HEADER REPLICATION 09-JUN-14 4TPS TITLE SPORULATION INHIBITOR OF DNA REPLICATION, SIRA, IN COMPLEX WITH DOMAIN TITLE 2 I OF DNAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORULATION INHIBITOR OF REPLICATION PROTEIN SIRA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SIRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: DOMAIN I OF DNAA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SIRA, YNEE, YOXF, BSU17900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 12 ORGANISM_TAXID: 224308; SOURCE 13 STRAIN: 168; SOURCE 14 GENE: DNAA, DNAH, BSU00010; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS REPLICATION, SPORULATION, INHIBITORY COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.H.JAMESON,J.P.TURKENBURG,M.J.FOGG,A.GRAHL,A.J.WILKINSON REVDAT 4 03-APR-24 4TPS 1 SSBOND LINK REVDAT 3 10-SEP-14 4TPS 1 JRNL REVDAT 2 06-AUG-14 4TPS 1 AUTHOR REVDAT 1 30-JUL-14 4TPS 0 JRNL AUTH K.H.JAMESON,N.ROSTAMI,M.J.FOGG,J.P.TURKENBURG,A.GRAHL, JRNL AUTH 2 H.MURRAY,A.J.WILKINSON JRNL TITL STRUCTURE AND INTERACTIONS OF THE BACILLUS SUBTILIS JRNL TITL 2 SPORULATION INHIBITOR OF DNA REPLICATION, SIRA, WITH DOMAIN JRNL TITL 3 I OF DNAA. JRNL REF MOL.MICROBIOL. V. 93 975 2014 JRNL REFN ESSN 1365-2958 JRNL PMID 25041308 JRNL DOI 10.1111/MMI.12713 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 50178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.737 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3907 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3680 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5280 ; 1.670 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8484 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 5.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;33.642 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;13.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4327 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 949 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 4.084 ; 2.291 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1792 ; 4.076 ; 2.289 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2238 ; 4.782 ; 3.440 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2239 ; 4.785 ; 3.442 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 6.313 ; 2.921 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2114 ; 6.312 ; 2.920 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3039 ; 6.912 ; 4.134 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4622 ; 6.611 ;20.401 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4505 ; 6.448 ;19.938 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7587 ; 4.968 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 95 ;29.918 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7682 ;15.549 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 141 C 2 141 4343 0.16 0.05 REMARK 3 2 B 0 80 D 0 80 2516 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 82.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 200 MM NH4 REMARK 280 ACETATE, 25 % (W/V) PEG 3350, 1% (V/V) DMF, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.34250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLN A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 142 REMARK 465 LYS A 143 REMARK 465 GLU A 144 REMARK 465 ARG A 145 REMARK 465 ASN A 146 REMARK 465 PHE A 147 REMARK 465 VAL A 148 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLN B 82 REMARK 465 MET C -5 REMARK 465 GLN C -4 REMARK 465 ALA C -3 REMARK 465 GLY C -2 REMARK 465 PRO C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 VAL C 142 REMARK 465 LYS C 143 REMARK 465 GLU C 144 REMARK 465 ARG C 145 REMARK 465 ASN C 146 REMARK 465 PHE C 147 REMARK 465 VAL C 148 REMARK 465 GLN D 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 51 OE1 GLU B 55 1.94 REMARK 500 O HOH C 315 O HOH C 320 2.10 REMARK 500 O HOH C 386 O HOH C 387 2.12 REMARK 500 OD1 ASN A 16 O HOH A 402 2.15 REMARK 500 O HOH C 327 O HOH C 330 2.17 REMARK 500 OE1 GLU A 12 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 64 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 MET C 100 CG - SD - CE ANGL. DEV. = -20.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 34 -54.42 -136.48 REMARK 500 ASP A 78 -102.16 50.05 REMARK 500 GLU A 98 -107.24 53.78 REMARK 500 ASP C 78 -104.03 53.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 375 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 404 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH D 135 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME C 201 DBREF 4TPS A 1 148 UNP P45707 SIRA_BACSU 1 148 DBREF 4TPS B 1 82 UNP P05648 DNAA_BACSU 1 82 DBREF 4TPS C 1 148 UNP P45707 SIRA_BACSU 1 148 DBREF 4TPS D 1 82 UNP P05648 DNAA_BACSU 1 82 SEQADV 4TPS MET A -5 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLN A -4 UNP P45707 EXPRESSION TAG SEQADV 4TPS ALA A -3 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLY A -2 UNP P45707 EXPRESSION TAG SEQADV 4TPS PRO A -1 UNP P45707 EXPRESSION TAG SEQADV 4TPS ALA A 0 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLY B -2 UNP P05648 EXPRESSION TAG SEQADV 4TPS PRO B -1 UNP P05648 EXPRESSION TAG SEQADV 4TPS ALA B 0 UNP P05648 EXPRESSION TAG SEQADV 4TPS MET C -5 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLN C -4 UNP P45707 EXPRESSION TAG SEQADV 4TPS ALA C -3 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLY C -2 UNP P45707 EXPRESSION TAG SEQADV 4TPS PRO C -1 UNP P45707 EXPRESSION TAG SEQADV 4TPS ALA C 0 UNP P45707 EXPRESSION TAG SEQADV 4TPS GLY D -2 UNP P05648 EXPRESSION TAG SEQADV 4TPS PRO D -1 UNP P05648 EXPRESSION TAG SEQADV 4TPS ALA D 0 UNP P05648 EXPRESSION TAG SEQRES 1 A 154 MET GLN ALA GLY PRO ALA MET GLU ARG HIS TYR TYR THR SEQRES 2 A 154 TYR LEU ILE LYS GLU GLU PHE ALA ASN HIS TYR PHE GLY SEQRES 3 A 154 ARG GLU SER VAL MET PHE GLU LEU PHE GLN ASP TYR HIS SEQRES 4 A 154 TRP THR SER LEU GLU LYS GLN GLN TYR GLU MET THR GLU SEQRES 5 A 154 LYS GLN ILE GLN TYR ILE THR GLN PRO ILE PRO ILE LEU SEQRES 6 A 154 HIS MET HIS GLN ARG LEU LYS MET ASN LEU ASN LYS THR SEQRES 7 A 154 ASP TYR ARG GLN LEU ASP TYR ILE TYR ARG ILE ALA LEU SEQRES 8 A 154 PRO LYS ALA LYS GLY HIS ALA THR PHE MET MET LYS GLU SEQRES 9 A 154 HIS MET ILE GLU ILE VAL ALA SER GLY ASP TYR GLU ALA SEQRES 10 A 154 GLU THR ILE PHE PHE GLU VAL LEU ARG LYS VAL SER PRO SEQRES 11 A 154 CYS PHE LEU ALA MET ASP PHE ASN SER LYS ARG TYR GLY SEQRES 12 A 154 TRP LEU ASN PRO VAL LYS GLU ARG ASN PHE VAL SEQRES 1 B 85 GLY PRO ALA MET GLU ASN ILE LEU ASP LEU TRP ASN GLN SEQRES 2 B 85 ALA LEU ALA GLN ILE GLU LYS LYS LEU SER LYS PRO SER SEQRES 3 B 85 PHE GLU THR TRP MET LYS SER THR LYS ALA HIS SER LEU SEQRES 4 B 85 GLN GLY ASP THR LEU THR ILE THR ALA PRO ASN GLU PHE SEQRES 5 B 85 ALA ARG ASP TRP LEU GLU SER ARG TYR LEU HIS LEU ILE SEQRES 6 B 85 ALA ASP THR ILE TYR GLU LEU THR GLY GLU GLU LEU SER SEQRES 7 B 85 ILE LYS PHE VAL ILE PRO GLN SEQRES 1 C 154 MET GLN ALA GLY PRO ALA MET GLU ARG HIS TYR TYR THR SEQRES 2 C 154 TYR LEU ILE LYS GLU GLU PHE ALA ASN HIS TYR PHE GLY SEQRES 3 C 154 ARG GLU SER VAL MET PHE GLU LEU PHE GLN ASP TYR HIS SEQRES 4 C 154 TRP THR SER LEU GLU LYS GLN GLN TYR GLU MET THR GLU SEQRES 5 C 154 LYS GLN ILE GLN TYR ILE THR GLN PRO ILE PRO ILE LEU SEQRES 6 C 154 HIS MET HIS GLN ARG LEU LYS MET ASN LEU ASN LYS THR SEQRES 7 C 154 ASP TYR ARG GLN LEU ASP TYR ILE TYR ARG ILE ALA LEU SEQRES 8 C 154 PRO LYS ALA LYS GLY HIS ALA THR PHE MET MET LYS GLU SEQRES 9 C 154 HIS MET ILE GLU ILE VAL ALA SER GLY ASP TYR GLU ALA SEQRES 10 C 154 GLU THR ILE PHE PHE GLU VAL LEU ARG LYS VAL SER PRO SEQRES 11 C 154 CYS PHE LEU ALA MET ASP PHE ASN SER LYS ARG TYR GLY SEQRES 12 C 154 TRP LEU ASN PRO VAL LYS GLU ARG ASN PHE VAL SEQRES 1 D 85 GLY PRO ALA MET GLU ASN ILE LEU ASP LEU TRP ASN GLN SEQRES 2 D 85 ALA LEU ALA GLN ILE GLU LYS LYS LEU SER LYS PRO SER SEQRES 3 D 85 PHE GLU THR TRP MET LYS SER THR LYS ALA HIS SER LEU SEQRES 4 D 85 GLN GLY ASP THR LEU THR ILE THR ALA PRO ASN GLU PHE SEQRES 5 D 85 ALA ARG ASP TRP LEU GLU SER ARG TYR LEU HIS LEU ILE SEQRES 6 D 85 ALA ASP THR ILE TYR GLU LEU THR GLY GLU GLU LEU SER SEQRES 7 D 85 ILE LYS PHE VAL ILE PRO GLN HET BME A 201 4 HET ACT A 202 4 HET BME C 201 4 HETNAM BME BETA-MERCAPTOETHANOL HETNAM ACT ACETATE ION FORMUL 5 BME 2(C2 H6 O S) FORMUL 6 ACT C2 H3 O2 1- FORMUL 8 HOH *295(H2 O) HELIX 1 AA1 LYS A 11 TYR A 18 1 8 HELIX 2 AA2 ARG A 21 TRP A 34 1 14 HELIX 3 AA3 GLU A 38 ILE A 52 1 15 HELIX 4 AA4 PRO A 57 ASN A 70 1 14 HELIX 5 AA5 PRO A 86 ALA A 88 5 3 HELIX 6 AA6 TYR A 109 SER A 123 1 15 HELIX 7 AA7 MET B 1 LYS B 17 1 17 HELIX 8 AA8 SER B 20 MET B 28 1 9 HELIX 9 AA9 ASN B 47 TYR B 58 1 12 HELIX 10 AB1 TYR B 58 GLY B 71 1 14 HELIX 11 AB2 LYS C 11 PHE C 19 1 9 HELIX 12 AB3 GLU C 22 THR C 35 1 14 HELIX 13 AB4 GLU C 38 ILE C 52 1 15 HELIX 14 AB5 PRO C 57 LEU C 69 1 13 HELIX 15 AB6 PRO C 86 ALA C 88 5 3 HELIX 16 AB7 TYR C 109 SER C 123 1 15 HELIX 17 AB8 PRO D -1 LYS D 17 1 19 HELIX 18 AB9 SER D 20 MET D 28 1 9 HELIX 19 AC1 ASN D 47 TYR D 58 1 12 HELIX 20 AC2 TYR D 58 GLY D 71 1 14 SHEET 1 AA1 6 THR A 53 GLN A 54 0 SHEET 2 AA1 6 ARG A 3 ILE A 10 -1 N LEU A 9 O GLN A 54 SHEET 3 AA1 6 MET A 100 GLY A 107 -1 O ILE A 101 N THR A 7 SHEET 4 AA1 6 GLY A 90 LYS A 97 -1 N LYS A 97 O MET A 100 SHEET 5 AA1 6 ILE A 80 ALA A 84 -1 N TYR A 81 O PHE A 94 SHEET 6 AA1 6 ASP A 73 LEU A 77 -1 N LEU A 77 O ILE A 80 SHEET 1 AA2 4 THR A 53 GLN A 54 0 SHEET 2 AA2 4 ARG A 3 ILE A 10 -1 N LEU A 9 O GLN A 54 SHEET 3 AA2 4 PHE A 126 ASP A 130 -1 O MET A 129 N TYR A 6 SHEET 4 AA2 4 ARG A 135 TRP A 138 -1 O ARG A 135 N ASP A 130 SHEET 1 AA3 3 LYS B 32 GLN B 37 0 SHEET 2 AA3 3 THR B 40 THR B 44 -1 O THR B 44 N LYS B 32 SHEET 3 AA3 3 SER B 75 VAL B 79 1 O SER B 75 N LEU B 41 SHEET 1 AA4 6 THR C 53 GLN C 54 0 SHEET 2 AA4 6 ARG C 3 ILE C 10 -1 N LEU C 9 O GLN C 54 SHEET 3 AA4 6 ILE C 101 GLY C 107 -1 O ILE C 103 N TYR C 5 SHEET 4 AA4 6 GLY C 90 MET C 96 -1 N MET C 95 O GLU C 102 SHEET 5 AA4 6 ILE C 80 ALA C 84 -1 N TYR C 81 O PHE C 94 SHEET 6 AA4 6 ASP C 73 LEU C 77 -1 N LEU C 77 O ILE C 80 SHEET 1 AA5 4 THR C 53 GLN C 54 0 SHEET 2 AA5 4 ARG C 3 ILE C 10 -1 N LEU C 9 O GLN C 54 SHEET 3 AA5 4 PHE C 126 MET C 129 -1 O MET C 129 N TYR C 6 SHEET 4 AA5 4 TYR C 136 TRP C 138 -1 O GLY C 137 N ALA C 128 SHEET 1 AA6 3 LYS D 32 GLN D 37 0 SHEET 2 AA6 3 THR D 40 THR D 44 -1 O THR D 44 N LYS D 32 SHEET 3 AA6 3 SER D 75 VAL D 79 1 O SER D 75 N LEU D 41 LINK SG CYS A 125 S2 BME A 201 1555 1555 2.03 LINK SG CYS C 125 S2 BME C 201 1555 1555 1.98 SITE 1 AC1 4 ALA A 15 PRO A 124 CYS A 125 HOH A 400 SITE 1 AC2 4 HIS A 4 ASN A 132 HOH A 303 HOH A 312 SITE 1 AC3 8 ARG A 64 MET A 67 ALA C 15 PHE C 19 SITE 2 AC3 8 PRO C 124 CYS C 125 ASN C 140 HOH C 302 CRYST1 77.287 34.685 84.735 90.00 102.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012939 0.000000 0.002772 0.00000 SCALE2 0.000000 0.028831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012069 0.00000