HEADER GENE REGULATION 17-JUN-14 4TRQ TITLE CRYSTAL STRUCTURE OF SAC3/THP1/SEM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR MRNA EXPORT PROTEIN SAC3; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: LEUCINE PERMEASE TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR MRNA EXPORT PROTEIN THP1; COMPND 8 CHAIN: B, E; COMPND 9 SYNONYM: BUD SITE SELECTION PROTEIN 29; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 26S PROTEASOME COMPLEX SUBUNIT SEM1; COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SAC3, LEP1, YDR159W, YD8358.13; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PST44; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: THP1, BUD29, YOL072W, O1140; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: RIL; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PST44; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 25 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 26 ORGANISM_TAXID: 559292; SOURCE 27 STRAIN: ATCC 204508 / S288C; SOURCE 28 GENE: SEM1, DSH1, YDR363W-A; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 30 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: RIL; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PST44 KEYWDS PCI DOMAIN, TREX-2, GENE EXPRESSION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.HELLERSCHMIED,S.SCHNEIDER,A.KOHLER,T.CLAUSEN REVDAT 3 20-DEC-23 4TRQ 1 REMARK REVDAT 2 09-SEP-15 4TRQ 1 JRNL REVDAT 1 26-AUG-15 4TRQ 0 JRNL AUTH M.SCHNEIDER,D.HELLERSCHMIED,T.SCHUBERT,S.AMLACHER, JRNL AUTH 2 V.VINAYACHANDRAN,R.REJA,B.F.PUGH,T.CLAUSEN,A.KOHLER JRNL TITL THE NUCLEAR PORE-ASSOCIATED TREX-2 COMPLEX EMPLOYS MEDIATOR JRNL TITL 2 TO REGULATE GENE EXPRESSION. JRNL REF CELL V. 162 1016 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26317468 JRNL DOI 10.1016/J.CELL.2015.07.059 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 39366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6137 - 7.4626 0.96 2815 155 0.1886 0.2246 REMARK 3 2 7.4626 - 5.9269 0.97 2714 144 0.2138 0.2211 REMARK 3 3 5.9269 - 5.1787 0.99 2681 165 0.1848 0.2362 REMARK 3 4 5.1787 - 4.7057 0.98 2683 139 0.1509 0.1926 REMARK 3 5 4.7057 - 4.3686 0.97 2640 119 0.1408 0.1809 REMARK 3 6 4.3686 - 4.1112 0.99 2664 152 0.1495 0.2045 REMARK 3 7 4.1112 - 3.9054 0.99 2680 125 0.1722 0.2135 REMARK 3 8 3.9054 - 3.7355 0.99 2668 141 0.1894 0.2307 REMARK 3 9 3.7355 - 3.5917 0.99 2657 136 0.2441 0.3183 REMARK 3 10 3.5917 - 3.4678 0.97 2601 130 0.2352 0.2844 REMARK 3 11 3.4678 - 3.3594 0.99 2649 126 0.2386 0.2998 REMARK 3 12 3.3594 - 3.2634 1.00 2648 146 0.2485 0.3118 REMARK 3 13 3.2634 - 3.1775 1.00 2635 149 0.2767 0.3237 REMARK 3 14 3.1775 - 3.1000 1.00 2655 149 0.2913 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 10756 REMARK 3 ANGLE : 1.271 14580 REMARK 3 CHIRALITY : 0.048 1618 REMARK 3 PLANARITY : 0.007 1874 REMARK 3 DIHEDRAL : 17.542 4060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -61.6522 -2.4597 44.9741 REMARK 3 T TENSOR REMARK 3 T11: 0.3920 T22: 0.2408 REMARK 3 T33: 0.2716 T12: -0.0235 REMARK 3 T13: 0.0985 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.3786 L22: 0.1767 REMARK 3 L33: 0.2710 L12: -0.1613 REMARK 3 L13: -0.0974 L23: 0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0288 S13: -0.0188 REMARK 3 S21: 0.0870 S22: -0.0489 S23: -0.0155 REMARK 3 S31: 0.0983 S32: -0.1358 S33: -0.0181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39394 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.608 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : 0.74300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3T5V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M LI2SO4, 10% PEG-8.000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.18350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.87050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.87050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.09175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.87050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.87050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 201.27525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.87050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.87050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.09175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.87050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.87050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 201.27525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 134.18350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 42 REMARK 465 TRP C 43 REMARK 465 ALA C 44 REMARK 465 ASN C 45 REMARK 465 GLY C 46 REMARK 465 GLU C 47 REMARK 465 THR C 48 REMARK 465 ILE C 49 REMARK 465 LYS C 50 REMARK 465 SER C 51 REMARK 465 ASN C 52 REMARK 465 THR F 42 REMARK 465 TRP F 43 REMARK 465 ALA F 44 REMARK 465 ASN F 45 REMARK 465 GLY F 46 REMARK 465 GLU F 47 REMARK 465 THR F 48 REMARK 465 ILE F 49 REMARK 465 LYS F 50 REMARK 465 SER F 51 REMARK 465 ASN F 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 490 ND2 ASN A 494 2.02 REMARK 500 NZ LYS E 283 OE1 GLU F 62 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 86 O PHE F 38 5445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 404 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 LEU D 331 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 PRO D 471 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 254 -130.84 -75.92 REMARK 500 PRO A 258 -75.28 -47.35 REMARK 500 SER A 279 83.21 49.69 REMARK 500 SER A 300 52.17 -112.44 REMARK 500 SER A 330 168.17 169.87 REMARK 500 GLN A 332 71.28 66.82 REMARK 500 SER A 355 8.53 -68.32 REMARK 500 THR A 358 128.94 -173.56 REMARK 500 ILE A 374 -35.74 49.64 REMARK 500 LEU A 482 54.10 31.86 REMARK 500 GLU A 520 63.45 39.79 REMARK 500 CYS A 531 -50.04 -21.45 REMARK 500 LYS B 205 -55.36 -26.32 REMARK 500 SER B 234 18.63 59.29 REMARK 500 PRO B 254 95.40 -63.50 REMARK 500 LEU B 255 36.32 -65.32 REMARK 500 PRO B 286 -19.49 -46.45 REMARK 500 HIS B 452 36.99 -84.45 REMARK 500 LEU B 454 30.86 -97.02 REMARK 500 ASP C 32 51.49 -96.39 REMARK 500 ASP C 33 -4.80 -143.25 REMARK 500 THR C 55 -104.87 40.38 REMARK 500 GLN C 56 -133.60 6.39 REMARK 500 THR C 57 53.58 31.77 REMARK 500 ASP C 66 3.41 91.97 REMARK 500 GLU C 68 144.64 -29.24 REMARK 500 ASP C 71 -73.80 7.99 REMARK 500 GLU C 87 -105.46 -89.30 REMARK 500 ASN C 88 110.10 -29.10 REMARK 500 SER D 279 26.34 -74.77 REMARK 500 PRO D 302 -18.46 -44.86 REMARK 500 VAL D 305 -72.29 -59.99 REMARK 500 ASN D 326 57.48 -114.46 REMARK 500 VAL D 327 95.52 -69.98 REMARK 500 PHE D 329 -167.85 -116.60 REMARK 500 LEU D 331 -78.31 -39.91 REMARK 500 SER D 354 4.87 -65.95 REMARK 500 PRO D 360 -3.91 -50.71 REMARK 500 TYR D 411 111.76 -37.03 REMARK 500 LYS D 468 -0.28 117.12 REMARK 500 PRO D 471 138.82 -31.23 REMARK 500 GLU D 478 7.12 -69.49 REMARK 500 ILE D 498 -77.20 -74.55 REMARK 500 GLU D 499 128.01 118.88 REMARK 500 SER D 519 -77.66 -24.05 REMARK 500 PRO D 523 144.10 -38.10 REMARK 500 THR D 527 -169.33 -125.06 REMARK 500 GLN E 172 33.42 -150.46 REMARK 500 GLU E 190 43.59 -73.96 REMARK 500 SER E 191 79.64 -153.28 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 DBREF 4TRQ A 253 551 UNP P46674 SAC3_YEAST 253 551 DBREF 4TRQ B 170 455 UNP Q08231 THP1_YEAST 170 455 DBREF 4TRQ C 30 89 UNP O94742 SEM1_YEAST 30 89 DBREF 4TRQ D 253 551 UNP P46674 SAC3_YEAST 253 551 DBREF 4TRQ E 170 455 UNP Q08231 THP1_YEAST 170 455 DBREF 4TRQ F 30 89 UNP O94742 SEM1_YEAST 30 89 SEQRES 1 A 299 SER ASP VAL ARG PRO PRO HIS ILE LEU VAL LYS THR LEU SEQRES 2 A 299 ASP TYR ILE VAL ASP ASN LEU LEU THR THR LEU PRO GLU SEQRES 3 A 299 SER GLU GLY PHE LEU TRP ASP ARG MET ARG SER ILE ARG SEQRES 4 A 299 GLN ASP PHE THR TYR GLN ASN TYR SER GLY PRO GLU ALA SEQRES 5 A 299 VAL ASP CYS ASN GLU ARG ILE VAL ARG ILE HIS LEU LEU SEQRES 6 A 299 ILE LEU HIS ILE MET VAL LYS SER ASN VAL GLU PHE SER SEQRES 7 A 299 LEU GLN GLN GLU LEU GLU GLN LEU HIS LYS SER LEU ILE SEQRES 8 A 299 THR LEU SER GLU ILE TYR ASP ASP VAL ARG SER SER GLY SEQRES 9 A 299 GLY THR CYS PRO ASN GLU ALA GLU PHE ARG ALA TYR ALA SEQRES 10 A 299 LEU LEU SER LYS ILE ARG ASP PRO GLN TYR ASP GLU ASN SEQRES 11 A 299 ILE GLN ARG LEU PRO LYS HIS ILE PHE GLN ASP LYS LEU SEQRES 12 A 299 VAL GLN MET ALA LEU CYS PHE ARG ARG VAL ILE SER ASN SEQRES 13 A 299 SER ALA TYR THR GLU ARG GLY PHE VAL LYS THR GLU ASN SEQRES 14 A 299 CYS LEU ASN PHE TYR ALA ARG PHE PHE GLN LEU MET GLN SEQRES 15 A 299 SER PRO SER LEU PRO LEU LEU MET GLY PHE PHE LEU GLN SEQRES 16 A 299 MET HIS LEU THR ASP ILE ARG PHE TYR ALA LEU ARG ALA SEQRES 17 A 299 LEU SER HIS THR LEU ASN LYS LYS HIS LYS PRO ILE PRO SEQRES 18 A 299 PHE ILE TYR LEU GLU ASN MET LEU LEU PHE ASN ASN ARG SEQRES 19 A 299 GLN GLU ILE ILE GLU PHE CYS ASN TYR TYR SER ILE GLU SEQRES 20 A 299 ILE ILE ASN GLY ASP ALA ALA ASP LEU LYS THR LEU GLN SEQRES 21 A 299 HIS TYR SER HIS LYS LEU SER GLU THR GLN PRO LEU LYS SEQRES 22 A 299 LYS THR TYR LEU THR CYS LEU GLU ARG ARG LEU GLN LYS SEQRES 23 A 299 THR THR TYR LYS GLY LEU ILE ASN GLY GLY GLU ASP ASN SEQRES 1 B 286 GLY LYS GLN ARG ILE LEU LEU TYR LEU VAL ASN LYS LEU SEQRES 2 B 286 ASN ASN ILE TYR PHE ARG ILE GLU SER PRO GLN LEU CYS SEQRES 3 B 286 SER ASN ILE PHE LYS ASN PHE GLN PRO LYS SER MET LEU SEQRES 4 B 286 ALA HIS PHE ASN GLU TYR GLN LEU ASP GLN GLN ILE GLU SEQRES 5 B 286 TYR ARG TYR LEU LEU GLY ARG TYR TYR LEU LEU ASN SER SEQRES 6 B 286 GLN VAL HIS ASN ALA PHE VAL GLN PHE ASN GLU ALA PHE SEQRES 7 B 286 GLN SER LEU LEU ASN LEU PRO LEU THR ASN GLN ALA ILE SEQRES 8 B 286 THR ARG ASN GLY THR ARG ILE LEU ASN TYR MET ILE PRO SEQRES 9 B 286 THR GLY LEU ILE LEU GLY LYS MET VAL LYS TRP GLY PRO SEQRES 10 B 286 LEU ARG PRO PHE LEU SER GLN GLU THR ILE ASP ASN TRP SEQRES 11 B 286 SER VAL LEU TYR LYS HIS VAL ARG TYR GLY ASN ILE GLN SEQRES 12 B 286 GLY VAL SER LEU TRP LEU ARG GLN ASN GLU ARG HIS LEU SEQRES 13 B 286 CYS ALA ARG GLN LEU LEU ILE VAL LEU LEU GLU LYS LEU SEQRES 14 B 286 PRO MET VAL THR TYR ARG ASN LEU ILE LYS THR VAL ILE SEQRES 15 B 286 LYS SER TRP THR THR GLU TRP GLY GLN ASN LYS LEU PRO SEQRES 16 B 286 TYR SER LEU ILE GLU ARG VAL LEU GLN LEU SER ILE GLY SEQRES 17 B 286 PRO THR PHE GLU ASP PRO GLY ALA GLN GLU ILE THR ILE SEQRES 18 B 286 TYR ASN GLY ILE HIS SER PRO LYS ASN VAL GLU ASN VAL SEQRES 19 B 286 LEU VAL THR LEU ILE ASN LEU GLY LEU LEU ARG ALA ASN SEQRES 20 B 286 CYS PHE PRO GLN LEU GLN LEU CYS VAL VAL LYS LYS THR SEQRES 21 B 286 THR MET ILE GLN GLU ILE VAL PRO PRO VAL ASN GLU ARG SEQRES 22 B 286 ILE THR LYS MET PHE PRO ALA HIS SER HIS VAL LEU TRP SEQRES 1 C 60 GLU GLU ASP ASP GLU PHE GLU ASP PHE PRO ILE ASP THR SEQRES 2 C 60 TRP ALA ASN GLY GLU THR ILE LYS SER ASN ALA VAL THR SEQRES 3 C 60 GLN THR ASN ILE TRP GLU GLU ASN TRP ASP ASP VAL GLU SEQRES 4 C 60 VAL ASP ASP ASP PHE THR ASN GLU LEU LYS ALA GLU LEU SEQRES 5 C 60 ASP ARG TYR LYS ARG GLU ASN GLN SEQRES 1 D 299 SER ASP VAL ARG PRO PRO HIS ILE LEU VAL LYS THR LEU SEQRES 2 D 299 ASP TYR ILE VAL ASP ASN LEU LEU THR THR LEU PRO GLU SEQRES 3 D 299 SER GLU GLY PHE LEU TRP ASP ARG MET ARG SER ILE ARG SEQRES 4 D 299 GLN ASP PHE THR TYR GLN ASN TYR SER GLY PRO GLU ALA SEQRES 5 D 299 VAL ASP CYS ASN GLU ARG ILE VAL ARG ILE HIS LEU LEU SEQRES 6 D 299 ILE LEU HIS ILE MET VAL LYS SER ASN VAL GLU PHE SER SEQRES 7 D 299 LEU GLN GLN GLU LEU GLU GLN LEU HIS LYS SER LEU ILE SEQRES 8 D 299 THR LEU SER GLU ILE TYR ASP ASP VAL ARG SER SER GLY SEQRES 9 D 299 GLY THR CYS PRO ASN GLU ALA GLU PHE ARG ALA TYR ALA SEQRES 10 D 299 LEU LEU SER LYS ILE ARG ASP PRO GLN TYR ASP GLU ASN SEQRES 11 D 299 ILE GLN ARG LEU PRO LYS HIS ILE PHE GLN ASP LYS LEU SEQRES 12 D 299 VAL GLN MET ALA LEU CYS PHE ARG ARG VAL ILE SER ASN SEQRES 13 D 299 SER ALA TYR THR GLU ARG GLY PHE VAL LYS THR GLU ASN SEQRES 14 D 299 CYS LEU ASN PHE TYR ALA ARG PHE PHE GLN LEU MET GLN SEQRES 15 D 299 SER PRO SER LEU PRO LEU LEU MET GLY PHE PHE LEU GLN SEQRES 16 D 299 MET HIS LEU THR ASP ILE ARG PHE TYR ALA LEU ARG ALA SEQRES 17 D 299 LEU SER HIS THR LEU ASN LYS LYS HIS LYS PRO ILE PRO SEQRES 18 D 299 PHE ILE TYR LEU GLU ASN MET LEU LEU PHE ASN ASN ARG SEQRES 19 D 299 GLN GLU ILE ILE GLU PHE CYS ASN TYR TYR SER ILE GLU SEQRES 20 D 299 ILE ILE ASN GLY ASP ALA ALA ASP LEU LYS THR LEU GLN SEQRES 21 D 299 HIS TYR SER HIS LYS LEU SER GLU THR GLN PRO LEU LYS SEQRES 22 D 299 LYS THR TYR LEU THR CYS LEU GLU ARG ARG LEU GLN LYS SEQRES 23 D 299 THR THR TYR LYS GLY LEU ILE ASN GLY GLY GLU ASP ASN SEQRES 1 E 286 GLY LYS GLN ARG ILE LEU LEU TYR LEU VAL ASN LYS LEU SEQRES 2 E 286 ASN ASN ILE TYR PHE ARG ILE GLU SER PRO GLN LEU CYS SEQRES 3 E 286 SER ASN ILE PHE LYS ASN PHE GLN PRO LYS SER MET LEU SEQRES 4 E 286 ALA HIS PHE ASN GLU TYR GLN LEU ASP GLN GLN ILE GLU SEQRES 5 E 286 TYR ARG TYR LEU LEU GLY ARG TYR TYR LEU LEU ASN SER SEQRES 6 E 286 GLN VAL HIS ASN ALA PHE VAL GLN PHE ASN GLU ALA PHE SEQRES 7 E 286 GLN SER LEU LEU ASN LEU PRO LEU THR ASN GLN ALA ILE SEQRES 8 E 286 THR ARG ASN GLY THR ARG ILE LEU ASN TYR MET ILE PRO SEQRES 9 E 286 THR GLY LEU ILE LEU GLY LYS MET VAL LYS TRP GLY PRO SEQRES 10 E 286 LEU ARG PRO PHE LEU SER GLN GLU THR ILE ASP ASN TRP SEQRES 11 E 286 SER VAL LEU TYR LYS HIS VAL ARG TYR GLY ASN ILE GLN SEQRES 12 E 286 GLY VAL SER LEU TRP LEU ARG GLN ASN GLU ARG HIS LEU SEQRES 13 E 286 CYS ALA ARG GLN LEU LEU ILE VAL LEU LEU GLU LYS LEU SEQRES 14 E 286 PRO MET VAL THR TYR ARG ASN LEU ILE LYS THR VAL ILE SEQRES 15 E 286 LYS SER TRP THR THR GLU TRP GLY GLN ASN LYS LEU PRO SEQRES 16 E 286 TYR SER LEU ILE GLU ARG VAL LEU GLN LEU SER ILE GLY SEQRES 17 E 286 PRO THR PHE GLU ASP PRO GLY ALA GLN GLU ILE THR ILE SEQRES 18 E 286 TYR ASN GLY ILE HIS SER PRO LYS ASN VAL GLU ASN VAL SEQRES 19 E 286 LEU VAL THR LEU ILE ASN LEU GLY LEU LEU ARG ALA ASN SEQRES 20 E 286 CYS PHE PRO GLN LEU GLN LEU CYS VAL VAL LYS LYS THR SEQRES 21 E 286 THR MET ILE GLN GLU ILE VAL PRO PRO VAL ASN GLU ARG SEQRES 22 E 286 ILE THR LYS MET PHE PRO ALA HIS SER HIS VAL LEU TRP SEQRES 1 F 60 GLU GLU ASP ASP GLU PHE GLU ASP PHE PRO ILE ASP THR SEQRES 2 F 60 TRP ALA ASN GLY GLU THR ILE LYS SER ASN ALA VAL THR SEQRES 3 F 60 GLN THR ASN ILE TRP GLU GLU ASN TRP ASP ASP VAL GLU SEQRES 4 F 60 VAL ASP ASP ASP PHE THR ASN GLU LEU LYS ALA GLU LEU SEQRES 5 F 60 ASP ARG TYR LYS ARG GLU ASN GLN HET SO4 A 601 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 O4 S 2- HELIX 1 AA1 PRO A 257 LEU A 273 1 17 HELIX 2 AA2 THR A 274 LEU A 276 5 3 HELIX 3 AA3 GLU A 280 TYR A 296 1 17 HELIX 4 AA4 GLY A 301 SER A 325 1 25 HELIX 5 AA5 GLN A 333 SER A 355 1 23 HELIX 6 AA6 ASN A 361 ILE A 374 1 14 HELIX 7 AA7 ASP A 376 LEU A 386 1 11 HELIX 8 AA8 PRO A 387 GLN A 392 1 6 HELIX 9 AA9 ASP A 393 SER A 407 1 15 HELIX 10 AB1 PHE A 425 GLN A 434 1 10 HELIX 11 AB2 PRO A 439 GLN A 447 1 9 HELIX 12 AB3 HIS A 449 LEU A 465 1 17 HELIX 13 AB4 PHE A 474 LEU A 481 1 8 HELIX 14 AB5 ASN A 485 TYR A 496 1 12 HELIX 15 AB6 LEU A 508 LEU A 511 5 4 HELIX 16 AB7 LEU A 529 LYS A 538 1 10 HELIX 17 AB8 THR A 540 ASN A 546 1 7 HELIX 18 AB9 ILE B 174 ILE B 189 1 16 HELIX 19 AC1 SER B 191 GLN B 193 5 3 HELIX 20 AC2 LEU B 194 LYS B 200 1 7 HELIX 21 AC3 ASN B 201 GLN B 203 5 3 HELIX 22 AC4 PRO B 204 PHE B 211 1 8 HELIX 23 AC5 ASN B 212 TYR B 214 5 3 HELIX 24 AC6 GLN B 215 ASN B 233 1 19 HELIX 25 AC7 GLN B 235 LEU B 251 1 17 HELIX 26 AC8 ASN B 257 LEU B 278 1 22 HELIX 27 AC9 LYS B 283 ARG B 288 1 6 HELIX 28 AD1 SER B 292 GLY B 309 1 18 HELIX 29 AD2 ASN B 310 ASN B 321 1 12 HELIX 30 AD3 ASN B 321 ARG B 328 1 8 HELIX 31 AD4 LEU B 330 LEU B 338 1 9 HELIX 32 AD5 LEU B 338 THR B 356 1 19 HELIX 33 AD6 TYR B 365 GLY B 377 1 13 HELIX 34 AD7 SER B 396 LYS B 398 5 3 HELIX 35 AD8 ASN B 399 LEU B 410 1 12 HELIX 36 AD9 MET B 431 ILE B 435 5 5 HELIX 37 AE1 PRO B 438 PHE B 447 1 10 HELIX 38 AE2 ASP C 70 GLU C 87 1 18 HELIX 39 AE3 PRO D 257 LEU D 273 1 17 HELIX 40 AE4 SER D 279 GLN D 297 1 19 HELIX 41 AE5 GLY D 301 SER D 325 1 25 HELIX 42 AE6 GLN D 332 SER D 355 1 24 HELIX 43 AE7 ASN D 361 LYS D 373 1 13 HELIX 44 AE8 ASP D 376 GLN D 384 1 9 HELIX 45 AE9 PRO D 387 GLN D 392 1 6 HELIX 46 AF1 ASP D 393 SER D 407 1 15 HELIX 47 AF2 PHE D 425 GLN D 434 1 10 HELIX 48 AF3 PRO D 439 GLN D 447 1 9 HELIX 49 AF4 HIS D 449 LEU D 465 1 17 HELIX 50 AF5 PHE D 474 LEU D 481 1 8 HELIX 51 AF6 ASN D 485 SER D 497 1 13 HELIX 52 AF7 LEU D 508 LEU D 511 5 4 HELIX 53 AF8 LEU D 529 LYS D 538 1 10 HELIX 54 AF9 THR D 540 GLY D 547 1 8 HELIX 55 AG1 ILE E 174 ILE E 189 1 16 HELIX 56 AG2 SER E 191 LEU E 194 5 4 HELIX 57 AG3 CYS E 195 ASN E 201 1 7 HELIX 58 AG4 PRO E 204 ALA E 209 1 6 HELIX 59 AG5 GLN E 215 ASN E 233 1 19 HELIX 60 AG6 GLN E 235 ASN E 252 1 18 HELIX 61 AG7 ALA E 259 LEU E 278 1 20 HELIX 62 AG8 LYS E 283 ARG E 288 1 6 HELIX 63 AG9 SER E 292 GLY E 309 1 18 HELIX 64 AH1 ASN E 310 ALA E 327 1 18 HELIX 65 AH2 LEU E 330 THR E 356 1 27 HELIX 66 AH3 TYR E 365 GLY E 377 1 13 HELIX 67 AH4 SER E 396 LYS E 398 5 3 HELIX 68 AH5 ASN E 399 LEU E 410 1 12 HELIX 69 AH6 MET E 431 ILE E 435 5 5 HELIX 70 AH7 PRO E 438 PHE E 447 1 10 HELIX 71 AH8 VAL F 67 ASP F 70 5 4 HELIX 72 AH9 ASP F 71 ASN F 88 1 18 SHEET 1 AA1 3 ILE A 472 PRO A 473 0 SHEET 2 AA1 3 ALA A 505 ALA A 506 -1 O ALA A 506 N ILE A 472 SHEET 3 AA1 3 ILE A 500 ILE A 501 -1 N ILE A 501 O ALA A 505 SHEET 1 AA2 3 LYS B 362 PRO B 364 0 SHEET 2 AA2 3 LEU B 423 VAL B 425 -1 O CYS B 424 N LEU B 363 SHEET 3 AA2 3 ASN B 416 PHE B 418 -1 N ASN B 416 O VAL B 425 SHEET 1 AA3 3 ILE D 472 PRO D 473 0 SHEET 2 AA3 3 ALA D 505 ALA D 506 -1 O ALA D 506 N ILE D 472 SHEET 3 AA3 3 ILE D 500 ILE D 501 -1 N ILE D 501 O ALA D 505 SHEET 1 AA4 3 LYS E 362 PRO E 364 0 SHEET 2 AA4 3 LEU E 423 VAL E 425 -1 O CYS E 424 N LEU E 363 SHEET 3 AA4 3 ASN E 416 PHE E 418 -1 N ASN E 416 O VAL E 425 SITE 1 AC1 6 ARG A 256 ARG A 286 SER A 289 ARG D 256 SITE 2 AC1 6 ARG D 286 SER D 289 CRYST1 125.741 125.741 268.367 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003726 0.00000