HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-JUN-14 4TPT TITLE CRYSTAL STRUCTURE OF THE HUMAN LIMK2 KINASE DOMAIN IN COMPLEX WITH A TITLE 2 NON-ATP COMPETITIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 330-632); COMPND 5 SYNONYM: LIMK-2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIMK2; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS LIMK2 KINASE, DFG INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.GOODWIN,G.CIANCHETTA,B.L.HAMMAN,H.A.BURGOON,J.HEALY,S.MABON, AUTHOR 2 E.D.STROBEL,S.WANG,D.B.RAWLINS REVDAT 3 27-DEC-23 4TPT 1 SOURCE KEYWDS REMARK ATOM REVDAT 2 28-JAN-15 4TPT 1 JRNL REVDAT 1 22-OCT-14 4TPT 0 JRNL AUTH N.C.GOODWIN,G.CIANCHETTA,H.A.BURGOON,J.HEALY,R.MABON, JRNL AUTH 2 E.D.STROBEL,J.ALLEN,S.WANG,B.D.HAMMAN,D.B.RAWLINS JRNL TITL DISCOVERY OF A TYPE III INHIBITOR OF LIM KINASE 2 THAT BINDS JRNL TITL 2 IN A DFG-OUT CONFORMATION. JRNL REF ACS MED.CHEM.LETT. V. 6 53 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 25589930 JRNL DOI 10.1021/ML500242Y REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 19409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -2.08000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.297 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4589 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4242 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6209 ; 0.932 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9891 ; 0.719 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 5.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;34.888 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 811 ;13.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4965 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 924 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 973 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4150 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2270 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2442 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.035 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3636 ; 1.048 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1124 ; 0.174 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4484 ; 1.338 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2158 ; 1.895 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1725 ; 2.803 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 407 REMARK 3 RESIDUE RANGE : B 330 B 339 REMARK 3 ORIGIN FOR THE GROUP (A): 15.571 -9.091 17.955 REMARK 3 T TENSOR REMARK 3 T11: -0.0052 T22: -0.0152 REMARK 3 T33: 0.1190 T12: 0.0790 REMARK 3 T13: 0.0298 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 3.8566 L22: 2.7747 REMARK 3 L33: 3.0782 L12: 1.0509 REMARK 3 L13: 1.4165 L23: 0.6170 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.1642 S13: -0.5789 REMARK 3 S21: 0.0516 S22: 0.1505 S23: -0.3702 REMARK 3 S31: 0.3378 S32: 0.4819 S33: -0.2063 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 631 REMARK 3 RESIDUE RANGE : B 340 B 407 REMARK 3 RESIDUE RANGE : A 330 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): -1.114 8.709 11.898 REMARK 3 T TENSOR REMARK 3 T11: -0.0944 T22: 0.0294 REMARK 3 T33: 0.0172 T12: 0.0367 REMARK 3 T13: 0.0424 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.9283 L22: 3.3544 REMARK 3 L33: 2.1963 L12: 1.2250 REMARK 3 L13: 1.2213 L23: 0.9774 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: 0.1535 S13: 0.2281 REMARK 3 S21: -0.2591 S22: 0.0912 S23: 0.2754 REMARK 3 S31: -0.2612 S32: -0.1314 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 408 B 632 REMARK 3 ORIGIN FOR THE GROUP (A): 6.271 12.040 41.523 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0639 REMARK 3 T33: -0.0914 T12: 0.0366 REMARK 3 T13: 0.0834 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 2.7806 L22: 3.9025 REMARK 3 L33: 4.2382 L12: 0.3962 REMARK 3 L13: 0.6634 L23: -0.0424 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.3753 S13: -0.0393 REMARK 3 S21: 0.6610 S22: -0.0437 S23: 0.1426 REMARK 3 S31: -0.1343 S32: -0.3685 S33: 0.0646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 84.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PURIFIED PROTEIN WAS USED IN REMARK 280 CRYSTALLISATION TRIALS EMPLOYING BOTH, A STANDARD SCREEN WITH REMARK 280 APPROXIMATELY 1200 DIFFERENT CONDITIONS, AS WELL AS REMARK 280 CRYSTALLISATION CONDITIONS IDENTIFIED USING LITERATURE DATA., REMARK 280 BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.95150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 478 REMARK 465 GLU A 479 REMARK 465 ARG A 480 REMARK 465 LYS A 481 REMARK 465 ARG A 482 REMARK 465 ALA A 483 REMARK 465 PRO A 484 REMARK 465 MET A 485 REMARK 465 GLU A 486 REMARK 465 LYS A 487 REMARK 465 ALA A 488 REMARK 465 THR A 489 REMARK 465 THR A 490 REMARK 465 LYS A 491 REMARK 465 LYS A 492 REMARK 465 ARG A 493 REMARK 465 THR A 494 REMARK 465 LEU A 495 REMARK 465 ARG A 496 REMARK 465 LYS A 497 REMARK 465 ASN A 498 REMARK 465 ASP A 499 REMARK 465 ARG A 500 REMARK 465 LEU A 632 REMARK 465 GLU B 478 REMARK 465 GLU B 479 REMARK 465 ARG B 480 REMARK 465 LYS B 481 REMARK 465 ARG B 482 REMARK 465 ALA B 483 REMARK 465 PRO B 484 REMARK 465 MET B 485 REMARK 465 GLU B 486 REMARK 465 LYS B 487 REMARK 465 ALA B 488 REMARK 465 THR B 489 REMARK 465 THR B 490 REMARK 465 LYS B 491 REMARK 465 LYS B 492 REMARK 465 ARG B 493 REMARK 465 THR B 494 REMARK 465 LEU B 495 REMARK 465 ARG B 496 REMARK 465 LYS B 497 REMARK 465 ASN B 498 REMARK 465 ASP B 499 REMARK 465 ARG B 500 REMARK 465 LYS B 501 REMARK 465 LYS B 502 REMARK 465 ARG B 503 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 339 CG CD CE NZ REMARK 480 LYS A 355 CG CD CE NZ REMARK 480 GLU A 367 CG CD OE1 OE2 REMARK 480 GLU A 368 CD OE1 OE2 REMARK 480 LYS A 371 CG CD CE NZ REMARK 480 ASP A 398 CG OD1 OD2 REMARK 480 LYS A 399 CG CD CE NZ REMARK 480 MET A 420 SD CE REMARK 480 LYS A 521 CD CE NZ REMARK 480 LYS A 566 CD CE NZ REMARK 480 LYS A 596 CD CE NZ REMARK 480 MET A 628 CG SD CE REMARK 480 GLU B 367 CG CD OE1 OE2 REMARK 480 GLU B 368 CG CD OE1 OE2 REMARK 480 LYS B 371 CG CD CE NZ REMARK 480 LYS B 390 CD CE NZ REMARK 480 LYS B 397 CD CE NZ REMARK 480 LYS B 399 CG CD CE NZ REMARK 480 MET B 420 CG SD CE REMARK 480 LYS B 566 CD CE NZ REMARK 480 GLU B 589 CD OE1 OE2 REMARK 480 GLU B 610 CG CD OE1 OE2 REMARK 480 MET B 628 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 422 103.01 -51.13 REMARK 500 ARG A 450 -7.22 74.10 REMARK 500 ASP A 451 36.58 -142.70 REMARK 500 ASP A 524 -156.96 -137.94 REMARK 500 CYS A 549 -35.66 -143.48 REMARK 500 PHE A 556 -2.15 76.21 REMARK 500 ALA A 575 -14.20 73.59 REMARK 500 MET A 628 20.92 -76.36 REMARK 500 ARG B 450 -32.37 86.02 REMARK 500 THR B 505 136.74 -176.57 REMARK 500 ASP B 524 -155.50 -137.18 REMARK 500 ALA B 545 32.21 -81.25 REMARK 500 ASN B 559 84.53 -68.46 REMARK 500 ALA B 575 -14.85 77.54 REMARK 500 TYR B 630 -62.00 -151.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 35H A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 35H B 701 DBREF 4TPT A 330 632 UNP P53671 LIMK2_HUMAN 330 632 DBREF 4TPT B 330 632 UNP P53671 LIMK2_HUMAN 330 632 SEQRES 1 A 303 ASP LEU ILE HIS GLY GLU VAL LEU GLY LYS GLY PHE PHE SEQRES 2 A 303 GLY GLN ALA ILE LYS VAL THR HIS LYS ALA THR GLY LYS SEQRES 3 A 303 VAL MET VAL MET LYS GLU LEU ILE ARG CYS ASP GLU GLU SEQRES 4 A 303 THR GLN LYS THR PHE LEU THR GLU VAL LYS VAL MET ARG SEQRES 5 A 303 SER LEU ASP HIS PRO ASN VAL LEU LYS PHE ILE GLY VAL SEQRES 6 A 303 LEU TYR LYS ASP LYS LYS LEU ASN LEU LEU THR GLU TYR SEQRES 7 A 303 ILE GLU GLY GLY THR LEU LYS ASP PHE LEU ARG SER MET SEQRES 8 A 303 ASP PRO PHE PRO TRP GLN GLN LYS VAL ARG PHE ALA LYS SEQRES 9 A 303 GLY ILE ALA SER GLY MET ALA TYR LEU HIS SER MET CYS SEQRES 10 A 303 ILE ILE HIS ARG ASP LEU ASN SER HIS ASN CYS LEU ILE SEQRES 11 A 303 LYS LEU ASP LYS THR VAL VAL VAL ALA ASP PHE GLY LEU SEQRES 12 A 303 SER ARG LEU ILE VAL GLU GLU ARG LYS ARG ALA PRO MET SEQRES 13 A 303 GLU LYS ALA THR THR LYS LYS ARG THR LEU ARG LYS ASN SEQRES 14 A 303 ASP ARG LYS LYS ARG TYR THR VAL VAL GLY ASN PRO TYR SEQRES 15 A 303 TRP MET ALA PRO GLU MET LEU ASN GLY LYS SER TYR ASP SEQRES 16 A 303 GLU THR VAL ASP ILE PHE SER PHE GLY ILE VAL LEU CYS SEQRES 17 A 303 GLU ILE ILE GLY GLN VAL TYR ALA ASP PRO ASP CYS LEU SEQRES 18 A 303 PRO ARG THR LEU ASP PHE GLY LEU ASN VAL LYS LEU PHE SEQRES 19 A 303 TRP GLU LYS PHE VAL PRO THR ASP CYS PRO PRO ALA PHE SEQRES 20 A 303 PHE PRO LEU ALA ALA ILE CYS CYS ARG LEU GLU PRO GLU SEQRES 21 A 303 SER ARG PRO ALA PHE SER LYS LEU GLU ASP SER PHE GLU SEQRES 22 A 303 ALA LEU SER LEU TYR LEU GLY GLU LEU GLY ILE PRO LEU SEQRES 23 A 303 PRO ALA GLU LEU GLU GLU LEU ASP HIS THR VAL SER MET SEQRES 24 A 303 GLN TYR GLY LEU SEQRES 1 B 303 ASP LEU ILE HIS GLY GLU VAL LEU GLY LYS GLY PHE PHE SEQRES 2 B 303 GLY GLN ALA ILE LYS VAL THR HIS LYS ALA THR GLY LYS SEQRES 3 B 303 VAL MET VAL MET LYS GLU LEU ILE ARG CYS ASP GLU GLU SEQRES 4 B 303 THR GLN LYS THR PHE LEU THR GLU VAL LYS VAL MET ARG SEQRES 5 B 303 SER LEU ASP HIS PRO ASN VAL LEU LYS PHE ILE GLY VAL SEQRES 6 B 303 LEU TYR LYS ASP LYS LYS LEU ASN LEU LEU THR GLU TYR SEQRES 7 B 303 ILE GLU GLY GLY THR LEU LYS ASP PHE LEU ARG SER MET SEQRES 8 B 303 ASP PRO PHE PRO TRP GLN GLN LYS VAL ARG PHE ALA LYS SEQRES 9 B 303 GLY ILE ALA SER GLY MET ALA TYR LEU HIS SER MET CYS SEQRES 10 B 303 ILE ILE HIS ARG ASP LEU ASN SER HIS ASN CYS LEU ILE SEQRES 11 B 303 LYS LEU ASP LYS THR VAL VAL VAL ALA ASP PHE GLY LEU SEQRES 12 B 303 SER ARG LEU ILE VAL GLU GLU ARG LYS ARG ALA PRO MET SEQRES 13 B 303 GLU LYS ALA THR THR LYS LYS ARG THR LEU ARG LYS ASN SEQRES 14 B 303 ASP ARG LYS LYS ARG TYR THR VAL VAL GLY ASN PRO TYR SEQRES 15 B 303 TRP MET ALA PRO GLU MET LEU ASN GLY LYS SER TYR ASP SEQRES 16 B 303 GLU THR VAL ASP ILE PHE SER PHE GLY ILE VAL LEU CYS SEQRES 17 B 303 GLU ILE ILE GLY GLN VAL TYR ALA ASP PRO ASP CYS LEU SEQRES 18 B 303 PRO ARG THR LEU ASP PHE GLY LEU ASN VAL LYS LEU PHE SEQRES 19 B 303 TRP GLU LYS PHE VAL PRO THR ASP CYS PRO PRO ALA PHE SEQRES 20 B 303 PHE PRO LEU ALA ALA ILE CYS CYS ARG LEU GLU PRO GLU SEQRES 21 B 303 SER ARG PRO ALA PHE SER LYS LEU GLU ASP SER PHE GLU SEQRES 22 B 303 ALA LEU SER LEU TYR LEU GLY GLU LEU GLY ILE PRO LEU SEQRES 23 B 303 PRO ALA GLU LEU GLU GLU LEU ASP HIS THR VAL SER MET SEQRES 24 B 303 GLN TYR GLY LEU HET 35H A 701 31 HET 35H B 701 31 HETNAM 35H N-{4-[(1S)-1,2-DIHYDROXYETHYL]BENZYL}-N-METHYL-4- HETNAM 2 35H (PHENYLSULFAMOYL)BENZAMIDE FORMUL 3 35H 2(C23 H24 N2 O5 S) FORMUL 5 HOH *30(H2 O) HELIX 1 AA1 ASP A 366 GLU A 376 1 11 HELIX 2 AA2 GLU A 376 LEU A 383 1 8 HELIX 3 AA3 LEU A 413 ARG A 418 1 6 HELIX 4 AA4 PRO A 424 MET A 445 1 22 HELIX 5 AA5 ALA A 514 ASN A 519 1 6 HELIX 6 AA6 THR A 526 GLN A 542 1 17 HELIX 7 AA7 ASN A 559 VAL A 568 1 10 HELIX 8 AA8 ALA A 575 CYS A 584 1 10 HELIX 9 AA9 GLU A 587 ARG A 591 5 5 HELIX 10 AB1 ALA A 593 GLY A 609 1 17 HELIX 11 AB2 PRO A 616 GLY A 631 1 16 HELIX 12 AB3 ASP B 366 GLU B 376 1 11 HELIX 13 AB4 GLU B 376 LEU B 383 1 8 HELIX 14 AB5 LEU B 413 SER B 419 1 7 HELIX 15 AB6 PRO B 424 MET B 445 1 22 HELIX 16 AB7 ALA B 514 ASN B 519 1 6 HELIX 17 AB8 GLU B 525 GLN B 542 1 18 HELIX 18 AB9 ASN B 559 VAL B 568 1 10 HELIX 19 AC1 ALA B 575 CYS B 584 1 10 HELIX 20 AC2 GLU B 587 ARG B 591 5 5 HELIX 21 AC3 ALA B 593 GLY B 609 1 17 HELIX 22 AC4 PRO B 616 GLN B 629 1 14 SHEET 1 AA1 5 LEU A 331 LEU A 337 0 SHEET 2 AA1 5 ALA B 345 HIS B 350 -1 O ALA B 345 N LEU A 337 SHEET 3 AA1 5 VAL B 356 GLU B 361 -1 O MET B 357 N VAL B 348 SHEET 4 AA1 5 LEU B 401 GLU B 406 -1 O LEU B 403 N LYS B 360 SHEET 5 AA1 5 PHE B 391 TYR B 396 -1 N LEU B 395 O ASN B 402 SHEET 1 AA2 5 PHE A 391 TYR A 396 0 SHEET 2 AA2 5 LEU A 401 GLU A 406 -1 O ASN A 402 N LEU A 395 SHEET 3 AA2 5 VAL A 356 GLU A 361 -1 N LYS A 360 O LEU A 403 SHEET 4 AA2 5 ALA A 345 HIS A 350 -1 N VAL A 348 O MET A 357 SHEET 5 AA2 5 LEU B 331 LEU B 337 -1 O GLY B 334 N LYS A 347 SHEET 1 AA3 3 GLY A 410 THR A 412 0 SHEET 2 AA3 3 CYS A 457 LYS A 460 -1 O ILE A 459 N GLY A 411 SHEET 3 AA3 3 VAL A 465 VAL A 467 -1 O VAL A 466 N LEU A 458 SHEET 1 AA4 2 ILE A 447 ILE A 448 0 SHEET 2 AA4 2 LEU A 475 ILE A 476 -1 O LEU A 475 N ILE A 448 SHEET 1 AA5 3 GLY B 410 THR B 412 0 SHEET 2 AA5 3 CYS B 457 LYS B 460 -1 O ILE B 459 N GLY B 411 SHEET 3 AA5 3 VAL B 465 VAL B 467 -1 O VAL B 466 N LEU B 458 SHEET 1 AA6 2 ILE B 447 ILE B 448 0 SHEET 2 AA6 2 LEU B 475 ILE B 476 -1 O LEU B 475 N ILE B 448 SSBOND 1 CYS A 365 CYS B 549 1555 1555 2.04 SSBOND 2 CYS A 549 CYS B 365 1555 1555 2.02 SITE 1 AC1 14 GLU A 361 ILE A 363 MET A 380 LEU A 383 SITE 2 AC1 14 VAL A 388 LEU A 389 PHE A 391 THR A 405 SITE 3 AC1 14 VAL A 467 ALA A 468 ASP A 469 PHE A 470 SITE 4 AC1 14 LEU A 472 ARG A 474 SITE 1 AC2 16 LYS B 360 GLU B 361 LEU B 362 ILE B 363 SITE 2 AC2 16 MET B 380 LEU B 383 VAL B 388 LEU B 389 SITE 3 AC2 16 PHE B 391 THR B 405 HIS B 449 VAL B 467 SITE 4 AC2 16 ASP B 469 PHE B 470 LEU B 472 ARG B 474 CRYST1 51.569 77.903 86.387 90.00 100.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019391 0.000000 0.003714 0.00000 SCALE2 0.000000 0.012836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011786 0.00000