HEADER IMMUNE SYSTEM 09-JUN-14 4TPR TITLE STRUCTURE OF TAU5 ANTIBODY FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: IF KAPPA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: FAB LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB HEAVY CHAIN; COMPND 7 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNE SYSTEM, MONOCLONAL ANTIBODY EXPDTA X-RAY DIFFRACTION AUTHOR O.CEHLAR,R.SKRABANA,M.NOVAK REVDAT 3 20-DEC-23 4TPR 1 REMARK REVDAT 2 17-JUL-19 4TPR 1 REMARK REVDAT 1 29-JUL-15 4TPR 0 JRNL AUTH O.CEHLAR,R.SKRABANA,M.NOVAK JRNL TITL STRUCTURE OF TAU5 ANTIBODY FAB FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 51747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2736 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2595 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3791 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3455 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5170 ; 1.364 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8053 ; 0.751 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;36.073 ;24.497 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;11.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.547 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 560 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4313 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 849 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1867 ; 1.912 ; 1.563 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1865 ; 1.909 ; 1.559 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 2.508 ; 2.340 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2364 ; 2.508 ; 2.341 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1924 ; 2.591 ; 1.941 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1924 ; 2.586 ; 1.941 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2796 ; 2.990 ; 2.754 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4244 ; 4.089 ;14.194 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4245 ; 4.089 ;14.203 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7245 ; 3.059 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 128 ;31.698 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7351 ; 8.527 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54464 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 67.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 7.236 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.69 REMARK 200 R MERGE FOR SHELL (I) : 1.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 12E8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M BIS-TRIS, 25 % W/V REMARK 280 PEG 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.68700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.20400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.68700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.20400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL L 303 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU L 192 O HOH L 430 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -49.33 72.32 REMARK 500 SER L 57 11.65 -142.65 REMARK 500 SER L 72 -139.71 -96.79 REMARK 500 ALA H 16 -159.47 -96.21 REMARK 500 THR H 105 -162.95 -163.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA L 117 O REMARK 620 2 THR L 119 OG1 113.3 REMARK 620 3 ASN L 142 O 111.5 86.1 REMARK 620 4 ASN L 143 O 88.6 157.5 80.5 REMARK 620 5 HOH H 436 O 124.8 81.9 122.7 90.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS L 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 33O H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 305 DBREF 4TPR L 1 218 UNP A2NHM3 A2NHM3_MOUSE 1 218 DBREF 4TPR H 1 221 PDB 4TPR 4TPR 1 221 SEQADV 4TPR SER L 32 UNP A2NHM3 THR 32 CONFLICT SEQADV 4TPR TRP L 101 UNP A2NHM3 ARG 101 CONFLICT SEQRES 1 L 218 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 218 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 TYR CYS PHE GLN GLY SER HIS VAL PRO TRP THR PHE GLY SEQRES 9 L 218 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 H 221 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU ILE VAL ARG SEQRES 2 H 221 SER GLY ALA SER VAL LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE ASN ILE LYS ASP TYR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 221 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY TRP ILE ASP SEQRES 5 H 221 PRO GLU ASN GLY ASP ILE ALA TYR ALA PRO LYS PHE GLN SEQRES 6 H 221 GLY LYS ALA THR MET THR ALA ASP THR SER SER ASN THR SEQRES 7 H 221 ALA TYR LEU GLN LEU SER ARG LEU THR SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR PHE CYS ASN GLY ARG GLY GLY MET ILE THR SEQRES 9 H 221 THR ASP PHE PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 H 221 THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR SEQRES 11 H 221 PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET SEQRES 12 H 221 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 221 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 H 221 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER THR SEQRES 16 H 221 TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 H 221 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG HET PG4 L 301 13 HET PG4 L 302 13 HET CL L 303 1 HET CL L 304 1 HET PGE L 305 10 HET NA L 306 1 HET PEG L 307 7 HET PEG L 308 7 HET PEG L 309 7 HET PEG L 310 7 HET TRS L 311 8 HET CL H 301 1 HET CL H 302 1 HET CL H 303 1 HET 33O H 304 40 HET PEG H 305 7 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM 33O 3,6,9,12,15,18,21,24,27,30,33,36- HETNAM 2 33O DODECAOXAOCTATRIACONTANE-1,38-DIOL HETSYN TRS TRIS BUFFER HETSYN 33O TRIDECAETHYLENEGLYCOL FORMUL 3 PG4 2(C8 H18 O5) FORMUL 5 CL 5(CL 1-) FORMUL 7 PGE C6 H14 O4 FORMUL 8 NA NA 1+ FORMUL 9 PEG 5(C4 H10 O3) FORMUL 13 TRS C4 H12 N O3 1+ FORMUL 17 33O C26 H54 O14 FORMUL 19 HOH *343(H2 O) HELIX 1 AA1 GLU L 84 LEU L 88 5 5 HELIX 2 AA2 SER L 126 SER L 132 1 7 HELIX 3 AA3 LYS L 188 GLU L 192 1 5 HELIX 4 AA4 ASN H 28 TYR H 32 5 5 HELIX 5 AA5 PRO H 62 GLN H 65 5 4 HELIX 6 AA6 THR H 74 SER H 76 5 3 HELIX 7 AA7 THR H 87 THR H 91 5 5 HELIX 8 AA8 SER H 164 SER H 166 5 3 HELIX 9 AA9 PRO H 208 SER H 211 5 4 SHEET 1 AA1 4 MET L 4 THR L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 AA1 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 AA1 4 PHE L 67 GLY L 71 -1 N SER L 68 O LYS L 79 SHEET 1 AA2 6 SER L 10 VAL L 13 0 SHEET 2 AA2 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AA2 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA2 6 LEU L 38 GLN L 43 -1 N GLU L 39 O PHE L 94 SHEET 5 AA2 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA2 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA3 4 SER L 10 VAL L 13 0 SHEET 2 AA3 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AA3 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA3 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA4 4 THR L 119 PHE L 123 0 SHEET 2 AA4 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 AA4 4 TYR L 178 THR L 187 -1 O MET L 180 N LEU L 141 SHEET 4 AA4 4 VAL L 164 THR L 169 -1 N SER L 167 O SER L 181 SHEET 1 AA5 4 SER L 158 ARG L 160 0 SHEET 2 AA5 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 AA5 4 SER L 196 THR L 202 -1 O GLU L 200 N LYS L 152 SHEET 4 AA5 4 ILE L 210 ASN L 215 -1 O ILE L 210 N ALA L 201 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA6 4 THR H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AA6 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA7 6 GLU H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 115 VAL H 119 1 O THR H 116 N GLU H 10 SHEET 3 AA7 6 ALA H 92 GLY H 100 -1 N ALA H 92 O LEU H 117 SHEET 4 AA7 6 TYR H 33 GLN H 39 -1 N TYR H 33 O ARG H 99 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA7 6 ILE H 58 TYR H 60 -1 O ALA H 59 N TRP H 50 SHEET 1 AA8 4 GLU H 10 VAL H 12 0 SHEET 2 AA8 4 THR H 115 VAL H 119 1 O THR H 116 N GLU H 10 SHEET 3 AA8 4 ALA H 92 GLY H 100 -1 N ALA H 92 O LEU H 117 SHEET 4 AA8 4 PHE H 108 TRP H 111 -1 O PHE H 108 N GLY H 100 SHEET 1 AA9 4 SER H 128 LEU H 132 0 SHEET 2 AA9 4 MET H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 AA9 4 LEU H 182 PRO H 192 -1 O VAL H 191 N VAL H 144 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 188 SHEET 1 AB1 4 SER H 128 LEU H 132 0 SHEET 2 AB1 4 MET H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 AB1 4 LEU H 182 PRO H 192 -1 O VAL H 191 N VAL H 144 SHEET 4 AB1 4 VAL H 177 GLN H 179 -1 N GLN H 179 O LEU H 182 SHEET 1 AB2 3 THR H 159 TRP H 162 0 SHEET 2 AB2 3 THR H 202 HIS H 207 -1 O ASN H 204 N THR H 161 SHEET 3 AB2 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.00 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 4 CYS H 148 CYS H 203 1555 1555 2.03 LINK O ALA L 117 NA NA L 306 1555 1555 2.24 LINK OG1 THR L 119 NA NA L 306 1555 1555 2.66 LINK O ASN L 142 NA NA L 306 1555 1555 2.47 LINK O ASN L 143 NA NA L 306 1555 1555 2.46 LINK NA NA L 306 O HOH H 436 1555 4445 2.21 CISPEP 1 THR L 7 PRO L 8 0 -9.01 CISPEP 2 VAL L 99 PRO L 100 0 2.98 CISPEP 3 TYR L 145 PRO L 146 0 1.75 CISPEP 4 PHE H 154 PRO H 155 0 -8.12 CISPEP 5 GLU H 156 PRO H 157 0 0.85 CISPEP 6 TRP H 196 PRO H 197 0 6.73 SITE 1 AC1 8 GLN H 43 LEU L 9 TYR L 92 GLY L 105 SITE 2 AC1 8 LYS L 147 PG4 L 302 HOH L 545 HOH L 561 SITE 1 AC2 6 GLU H 42 LYS L 147 ILE L 149 TRP L 168 SITE 2 AC2 6 PG4 L 301 HOH L 498 SITE 1 AC3 2 LEU L 15 ARG L 82 SITE 1 AC4 2 33O H 304 ARG L 113 SITE 1 AC5 2 SER L 70 LYS L 79 SITE 1 AC6 6 HOH H 436 ALA L 117 PRO L 118 THR L 119 SITE 2 AC6 6 ASN L 142 ASN L 143 SITE 1 AC7 6 GLY L 71 SER L 72 ASP L 156 ARG L 193 SITE 2 AC7 6 ASN L 195 HOH L 401 SITE 1 AC8 3 LYS L 50 GLY L 62 GLU L 86 SITE 1 AC9 5 GLU H 42 ASN L 166 SER L 167 TRP L 168 SITE 2 AC9 5 HOH L 557 SITE 1 AD1 11 HIS L 31 SER L 32 SER L 97 HIS L 98 SITE 2 AD1 11 VAL L 99 ARG L 160 GLN L 161 ASN L 162 SITE 3 AD1 11 TRS L 311 HOH L 402 HOH L 467 SITE 1 AD2 4 ASN L 33 GLY L 96 PEG L 310 HOH L 402 SITE 1 AD3 2 TRP H 47 PHE L 103 SITE 1 AD4 4 SER H 164 ASN H 204 LYS H 213 HOH H 429 SITE 1 AD5 6 LYS H 151 GLY H 152 GLN H 179 TYR H 183 SITE 2 AD5 6 THR H 184 HOH H 542 SITE 1 AD6 28 MET H 143 ASN H 163 SER H 164 SER H 166 SITE 2 AD6 28 LEU H 167 GLY H 170 THR H 190 VAL H 191 SITE 3 AD6 28 THR H 195 THR H 200 THR H 202 LYS H 213 SITE 4 AD6 28 ASP H 215 HOH H 416 HOH H 419 HOH H 422 SITE 5 AD6 28 HOH H 436 HOH H 470 HOH H 528 HOH H 530 SITE 6 AD6 28 ASP L 115 ALA L 116 ALA L 117 ASN L 143 SITE 7 AD6 28 THR L 205 SER L 206 CL L 304 HOH L 405 SITE 1 AD7 3 PRO H 41 THR H 116 HOH H 556 CRYST1 129.374 50.408 75.169 90.00 115.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007730 0.000000 0.003662 0.00000 SCALE2 0.000000 0.019838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014721 0.00000