOH A 815 2.00 REMARK 500 O HOH A 642 O HOH A 815 2.02 REMARK 500 O HOH A 752 O HOH A 754 2.02 REMARK 500 O HOH A 755 O HOH A 756 2.04 REMARK 500 O HOH A 705 O HOH A 740 2.08 REMARK 500 NE ARG A 11 O HOH A 501 2.09 REMARK 500 O HOH A 801 O HOH A 820 2.09 REMARK 500 OD2 ASP A 150 O HOH A 502 2.11 REMARK 500 O HOH A 694 O HOH A 695 2.13 REMARK 500 O HOH A 699 O HOH A 701 2.15 REMARK 500 N ASN A 183 O HOH A 798 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH A 596 6555 2.16 REMARK 500 O HOH A 604 O HOH A 740 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -63.15 63.27 REMARK 500 SER A 92 -174.06 60.04 REMARK 500 SER A 107 -163.51 61.22 REMARK 500 ASN A 111 45.70 -91.02 REMARK 500 THR A 152 -96.00 -115.13 REMARK 500 ASN A 159 -139.58 55.10 REMARK 500 THR A 194 76.20 41.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 755 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH A 793 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.3 REMARK 620 3 ASP A 59 OD1 120.0 68.9 REMARK 620 4 GLN A 61 O 93.7 88.0 88.3 REMARK 620 5 HOH A 573 O 82.2 85.8 89.7 173.8 REMARK 620 6 HOH A 611 O 87.2 137.1 152.1 83.8 100.5 REMARK 620 7 HOH A 646 O 161.4 145.7 76.9 94.4 90.9 77.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 79.5 REMARK 620 3 GLU A 177 OE2 129.7 50.3 REMARK 620 4 ASP A 185 OD1 159.8 120.5 70.2 REMARK 620 5 GLU A 187 O 81.5 144.6 141.3 82.3 REMARK 620 6 GLU A 190 OE1 81.4 128.5 124.1 83.2 77.0 REMARK 620 7 GLU A 190 OE2 93.8 81.8 77.3 87.2 129.2 52.4 REMARK 620 8 HOH A 629 O 98.1 82.6 81.2 87.9 70.8 147.5 158.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 106.6 REMARK 620 3 GLU A 166 OE2 133.1 92.4 REMARK 620 4 HOH A 637 O 111.6 110.1 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 96.0 REMARK 620 3 ASP A 185 OD2 90.0 92.0 REMARK 620 4 GLU A 190 OE2 84.5 175.7 83.8 REMARK 620 5 HOH A 623 O 173.7 89.1 93.7 90.8 REMARK 620 6 HOH A 641 O 90.9 94.2 173.6 90.0 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 76.5 REMARK 620 3 THR A 194 OG1 73.6 72.1 REMARK 620 4 ILE A 197 O 150.1 74.9 105.3 REMARK 620 5 ASP A 200 OD1 126.0 131.7 75.2 80.6 REMARK 620 6 HOH A 615 O 84.1 151.5 122.1 118.6 76.7 REMARK 620 7 HOH A 786 O 89.9 82.2 152.0 77.7 132.1 77.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 DBREF 4TNL A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET ZN A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *324(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 ASN A 89 1 23 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 THR A 152 1 17 HELIX 5 AA5 GLN A 158 ASN A 181 1 24 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 HIS A 216 ARG A 220 5 5 HELIX 8 AA8 THR A 224 VAL A 230 1 7 HELIX 9 AA9 ASN A 233 GLY A 247 1 15 HELIX 10 AB1 GLY A 259 TYR A 274 1 16 HELIX 11 AB2 ASN A 280 GLY A 297 1 18 HELIX 12 AB3 SER A 300 VAL A 313 1 14 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N GLY A 8 O ILE A 20 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N VAL A 9 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 VAL A 104 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 TYR A 122 1 O MET A 120 N ARG A 101 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AA5 2 GLY A 248 HIS A 250 0 SHEET 2 AA5 2 VAL A 253 VAL A 255 -1 O VAL A 253 N HIS A 250 LINK OD1 ASP A 57 CA CA A 405 1555 1555 2.37 LINK OD2 ASP A 57 CA CA A 405 1555 1555 2.66 LINK OD1 ASP A 59 CA CA A 405 1555 1555 2.37 LINK O GLN A 61 CA CA A 405 1555 1555 2.27 LINK OD2 ASP A 138 CA CA A 402 1555 1555 2.55 LINK NE2 HIS A 142 ZN ZN A 401 1555 1555 2.00 LINK NE2 HIS A 146 ZN ZN A 401 1555 1555 2.01 LINK OE2 GLU A 166 ZN ZN A 401 1555 1555 2.16 LINK OE1 GLU A 177 CA CA A 402 1555 1555 2.46 LINK OE2 GLU A 177 CA CA A 402 1555 1555 2.67 LINK OE2 GLU A 177 CA CA A 403 1555 1555 2.42 LINK O ASN A 183 CA CA A 403 1555 1555 2.34 LINK OD1 ASP A 185 CA CA A 402 1555 1555 2.45 LINK OD2 ASP A 185 CA CA A 403 1555 1555 2.45 LINK O GLU A 187 CA CA A 402 1555 1555 2.36 LINK OE1 GLU A 190 CA CA A 402 1555 1555 2.47 LINK OE2 GLU A 190 CA CA A 402 1555 1555 2.49 LINK OE2 GLU A 190 CA CA A 403 1555 1555 2.38 LINK O TYR A 193 CA CA A 404 1555 1555 2.33 LINK O THR A 194 CA CA A 404 1555 1555 2.40 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.47 LINK O ILE A 197 CA CA A 404 1555 1555 2.41 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.34 LINK ZN ZN A 401 O HOH A 637 1555 1555 2.03 LINK CA CA A 402 O HOH A 629 1555 1555 2.43 LINK CA CA A 403 O HOH A 623 1555 1555 2.41 LINK CA CA A 403 O HOH A 641 1555 1555 2.41 LINK CA CA A 404 O HOH A 615 1555 1555 2.43 LINK CA CA A 404 O HOH A 786 1555 1555 2.28 LINK CA CA A 405 O HOH A 573 1555 1555 2.30 LINK CA CA A 405 O HOH A 611 1555 1555 2.43 LINK CA CA A 405 O HOH A 646 1555 1555 2.43 CISPEP 1 LEU A 50 PRO A 51 0 5.99 SITE 1 AC1 5 HIS A 142 HIS A 146 GLU A 166 HOH A 637 SITE 2 AC1 5 HOH A 694 SITE 1 AC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC2 6 GLU A 190 HOH A 629 SITE 1 AC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC3 6 HOH A 623 HOH A 641 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A 615 HOH A 786 SITE 1 AC5 6 ASP A 57 ASP A 59 GLN A 61 HOH A 573 SITE 2 AC5 6 HOH A 611 HOH A 646 CRYST1 93.041 93.041 130.410 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010748 0.006205 0.000000 0.00000 SCALE2 0.000000 0.012411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007668 0.00000