HEADER OXIDOREDUCTASE 08-JUN-14 4TPO TITLE HIGH-RESOLUTION STRUCTURE OF TXTE WITH BOUND TRYPTOPHAN SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE P450-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SCABIES; SOURCE 3 ORGANISM_TAXID: 680198; SOURCE 4 STRAIN: 87.22; SOURCE 5 GENE: SCAB_31831; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS CYTOCHROME, P450, HEME, NITRATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.B.CAHN,S.C.DODANI,S.BRINKMANN-CHEN,T.HEINSICH,J.A.MCINTOSH, AUTHOR 2 F.H.ARNOLD REVDAT 5 27-DEC-23 4TPO 1 REMARK REVDAT 4 22-NOV-17 4TPO 1 SOURCE REMARK REVDAT 3 15-OCT-14 4TPO 1 JRNL REVDAT 2 17-SEP-14 4TPO 1 JRNL REVDAT 1 10-SEP-14 4TPO 0 JRNL AUTH S.C.DODANI,J.K.CAHN,T.HEINISCH,S.BRINKMANN-CHEN, JRNL AUTH 2 J.A.MCINTOSH,F.H.ARNOLD JRNL TITL STRUCTURAL, FUNCTIONAL, AND SPECTROSCOPIC CHARACTERIZATION JRNL TITL 2 OF THE SUBSTRATE SCOPE OF THE NOVEL NITRATING CYTOCHROME JRNL TITL 3 P450 TXTE. JRNL REF CHEMBIOCHEM V. 15 2259 2014 JRNL REFN ESSN 1439-7633 JRNL PMID 25182183 JRNL DOI 10.1002/CBIC.201402241 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 161654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 478 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.337 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3341 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3159 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4593 ; 2.256 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7241 ; 1.463 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3821 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 794 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1622 ; 3.460 ; 1.884 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1621 ; 3.460 ; 1.884 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2029 ; 4.103 ; 2.822 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2030 ; 4.103 ; 2.823 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 6.313 ; 2.358 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1703 ; 6.160 ; 2.317 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2530 ; 6.950 ; 3.298 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3258 ; 5.605 ;20.942 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3005 ; 5.434 ;20.175 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6499 ; 6.097 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 108 ;27.396 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6711 ;13.513 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL K-B FOCUSING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 170299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.225 REMARK 200 RESOLUTION RANGE LOW (A) : 65.021 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.99500 REMARK 200 R SYM FOR SHELL (I) : 0.99500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25 M LI2SO4, 0.5 M (NH4)2SO4, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.91600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.27700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.82850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.27700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.91600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.82850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 ASP A 181 REMARK 465 GLN A 182 REMARK 465 PRO A 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 N CA CB CG ND1 CD2 CE1 REMARK 470 HIS A 0 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 753 O HOH A 960 1.67 REMARK 500 OD1 ASP A 76 O HOH A 601 1.73 REMARK 500 O ASP A 76 NH1 ARG A 81 1.86 REMARK 500 O HOH A 798 O HOH A 960 1.90 REMARK 500 O HOH A 939 O HOH A 943 1.98 REMARK 500 O HOH A 613 O HOH A 688 1.98 REMARK 500 O HOH A 798 O HOH A 943 2.04 REMARK 500 OD2 ASP A 76 O HOH A 602 2.08 REMARK 500 O HOH A 753 O HOH A 943 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 8 N ALA A 8 CA 0.123 REMARK 500 ARG A 81 CZ ARG A 81 NH2 0.129 REMARK 500 GLU A 160 CG GLU A 160 CD 0.094 REMARK 500 GLU A 160 CD GLU A 160 OE2 0.079 REMARK 500 GLU A 191 CD GLU A 191 OE2 0.071 REMARK 500 ARG A 377 CZ ARG A 377 NH1 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 CG - CD - NE ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PRO A 75 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 115 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 219 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 280 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 303 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 336 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 377 CD - NE - CZ ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 399 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 403 CB - CG - CD2 ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 87.37 -155.36 REMARK 500 LEU A 142 -58.61 -132.67 REMARK 500 ARG A 208 -143.67 -114.23 REMARK 500 ALA A 384 61.11 -119.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 75 ASP A 76 -144.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 963 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 99.4 REMARK 620 3 HEM A 501 NB 91.3 90.3 REMARK 620 4 HEM A 501 NC 88.4 172.2 88.9 REMARK 620 5 HEM A 501 ND 96.7 89.2 172.0 90.5 REMARK 620 6 HOH A 944 O 173.6 84.9 83.9 87.3 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TPN RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT THE TRYPTOPHAN SUBSTRATE DBREF 4TPO A 1 406 UNP C9ZDC6 C9ZDC6_STRSW 1 406 SEQADV 4TPO HIS A 0 UNP C9ZDC6 EXPRESSION TAG SEQRES 1 A 407 HIS MET THR VAL PRO SER PRO LEU ALA ASP PRO SER ILE SEQRES 2 A 407 VAL PRO ASP PRO TYR PRO VAL TYR ALA ASP LEU ALA GLN SEQRES 3 A 407 ARG ARG PRO VAL HIS TRP VAL GLU ARG LEU ASN ALA TRP SEQRES 4 A 407 ALA VAL LEU THR TYR ALA ASP CYS ALA ALA GLY LEU LYS SEQRES 5 A 407 ASP PRO ARG LEU THR ALA ASP ARG GLY THR GLU VAL LEU SEQRES 6 A 407 ALA ALA LYS PHE PRO GLY GLN PRO LEU PRO PRO ASP ASN SEQRES 7 A 407 ILE PHE HIS ARG TRP THR LYS ASN VAL VAL MET TYR THR SEQRES 8 A 407 ASP PRO PRO LEU HIS ASP ALA LEU ARG ARG SER VAL ARG SEQRES 9 A 407 ALA GLY PHE THR ARG ALA ALA HIS GLN HIS TYR ASP GLN SEQRES 10 A 407 VAL LEU GLN LYS VAL ALA HIS ASP LEU VAL ALA SER ILE SEQRES 11 A 407 PRO ALA GLY ALA THR GLU ILE ASP ALA VAL PRO ALA LEU SEQRES 12 A 407 ALA ALA GLU LEU PRO VAL ARG SER ALA VAL HIS ALA PHE SEQRES 13 A 407 GLY VAL PRO GLU GLU ASP LEU GLY PHE LEU ILE PRO ARG SEQRES 14 A 407 VAL ASN THR ILE MET THR TYR HIS SER GLY PRO LYS ASP SEQRES 15 A 407 GLN PRO VAL THR GLN GLU ILE ILE LEU GLU LYS LEU THR SEQRES 16 A 407 ASP LEU HIS THR TYR ALA SER GLU LEU LEU GLN GLY MET SEQRES 17 A 407 ARG GLY LYS VAL LEU PRO ASP THR VAL ILE ALA ARG LEU SEQRES 18 A 407 ALA ALA ALA GLN ASP GLY LEU THR GLU THR THR PRO GLU SEQRES 19 A 407 GLN THR VAL HIS GLN LEU ALA LEU VAL PHE ILE ALA LEU SEQRES 20 A 407 PHE ALA PRO THR THR PRO GLY SER LEU SER SER GLY THR SEQRES 21 A 407 LEU ALA PHE ALA ARG ASN PRO ARG GLN VAL GLU ARG PHE SEQRES 22 A 407 LEU ALA ASP GLN ALA CYS VAL ASP ASN THR ALA ASN GLU SEQRES 23 A 407 VAL LEU ARG TYR ASN ALA SER ASN GLN PHE THR TRP ARG SEQRES 24 A 407 VAL ALA ALA LYS ASP VAL GLU MET GLY GLY VAL ARG ILE SEQRES 25 A 407 GLU ALA GLY GLN THR LEU ALA LEU PHE LEU GLY SER ALA SEQRES 26 A 407 ASN ARG ASP ALA ASN MET PHE GLU ARG PRO ASN ASP PHE SEQRES 27 A 407 ASP LEU ASP ARG PRO ASN SER ALA ARG HIS LEU SER PHE SEQRES 28 A 407 GLY GLN GLY VAL HIS ALA CYS LEU ALA ALA GLN LEU ILE SEQRES 29 A 407 SER LEU GLN LEU LYS TRP PHE TYR VAL ALA LEU LEU ASN SEQRES 30 A 407 ARG PHE PRO GLY ILE ARG THR ALA GLY GLU PRO ILE TRP SEQRES 31 A 407 ASN GLU ASN LEU GLU PHE ARG SER LEU ARG SER LEU PRO SEQRES 32 A 407 LEU SER LEU ARG HET HEM A 501 43 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET TRP A 505 15 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM TRP TRYPTOPHAN HETNAM SO4 SULFATE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 TRP C11 H12 N2 O2 FORMUL 7 SO4 4(O4 S 2-) FORMUL 11 HOH *409(H2 O) HELIX 1 AA1 ASP A 9 VAL A 13 5 5 HELIX 2 AA2 PRO A 16 ARG A 27 1 12 HELIX 3 AA3 GLU A 33 LEU A 35 5 3 HELIX 4 AA4 THR A 42 ASP A 52 1 11 HELIX 5 AA5 ARG A 59 PHE A 68 1 10 HELIX 6 AA6 ASN A 77 LYS A 84 1 8 HELIX 7 AA7 ASN A 85 THR A 90 5 6 HELIX 8 AA8 PRO A 93 SER A 101 1 9 HELIX 9 AA9 VAL A 102 PHE A 106 5 5 HELIX 10 AB1 THR A 107 SER A 128 1 22 HELIX 11 AB2 ALA A 138 LEU A 142 1 5 HELIX 12 AB3 GLU A 145 ALA A 154 1 10 HELIX 13 AB4 PRO A 158 GLU A 160 5 3 HELIX 14 AB5 ASP A 161 MET A 173 1 13 HELIX 15 AB6 THR A 185 GLN A 205 1 21 HELIX 16 AB7 THR A 215 ALA A 223 1 9 HELIX 17 AB8 GLN A 224 LEU A 227 5 4 HELIX 18 AB9 THR A 231 ALA A 248 1 18 HELIX 19 AC1 PRO A 249 ASN A 265 1 17 HELIX 20 AC2 ASN A 265 ASP A 275 1 11 HELIX 21 AC3 ASP A 275 ASN A 281 1 7 HELIX 22 AC4 ASN A 281 ASN A 290 1 10 HELIX 23 AC5 PHE A 320 ASN A 325 1 6 HELIX 24 AC6 ASN A 343 HIS A 347 5 5 HELIX 25 AC7 ALA A 359 PHE A 378 1 20 SHEET 1 AA1 5 VAL A 29 VAL A 32 0 SHEET 2 AA1 5 ALA A 37 VAL A 40 -1 O ALA A 39 N HIS A 30 SHEET 3 AA1 5 THR A 316 LEU A 319 1 O ALA A 318 N TRP A 38 SHEET 4 AA1 5 THR A 296 ALA A 300 -1 N THR A 296 O LEU A 319 SHEET 5 AA1 5 LEU A 55 THR A 56 -1 N THR A 56 O VAL A 299 SHEET 1 AA2 3 GLU A 135 ASP A 137 0 SHEET 2 AA2 3 PRO A 402 SER A 404 -1 O LEU A 403 N ILE A 136 SHEET 3 AA2 3 ARG A 382 THR A 383 -1 N ARG A 382 O SER A 404 SHEET 1 AA3 2 VAL A 304 MET A 306 0 SHEET 2 AA3 2 VAL A 309 ILE A 311 -1 O ILE A 311 N VAL A 304 SHEET 1 AA4 2 ILE A 388 TRP A 389 0 SHEET 2 AA4 2 LEU A 398 SER A 400 -1 O ARG A 399 N ILE A 388 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.40 LINK FE HEM A 501 O HOH A 944 1555 1555 2.38 CISPEP 1 PRO A 92 PRO A 93 0 8.71 SITE 1 AC1 25 ARG A 59 VAL A 87 MET A 88 HIS A 95 SITE 2 AC1 25 ARG A 99 PHE A 155 ALA A 245 THR A 250 SITE 3 AC1 25 THR A 251 SER A 254 ASN A 293 THR A 296 SITE 4 AC1 25 ARG A 298 LEU A 321 SER A 349 GLY A 351 SITE 5 AC1 25 VAL A 354 HIS A 355 CYS A 357 ALA A 359 SITE 6 AC1 25 ILE A 363 TRP A 505 HOH A 715 HOH A 944 SITE 7 AC1 25 HOH A1006 SITE 1 AC2 6 ASP A 280 SER A 364 LEU A 365 HOH A 708 SITE 2 AC2 6 HOH A 729 HOH A 862 SITE 1 AC3 8 ASN A 284 ALA A 360 GLN A 361 SER A 364 SITE 2 AC3 8 HOH A 729 HOH A 765 HOH A 871 HOH A1004 SITE 1 AC4 7 MET A 330 PHE A 331 GLU A 332 ARG A 341 SITE 2 AC4 7 PRO A 342 ASN A 343 HOH A 955 SITE 1 AC5 11 ARG A 59 MET A 88 TYR A 89 ASN A 293 SITE 2 AC5 11 THR A 296 TRP A 297 HEM A 501 HOH A 754 SITE 3 AC5 11 HOH A 856 HOH A 935 HOH A 944 SITE 1 AC6 6 TYR A 175 ASN A 390 GLU A 391 ASN A 392 SITE 2 AC6 6 ARG A 399 HOH A 981 SITE 1 AC7 6 ARG A 168 HOH A 603 HOH A 604 HOH A 629 SITE 2 AC7 6 HOH A 666 HOH A 819 SITE 1 AC8 7 ARG A 103 THR A 107 ARG A 108 SO4 A 509 SITE 2 AC8 7 HOH A 728 HOH A 910 HOH A 911 SITE 1 AC9 5 THR A 107 SO4 A 508 HOH A 726 HOH A 728 SITE 2 AC9 5 HOH A 911 CRYST1 65.832 79.657 112.554 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008885 0.00000