data_4TS2 # _entry.id 4TS2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4TS2 pdb_00004ts2 10.2210/pdb4ts2/pdb WWPDB D_1000202184 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-23 2 'Structure model' 1 1 2014-08-06 3 'Structure model' 1 2 2014-10-01 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 3 0 2022-04-13 7 'Structure model' 3 1 2023-12-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other 5 4 'Structure model' 'Refinement description' 6 4 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Atomic model' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Non-polymer description' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' 14 6 'Structure model' Advisory 15 6 'Structure model' 'Atomic model' 16 6 'Structure model' 'Data collection' 17 6 'Structure model' 'Database references' 18 6 'Structure model' 'Derived calculations' 19 6 'Structure model' 'Structure summary' 20 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' software 6 5 'Structure model' atom_site 7 5 'Structure model' atom_site_anisotrop 8 5 'Structure model' chem_comp 9 5 'Structure model' entity 10 5 'Structure model' entity_name_com 11 5 'Structure model' pdbx_branch_scheme 12 5 'Structure model' pdbx_chem_comp_identifier 13 5 'Structure model' pdbx_entity_branch 14 5 'Structure model' pdbx_entity_branch_descriptor 15 5 'Structure model' pdbx_entity_branch_link 16 5 'Structure model' pdbx_entity_branch_list 17 5 'Structure model' pdbx_entity_nonpoly 18 5 'Structure model' pdbx_molecule_features 19 5 'Structure model' pdbx_nonpoly_scheme 20 5 'Structure model' pdbx_struct_conn_angle 21 5 'Structure model' refine_hist 22 5 'Structure model' struct_asym 23 5 'Structure model' struct_conn 24 5 'Structure model' struct_conn_type 25 5 'Structure model' struct_site 26 5 'Structure model' struct_site_gen 27 6 'Structure model' atom_site 28 6 'Structure model' atom_site_anisotrop 29 6 'Structure model' chem_comp 30 6 'Structure model' database_2 31 6 'Structure model' entity 32 6 'Structure model' ndb_struct_na_base_pair 33 6 'Structure model' ndb_struct_na_base_pair_step 34 6 'Structure model' pdbx_entity_nonpoly 35 6 'Structure model' pdbx_nonpoly_scheme 36 6 'Structure model' pdbx_poly_seq_scheme 37 6 'Structure model' pdbx_struct_assembly_gen 38 6 'Structure model' pdbx_struct_conn_angle 39 6 'Structure model' pdbx_unobs_or_zero_occ_residues 40 6 'Structure model' struct_asym 41 6 'Structure model' struct_conn 42 6 'Structure model' struct_ref_seq 43 7 'Structure model' chem_comp_atom 44 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity.pdbx_description' 2 4 'Structure model' '_entity.src_method' 3 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 4 'Structure model' '_software.classification' 7 5 'Structure model' '_atom_site.B_iso_or_equiv' 8 5 'Structure model' '_atom_site.Cartn_x' 9 5 'Structure model' '_atom_site.Cartn_y' 10 5 'Structure model' '_atom_site.Cartn_z' 11 5 'Structure model' '_atom_site.auth_asym_id' 12 5 'Structure model' '_atom_site.auth_atom_id' 13 5 'Structure model' '_atom_site.auth_comp_id' 14 5 'Structure model' '_atom_site.auth_seq_id' 15 5 'Structure model' '_atom_site.label_asym_id' 16 5 'Structure model' '_atom_site.label_atom_id' 17 5 'Structure model' '_atom_site.label_comp_id' 18 5 'Structure model' '_atom_site.label_entity_id' 19 5 'Structure model' '_atom_site.pdbx_formal_charge' 20 5 'Structure model' '_atom_site.type_symbol' 21 5 'Structure model' '_atom_site_anisotrop.id' 22 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 23 5 'Structure model' '_chem_comp.formula' 24 5 'Structure model' '_chem_comp.formula_weight' 25 5 'Structure model' '_chem_comp.id' 26 5 'Structure model' '_chem_comp.mon_nstd_flag' 27 5 'Structure model' '_chem_comp.name' 28 5 'Structure model' '_chem_comp.type' 29 5 'Structure model' '_entity.formula_weight' 30 5 'Structure model' '_entity.pdbx_description' 31 5 'Structure model' '_entity.pdbx_number_of_molecules' 32 5 'Structure model' '_entity.src_method' 33 5 'Structure model' '_entity.type' 34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 37 5 'Structure model' '_pdbx_struct_conn_angle.value' 38 5 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 39 5 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 40 5 'Structure model' '_struct_asym.entity_id' 41 5 'Structure model' '_struct_conn_type.id' 42 6 'Structure model' '_atom_site.B_iso_or_equiv' 43 6 'Structure model' '_atom_site.Cartn_x' 44 6 'Structure model' '_atom_site.Cartn_y' 45 6 'Structure model' '_atom_site.Cartn_z' 46 6 'Structure model' '_atom_site.auth_asym_id' 47 6 'Structure model' '_atom_site.auth_atom_id' 48 6 'Structure model' '_atom_site.auth_comp_id' 49 6 'Structure model' '_atom_site.auth_seq_id' 50 6 'Structure model' '_atom_site.label_asym_id' 51 6 'Structure model' '_atom_site.label_atom_id' 52 6 'Structure model' '_atom_site.label_comp_id' 53 6 'Structure model' '_atom_site.label_entity_id' 54 6 'Structure model' '_atom_site.label_seq_id' 55 6 'Structure model' '_atom_site.pdbx_formal_charge' 56 6 'Structure model' '_atom_site.type_symbol' 57 6 'Structure model' '_atom_site_anisotrop.U[1][1]' 58 6 'Structure model' '_atom_site_anisotrop.U[1][2]' 59 6 'Structure model' '_atom_site_anisotrop.U[1][3]' 60 6 'Structure model' '_atom_site_anisotrop.U[2][2]' 61 6 'Structure model' '_atom_site_anisotrop.U[2][3]' 62 6 'Structure model' '_atom_site_anisotrop.U[3][3]' 63 6 'Structure model' '_atom_site_anisotrop.id' 64 6 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 65 6 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 66 6 'Structure model' '_chem_comp.pdbx_synonyms' 67 6 'Structure model' '_database_2.pdbx_DOI' 68 6 'Structure model' '_database_2.pdbx_database_accession' 69 6 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 70 6 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 71 6 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 72 6 'Structure model' '_pdbx_poly_seq_scheme.pdb_seq_num' 73 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 74 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 75 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 76 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 77 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 78 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 79 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 80 6 'Structure model' '_pdbx_struct_conn_angle.value' 81 6 'Structure model' '_struct_ref_seq.db_align_end' 82 6 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4TS2 _pdbx_database_status.recvd_initial_deposition_date 2014-06-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Warner, K.D.' 1 'Chen, M.C.' 2 'Song, W.' 3 'Strack, R.L.' 4 'Thorn, A.' 5 'Jaffrey, S.R.' 6 ;Ferre-D'Amare, A.R. ; 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 21 _citation.language ? _citation.page_first 658 _citation.page_last 663 _citation.title 'Structural basis for activity of highly efficient RNA mimics of green fluorescent protein.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nsmb.2865 _citation.pdbx_database_id_PubMed 25026079 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warner, K.D.' 1 ? primary 'Chen, M.C.' 2 ? primary 'Song, W.' 3 ? primary 'Strack, R.L.' 4 ? primary 'Thorn, A.' 5 ? primary 'Jaffrey, S.R.' 6 ? primary ;Ferre-D'Amare, A.R. ; 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Spinach aptamer RNA, bimolecular construct' 14394.598 1 ? ? ? ? 2 polymer syn 'Spinach aptamer RNA, bimolecular construct' 15220.934 1 ? ? ? ? 3 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 6 non-polymer syn '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one' 252.217 1 ? ? ? ? 7 water nat water 18.015 5 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name sucrose # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUG(CCC)' GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUGC X ? 2 polyribonucleotide no yes 'GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGU(CCC)' GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC Y ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 'POTASSIUM ION' K 6 '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one' 38E 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 G n 1 5 C n 1 6 G n 1 7 A n 1 8 C n 1 9 C n 1 10 G n 1 11 A n 1 12 A n 1 13 U n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 U n 1 19 G n 1 20 G n 1 21 U n 1 22 G n 1 23 A n 1 24 A n 1 25 G n 1 26 G n 1 27 A n 1 28 C n 1 29 G n 1 30 G n 1 31 G n 1 32 U n 1 33 C n 1 34 C n 1 35 A n 1 36 G n 1 37 C n 1 38 C n 1 39 G n 1 40 G n 1 41 C n 1 42 U n 1 43 G n 1 44 CCC n 2 1 G n 2 2 C n 2 3 A n 2 4 G n 2 5 C n 2 6 C n 2 7 G n 2 8 G n 2 9 C n 2 10 U n 2 11 U n 2 12 G n 2 13 U n 2 14 U n 2 15 G n 2 16 A n 2 17 G n 2 18 U n 2 19 A n 2 20 G n 2 21 A n 2 22 G n 2 23 U n 2 24 G n 2 25 U n 2 26 G n 2 27 A n 2 28 G n 2 29 C n 2 30 U n 2 31 C n 2 32 C n 2 33 G n 2 34 U n 2 35 A n 2 36 A n 2 37 C n 2 38 U n 2 39 G n 2 40 G n 2 41 U n 2 42 C n 2 43 G n 2 44 C n 2 45 G n 2 46 U n 2 47 CCC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 44 'synthetic construct' ? 32630 ? 2 1 sample 1 47 'synthetic construct' ? 32630 ? # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 3 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 38E non-polymer . '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one' ? 'C12 H10 F2 N2 O2' 252.217 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose 'beta-D-fructose; D-fructose; fructose' 'C6 H12 O6' 180.156 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 A 2 2 2 A A X . n A 1 3 C 3 3 3 C C X . n A 1 4 G 4 4 4 G G X . n A 1 5 C 5 5 5 C C X . n A 1 6 G 6 6 6 G G X . n A 1 7 A 7 7 7 A A X . n A 1 8 C 8 8 8 C C X . n A 1 9 C 9 9 9 C C X . n A 1 10 G 10 10 10 G G X . n A 1 11 A 11 11 11 A A X . n A 1 12 A 12 12 12 A A X . n A 1 13 U 13 13 13 U U X . n A 1 14 G 14 14 14 G G X . n A 1 15 A 15 15 15 A A X . n A 1 16 A 16 16 16 A A X . n A 1 17 A 17 17 17 A A X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 G 20 20 20 G G X . n A 1 21 U 21 21 21 U U X . n A 1 22 G 22 22 22 G G X . n A 1 23 A 23 23 23 A A X . n A 1 24 A 24 24 24 A A X . n A 1 25 G 25 25 25 G G X . n A 1 26 G 26 26 26 G G X . n A 1 27 A 27 27 27 A A X . n A 1 28 C 28 28 28 C C X . n A 1 29 G 29 29 29 G G X . n A 1 30 G 30 30 30 G G X . n A 1 31 G 31 31 31 G G X . n A 1 32 U 32 32 32 U U X . n A 1 33 C 33 33 33 C C X . n A 1 34 C 34 34 34 C C X . n A 1 35 A 35 35 35 A A X . n A 1 36 G 36 36 36 G G X . n A 1 37 C 37 37 37 C C X . n A 1 38 C 38 38 38 C C X . n A 1 39 G 39 39 39 G G X . n A 1 40 G 40 40 40 G G X . n A 1 41 C 41 41 41 C C X . n A 1 42 U 42 42 42 U U X . n A 1 43 G 43 43 43 G G X . n A 1 44 CCC 44 44 44 CCC CCC X . n B 2 1 G 1 49 49 G G Y . n B 2 2 C 2 50 50 C C Y . n B 2 3 A 3 51 51 A A Y . n B 2 4 G 4 52 52 G G Y . n B 2 5 C 5 53 53 C C Y . n B 2 6 C 6 54 54 C C Y . n B 2 7 G 7 55 55 G G Y . n B 2 8 G 8 56 56 G G Y . n B 2 9 C 9 57 57 C C Y . n B 2 10 U 10 58 58 U U Y . n B 2 11 U 11 59 59 U U Y . n B 2 12 G 12 60 60 G G Y . n B 2 13 U 13 61 61 U U Y . n B 2 14 U 14 62 62 U U Y . n B 2 15 G 15 63 63 G G Y . n B 2 16 A 16 64 64 A A Y . n B 2 17 G 17 65 65 G G Y . n B 2 18 U 18 66 66 U U Y . n B 2 19 A 19 67 67 A A Y . n B 2 20 G 20 68 68 G G Y . n B 2 21 A 21 69 69 A A Y . n B 2 22 G 22 70 70 G G Y . n B 2 23 U 23 71 71 U U Y . n B 2 24 G 24 72 72 G G Y . n B 2 25 U 25 73 73 U U Y . n B 2 26 G 26 74 74 G G Y . n B 2 27 A 27 75 75 A A Y . n B 2 28 G 28 76 76 G G Y . n B 2 29 C 29 77 77 C C Y . n B 2 30 U 30 78 78 U U Y . n B 2 31 C 31 79 79 C C Y . n B 2 32 C 32 80 80 C C Y . n B 2 33 G 33 81 81 G G Y . n B 2 34 U 34 82 82 U U Y . n B 2 35 A 35 83 83 A A Y . n B 2 36 A 36 84 84 A A Y . n B 2 37 C 37 85 85 C C Y . n B 2 38 U 38 86 86 U U Y . n B 2 39 G 39 87 87 G G Y . n B 2 40 G 40 88 88 G G Y . n B 2 41 U 41 89 89 U U Y . n B 2 42 C 42 90 90 C C Y . n B 2 43 G 43 91 91 G G Y . n B 2 44 C 44 92 92 C C Y . n B 2 45 G 45 93 93 G G Y . n B 2 46 U 46 94 94 U U Y . n B 2 47 CCC 47 101 95 CCC CCC Y . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 GLC 1 A GLC 1 E SUC 1 n C 3 FRU 2 A FRU 2 E SUC 1 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 101 4 MG MG X . E 5 K 1 201 1 K K Y . F 5 K 1 202 2 K K Y . G 5 K 1 203 3 K K Y . H 6 38E 1 204 1 38E XDF Y . I 7 HOH 1 201 5 HOH HOH X . I 7 HOH 2 202 9 HOH HOH X . J 7 HOH 1 301 6 HOH HOH Y . J 7 HOH 2 302 8 HOH HOH Y . J 7 HOH 3 303 7 HOH HOH Y . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X A 11 ? N9 ? A A 11 N9 2 1 Y 1 X A 11 ? C8 ? A A 11 C8 3 1 Y 1 X A 11 ? N7 ? A A 11 N7 4 1 Y 1 X A 11 ? C5 ? A A 11 C5 5 1 Y 1 X A 11 ? C6 ? A A 11 C6 6 1 Y 1 X A 11 ? N6 ? A A 11 N6 7 1 Y 1 X A 11 ? N1 ? A A 11 N1 8 1 Y 1 X A 11 ? C2 ? A A 11 C2 9 1 Y 1 X A 11 ? N3 ? A A 11 N3 10 1 Y 1 X A 11 ? C4 ? A A 11 C4 11 1 Y 1 X U 13 ? N1 ? A U 13 N1 12 1 Y 1 X U 13 ? C2 ? A U 13 C2 13 1 Y 1 X U 13 ? O2 ? A U 13 O2 14 1 Y 1 X U 13 ? N3 ? A U 13 N3 15 1 Y 1 X U 13 ? C4 ? A U 13 C4 16 1 Y 1 X U 13 ? O4 ? A U 13 O4 17 1 Y 1 X U 13 ? C5 ? A U 13 C5 18 1 Y 1 X U 13 ? C6 ? A U 13 C6 19 1 Y 1 Y U 58 ? N1 ? B U 10 N1 20 1 Y 1 Y U 58 ? C2 ? B U 10 C2 21 1 Y 1 Y U 58 ? O2 ? B U 10 O2 22 1 Y 1 Y U 58 ? N3 ? B U 10 N3 23 1 Y 1 Y U 58 ? C4 ? B U 10 C4 24 1 Y 1 Y U 58 ? O4 ? B U 10 O4 25 1 Y 1 Y U 58 ? C5 ? B U 10 C5 26 1 Y 1 Y U 58 ? C6 ? B U 10 C6 27 1 Y 1 Y U 62 ? N1 ? B U 14 N1 28 1 Y 1 Y U 62 ? C2 ? B U 14 C2 29 1 Y 1 Y U 62 ? O2 ? B U 14 O2 30 1 Y 1 Y U 62 ? N3 ? B U 14 N3 31 1 Y 1 Y U 62 ? C4 ? B U 14 C4 32 1 Y 1 Y U 62 ? O4 ? B U 14 O4 33 1 Y 1 Y U 62 ? C5 ? B U 14 C5 34 1 Y 1 Y U 62 ? C6 ? B U 14 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html ? SCALA ? ? other . 1 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program 5.8.0071 2 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Dec. 10, 2013' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.14 3 # _cell.length_a 39.877 _cell.length_b 49.399 _cell.length_c 188.410 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4TS2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4TS2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.5M NaCl, 0.1M succinate-K pH 7.0, 10% sucrose' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-04-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4TS2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.88 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8415 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] 1.5100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -2.3100 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.8000 _refine.B_iso_max 263.470 _refine.B_iso_mean 108.6010 _refine.B_iso_min 54.010 _refine.correlation_coeff_Fo_to_Fc 0.9500 _refine.correlation_coeff_Fo_to_Fc_free 0.9430 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4TS2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8840 _refine.ls_d_res_low 50.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8892 _refine.ls_number_reflns_R_free 477 _refine.ls_number_reflns_R_work 8415 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3400 _refine.ls_percent_reflns_R_free 5.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2154 _refine.ls_R_factor_R_free 0.2566 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2129 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 1.2130 _refine.pdbx_overall_ESU_R_Free 0.3660 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 33.0180 _refine.overall_SU_ML 0.2990 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.8840 _refine_hist.d_res_low 50.0000 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1972 _refine_hist.pdbx_number_residues_total 90 _refine_hist.pdbx_B_iso_mean_ligand 135.28 _refine_hist.pdbx_B_iso_mean_solvent 99.10 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1899 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.011 2194 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 905 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.732 1.345 3420 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.909 3.000 2197 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.096 0.200 369 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1083 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 482 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 6.094 8.349 2194 ? r_scbond_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.8840 _refine_ls_shell.d_res_low 2.9590 _refine_ls_shell.number_reflns_all 609 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 580 _refine_ls_shell.percent_reflns_obs 99.0200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.5620 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.4680 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? # _struct.entry_id 4TS2 _struct.title 'Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4TS2 _struct_keywords.text 'aptamer, fluorescence, G-quadruplex, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4TS2 4TS2 ? 1 ? 1 2 PDB 4TS2 4TS2 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4TS2 X 1 ? 44 ? 4TS2 1 ? 44 ? 1 44 2 2 4TS2 Y 1 ? 47 ? 4TS2 49 ? 101 ? 49 101 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6790 ? 1 MORE -39 ? 1 'SSA (A^2)' 15060 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 43 "O3'" ? ? ? 1_555 A CCC 44 P ? ? X G 43 X CCC 44 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? B U 46 "O3'" ? ? ? 1_555 B CCC 47 P ? ? Y U 94 Y CCC 101 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? C GLC . C1 ? ? ? 1_555 C FRU . O2 ? ? A GLC 1 A FRU 2 1_555 ? ? ? ? ? ? ? 1.438 ? ? metalc1 metalc ? ? A G 25 O6 ? ? ? 1_555 E K . K ? ? X G 25 Y K 201 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc2 metalc ? ? A G 25 O6 ? ? ? 1_555 F K . K ? ? X G 25 Y K 202 1_555 ? ? ? ? ? ? ? 2.891 ? ? metalc3 metalc ? ? A G 26 OP2 ? ? ? 1_555 D MG . MG ? ? X G 26 X MG 101 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc4 metalc ? ? A G 26 O6 ? ? ? 1_555 F K . K ? ? X G 26 Y K 202 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc5 metalc ? ? A G 29 O6 ? ? ? 1_555 E K . K ? ? X G 29 Y K 201 1_555 ? ? ? ? ? ? ? 3.235 ? ? metalc6 metalc ? ? A G 29 O6 ? ? ? 1_555 F K . K ? ? X G 29 Y K 202 1_555 ? ? ? ? ? ? ? 3.067 ? ? metalc7 metalc ? ? A G 30 O6 ? ? ? 1_555 F K . K ? ? X G 30 Y K 202 1_555 ? ? ? ? ? ? ? 2.851 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? X MG 101 Y HOH 302 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? X MG 101 Y HOH 303 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc10 metalc ? ? B G 17 O6 ? ? ? 1_555 F K . K ? ? Y G 65 Y K 202 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc11 metalc ? ? B G 20 O6 ? ? ? 1_555 E K . K ? ? Y G 68 Y K 201 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc12 metalc ? ? B G 20 O6 ? ? ? 1_555 F K . K ? ? Y G 68 Y K 202 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc13 metalc ? ? B G 22 O6 ? ? ? 1_555 F K . K ? ? Y G 70 Y K 202 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc14 metalc ? ? B G 24 O6 ? ? ? 1_555 E K . K ? ? Y G 72 Y K 201 1_555 ? ? ? ? ? ? ? 2.962 ? ? metalc15 metalc ? ? B G 24 O6 ? ? ? 1_555 F K . K ? ? Y G 72 Y K 202 1_555 ? ? ? ? ? ? ? 2.925 ? ? metalc16 metalc ? ? B U 25 "O2'" ? ? ? 1_555 E K . K ? ? Y U 73 Y K 201 1_555 ? ? ? ? ? ? ? 2.875 ? ? metalc17 metalc ? ? B U 25 O2 ? ? ? 1_555 E K . K ? ? Y U 73 Y K 201 1_555 ? ? ? ? ? ? ? 2.715 ? ? metalc18 metalc ? ? B G 26 O6 ? ? ? 1_555 E K . K ? ? Y G 74 Y K 201 1_555 ? ? ? ? ? ? ? 2.877 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B CCC 47 N3 ? ? X G 1 Y CCC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B CCC 47 O2 ? ? X G 1 Y CCC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B CCC 47 N4 ? ? X G 1 Y CCC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 46 N3 ? ? X A 2 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 46 O4 ? ? X A 2 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 45 N1 ? ? X C 3 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 45 O6 ? ? X C 3 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 45 N2 ? ? X C 3 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 44 N3 ? ? X G 4 Y C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 44 O2 ? ? X G 4 Y C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 44 N4 ? ? X G 4 Y C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 43 N1 ? ? X C 5 Y G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 43 O6 ? ? X C 5 Y G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 43 N2 ? ? X C 5 Y G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 42 N3 ? ? X G 6 Y C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 42 O2 ? ? X G 6 Y C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 42 N4 ? ? X G 6 Y C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 41 N3 ? ? X A 7 Y U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 41 O4 ? ? X A 7 Y U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 40 N1 ? ? X C 8 Y G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 40 O6 ? ? X C 8 Y G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 40 N2 ? ? X C 8 Y G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 39 N1 ? ? X C 9 Y G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 39 O6 ? ? X C 9 Y G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 39 N2 ? ? X C 9 Y G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 14 O6 ? ? X G 10 X G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 14 N7 ? ? X G 10 X G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 37 N4 ? ? X G 10 Y C 85 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog29 hydrog ? ? A A 12 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 12 Y U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 12 Y U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 37 N3 ? ? X G 14 Y C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 37 O2 ? ? X G 14 Y C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 37 N4 ? ? X G 14 Y C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 17 N1 ? ? ? 1_555 B U 34 N3 ? ? X A 17 Y U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 17 N6 ? ? ? 1_555 B U 34 O4 ? ? X A 17 Y U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N3 ? ? ? 1_555 B A 36 N6 ? ? X A 17 Y A 84 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A U 18 O2 ? ? ? 1_555 B G 33 N1 ? ? X U 18 Y G 81 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 32 N3 ? ? X G 19 Y C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 32 O2 ? ? X G 19 Y C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 32 N4 ? ? X G 19 Y C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 20 N1 ? ? ? 1_555 B C 31 N3 ? ? X G 20 Y C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 20 N2 ? ? ? 1_555 B C 31 O2 ? ? X G 20 Y C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 20 O6 ? ? ? 1_555 B C 31 N4 ? ? X G 20 Y C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 21 N3 ? ? ? 1_555 B U 30 O2 ? ? X U 21 Y U 78 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog45 hydrog ? ? A U 21 O4 ? ? ? 1_555 B U 30 N3 ? ? X U 21 Y U 78 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog46 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 29 N3 ? ? X G 22 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 29 O2 ? ? X G 22 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 29 N4 ? ? X G 22 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 23 N1 ? ? ? 1_555 B G 28 N1 ? ? X A 23 Y G 76 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog50 hydrog ? ? A A 23 N6 ? ? ? 1_555 B G 28 O6 ? ? X A 23 Y G 76 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A A 24 N1 ? ? ? 1_555 B A 27 N6 ? ? X A 24 Y A 75 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 25 N1 ? ? ? 1_555 A G 29 O6 ? ? X G 25 X G 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? A G 25 N2 ? ? ? 1_555 A G 29 N7 ? ? X G 25 X G 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? A G 25 N7 ? ? ? 1_555 B G 20 N2 ? ? X G 25 Y G 68 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? A G 25 O6 ? ? ? 1_555 B G 20 N1 ? ? X G 25 Y G 68 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? A G 26 N1 ? ? ? 1_555 A G 30 O6 ? ? X G 26 X G 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog57 hydrog ? ? A G 26 N2 ? ? ? 1_555 A G 30 N7 ? ? X G 26 X G 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? A G 26 N7 ? ? ? 1_555 B G 17 N2 ? ? X G 26 Y G 65 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? A G 26 O6 ? ? ? 1_555 B G 17 N1 ? ? X G 26 Y G 65 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? A C 28 N4 ? ? ? 1_555 B U 18 O4 ? ? X C 28 Y U 66 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog61 hydrog ? ? A C 28 N3 ? ? ? 1_555 B G 26 N1 ? ? X C 28 Y G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 28 N4 ? ? ? 1_555 B G 26 O6 ? ? X C 28 Y G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 28 O2 ? ? ? 1_555 B G 26 N2 ? ? X C 28 Y G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 29 N1 ? ? ? 1_555 B G 24 O6 ? ? X G 29 Y G 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? A G 29 N2 ? ? ? 1_555 B G 24 N7 ? ? X G 29 Y G 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog66 hydrog ? ? A G 30 N1 ? ? ? 1_555 B G 22 O6 ? ? X G 30 Y G 70 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog67 hydrog ? ? A G 30 N2 ? ? ? 1_555 B G 22 N7 ? ? X G 30 Y G 70 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog68 hydrog ? ? A U 32 N3 ? ? ? 1_555 B A 16 N1 ? ? X U 32 Y A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 32 O4 ? ? ? 1_555 B A 16 N6 ? ? X U 32 Y A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 33 N3 ? ? ? 1_555 B G 15 N1 ? ? X C 33 Y G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 33 N4 ? ? ? 1_555 B G 15 O6 ? ? X C 33 Y G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 33 O2 ? ? ? 1_555 B G 15 N2 ? ? X C 33 Y G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 34 N3 ? ? ? 1_555 B G 12 N1 ? ? X C 34 Y G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 34 N4 ? ? ? 1_555 B G 12 O6 ? ? X C 34 Y G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 34 O2 ? ? ? 1_555 B G 12 N2 ? ? X C 34 Y G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 35 N1 ? ? ? 1_555 B U 11 N3 ? ? X A 35 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 35 N6 ? ? ? 1_555 B U 11 O4 ? ? X A 35 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 36 N1 ? ? ? 1_555 B C 9 N3 ? ? X G 36 Y C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 36 N2 ? ? ? 1_555 B C 9 O2 ? ? X G 36 Y C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 36 O6 ? ? ? 1_555 B C 9 N4 ? ? X G 36 Y C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 37 N3 ? ? ? 1_555 B G 8 N1 ? ? X C 37 Y G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 37 N4 ? ? ? 1_555 B G 8 O6 ? ? X C 37 Y G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 37 O2 ? ? ? 1_555 B G 8 N2 ? ? X C 37 Y G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 38 O2 ? ? ? 1_555 B G 7 N2 ? ? X C 38 Y G 55 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog85 hydrog ? ? A G 39 N1 ? ? ? 1_555 B C 6 N3 ? ? X G 39 Y C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 39 N2 ? ? ? 1_555 B C 6 O2 ? ? X G 39 Y C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 39 O6 ? ? ? 1_555 B C 6 N4 ? ? X G 39 Y C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 40 N1 ? ? ? 1_555 B C 5 N3 ? ? X G 40 Y C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 40 N2 ? ? ? 1_555 B C 5 O2 ? ? X G 40 Y C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 40 O6 ? ? ? 1_555 B C 5 N4 ? ? X G 40 Y C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 41 N3 ? ? ? 1_555 B G 4 N1 ? ? X C 41 Y G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 41 N4 ? ? ? 1_555 B G 4 O6 ? ? X C 41 Y G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 41 O2 ? ? ? 1_555 B G 4 N2 ? ? X C 41 Y G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 3 N1 ? ? X U 42 Y A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 3 N6 ? ? X U 42 Y A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 43 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 43 Y C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 43 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 43 Y C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 43 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 43 Y C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 16 N7 ? ? Y U 61 Y A 64 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog100 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 16 N6 ? ? Y U 61 Y A 64 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog101 hydrog ? ? B G 17 N7 ? ? ? 1_555 B G 22 N2 ? ? Y G 65 Y G 70 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog102 hydrog ? ? B G 17 O6 ? ? ? 1_555 B G 22 N1 ? ? Y G 65 Y G 70 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog103 hydrog ? ? B U 18 O2 ? ? ? 1_555 B U 25 N3 ? ? Y U 66 Y U 73 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog104 hydrog ? ? B G 20 N7 ? ? ? 1_555 B G 24 N2 ? ? Y G 68 Y G 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog105 hydrog ? ? B G 20 O6 ? ? ? 1_555 B G 24 N1 ? ? Y G 68 Y G 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? A G 29 ? X G 29 ? 1_555 63.9 ? 2 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 73.4 ? 3 O6 ? A G 29 ? X G 29 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 102.1 ? 4 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 108.1 ? 5 O6 ? A G 29 ? X G 29 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 69.3 ? 6 O6 ? B G 20 ? Y G 68 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 66.6 ? 7 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 "O2'" ? B U 25 ? Y U 73 ? 1_555 145.6 ? 8 O6 ? A G 29 ? X G 29 ? 1_555 K ? E K . ? Y K 201 ? 1_555 "O2'" ? B U 25 ? Y U 73 ? 1_555 146.8 ? 9 O6 ? B G 20 ? Y G 68 ? 1_555 K ? E K . ? Y K 201 ? 1_555 "O2'" ? B U 25 ? Y U 73 ? 1_555 82.0 ? 10 O6 ? B G 24 ? Y G 72 ? 1_555 K ? E K . ? Y K 201 ? 1_555 "O2'" ? B U 25 ? Y U 73 ? 1_555 82.8 ? 11 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O2 ? B U 25 ? Y U 73 ? 1_555 82.8 ? 12 O6 ? A G 29 ? X G 29 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O2 ? B U 25 ? Y U 73 ? 1_555 146.7 ? 13 O6 ? B G 20 ? Y G 68 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O2 ? B U 25 ? Y U 73 ? 1_555 65.9 ? 14 O6 ? B G 24 ? Y G 72 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O2 ? B U 25 ? Y U 73 ? 1_555 125.2 ? 15 "O2'" ? B U 25 ? Y U 73 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O2 ? B U 25 ? Y U 73 ? 1_555 65.1 ? 16 O6 ? A G 25 ? X G 25 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 100.6 ? 17 O6 ? A G 29 ? X G 29 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 63.5 ? 18 O6 ? B G 20 ? Y G 68 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 165.3 ? 19 O6 ? B G 24 ? Y G 72 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 103.7 ? 20 "O2'" ? B U 25 ? Y U 73 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 108.5 ? 21 O2 ? B U 25 ? Y U 73 ? 1_555 K ? E K . ? Y K 201 ? 1_555 O6 ? B G 26 ? Y G 74 ? 1_555 127.5 ? 22 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 26 ? X G 26 ? 1_555 86.4 ? 23 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 29 ? X G 29 ? 1_555 66.2 ? 24 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 29 ? X G 29 ? 1_555 84.7 ? 25 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 30 ? X G 30 ? 1_555 135.8 ? 26 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 30 ? X G 30 ? 1_555 69.5 ? 27 O6 ? A G 29 ? X G 29 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? A G 30 ? X G 30 ? 1_555 74.9 ? 28 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 17 ? Y G 65 ? 1_555 100.5 ? 29 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 17 ? Y G 65 ? 1_555 69.9 ? 30 O6 ? A G 29 ? X G 29 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 17 ? Y G 65 ? 1_555 152.4 ? 31 O6 ? A G 30 ? X G 30 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 17 ? Y G 65 ? 1_555 104.7 ? 32 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 80.1 ? 33 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 144.7 ? 34 O6 ? A G 29 ? X G 29 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 118.2 ? 35 O6 ? A G 30 ? X G 30 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 139.2 ? 36 O6 ? B G 17 ? Y G 65 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 20 ? Y G 68 ? 1_555 80.7 ? 37 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 157.2 ? 38 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 104.4 ? 39 O6 ? A G 29 ? X G 29 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 133.8 ? 40 O6 ? A G 30 ? X G 30 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 66.9 ? 41 O6 ? B G 17 ? Y G 65 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 65.9 ? 42 O6 ? B G 20 ? Y G 68 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 22 ? Y G 70 ? 1_555 79.6 ? 43 O6 ? A G 25 ? X G 25 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 109.4 ? 44 O6 ? A G 26 ? X G 26 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 142.5 ? 45 O6 ? A G 29 ? X G 29 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 72.2 ? 46 O6 ? A G 30 ? X G 30 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 76.2 ? 47 O6 ? B G 17 ? Y G 65 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 135.1 ? 48 O6 ? B G 20 ? Y G 68 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 72.6 ? 49 O6 ? B G 22 ? Y G 70 ? 1_555 K ? F K . ? Y K 202 ? 1_555 O6 ? B G 24 ? Y G 72 ? 1_555 74.2 ? 50 OP2 ? A G 26 ? X G 26 ? 1_555 MG ? D MG . ? X MG 101 ? 1_555 O ? J HOH . ? Y HOH 302 ? 1_555 90.1 ? 51 OP2 ? A G 26 ? X G 26 ? 1_555 MG ? D MG . ? X MG 101 ? 1_555 O ? J HOH . ? Y HOH 303 ? 1_555 77.5 ? 52 O ? J HOH . ? Y HOH 302 ? 1_555 MG ? D MG . ? X MG 101 ? 1_555 O ? J HOH . ? Y HOH 303 ? 1_555 104.2 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 X _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 10 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 X _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.530 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.077 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" X G 19 ? ? P X G 19 ? ? OP2 X G 19 ? ? 118.38 110.70 7.68 1.20 N 2 1 "O5'" X G 20 ? ? P X G 20 ? ? OP2 X G 20 ? ? 97.22 105.70 -8.48 0.90 N 3 1 "O5'" Y U 71 ? ? P Y U 71 ? ? OP2 Y U 71 ? ? 97.92 105.70 -7.78 0.90 N # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900003 _pdbx_molecule.asym_id C # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -18.3214 _pdbx_refine_tls.origin_y 2.0927 _pdbx_refine_tls.origin_z -1.3038 _pdbx_refine_tls.T[1][1] 0.1872 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0011 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.1456 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.2896 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0442 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.3944 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.0718 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.5619 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.6191 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.7337 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.2149 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.9165 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.2034 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.1564 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.2960 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.1055 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0009 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.3519 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0926 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1414 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.2025 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? X 1 ? ? X 44 ? ? 2 'X-RAY DIFFRACTION' 1 ? ? Y 49 ? ? Y 95 ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 38E F1 F N N 1 38E C2 C Y N 2 38E C1 C Y N 3 38E O1 O N N 4 38E C3 C Y N 5 38E C4 C Y N 6 38E C5 C Y N 7 38E C C Y N 8 38E F F N N 9 38E C6 C N N 10 38E C7 C N N 11 38E C9 C N N 12 38E O O N N 13 38E N1 N N N 14 38E C10 C N N 15 38E C8 C N N 16 38E N N N N 17 38E C11 C N N 18 38E H1 H N N 19 38E H2 H N N 20 38E H3 H N N 21 38E H4 H N N 22 38E H5 H N N 23 38E H6 H N N 24 38E H7 H N N 25 38E H8 H N N 26 38E H9 H N N 27 38E H10 H N N 28 A OP3 O N N 29 A P P N N 30 A OP1 O N N 31 A OP2 O N N 32 A "O5'" O N N 33 A "C5'" C N N 34 A "C4'" C N R 35 A "O4'" O N N 36 A "C3'" C N S 37 A "O3'" O N N 38 A "C2'" C N R 39 A "O2'" O N N 40 A "C1'" C N R 41 A N9 N Y N 42 A C8 C Y N 43 A N7 N Y N 44 A C5 C Y N 45 A C6 C Y N 46 A N6 N N N 47 A N1 N Y N 48 A C2 C Y N 49 A N3 N Y N 50 A C4 C Y N 51 A HOP3 H N N 52 A HOP2 H N N 53 A "H5'" H N N 54 A "H5''" H N N 55 A "H4'" H N N 56 A "H3'" H N N 57 A "HO3'" H N N 58 A "H2'" H N N 59 A "HO2'" H N N 60 A "H1'" H N N 61 A H8 H N N 62 A H61 H N N 63 A H62 H N N 64 A H2 H N N 65 C OP3 O N N 66 C P P N N 67 C OP1 O N N 68 C OP2 O N N 69 C "O5'" O N N 70 C "C5'" C N N 71 C "C4'" C N R 72 C "O4'" O N N 73 C "C3'" C N S 74 C "O3'" O N N 75 C "C2'" C N R 76 C "O2'" O N N 77 C "C1'" C N R 78 C N1 N N N 79 C C2 C N N 80 C O2 O N N 81 C N3 N N N 82 C C4 C N N 83 C N4 N N N 84 C C5 C N N 85 C C6 C N N 86 C HOP3 H N N 87 C HOP2 H N N 88 C "H5'" H N N 89 C "H5''" H N N 90 C "H4'" H N N 91 C "H3'" H N N 92 C "HO3'" H N N 93 C "H2'" H N N 94 C "HO2'" H N N 95 C "H1'" H N N 96 C H41 H N N 97 C H42 H N N 98 C H5 H N N 99 C H6 H N N 100 CCC PC P N S 101 CCC O1C O N N 102 CCC O2C O N N 103 CCC P P N N 104 CCC OP1 O N N 105 CCC OP2 O N N 106 CCC OP3 O N N 107 CCC "O5'" O N N 108 CCC "C5'" C N N 109 CCC "C4'" C N R 110 CCC "O4'" O N N 111 CCC "C3'" C N R 112 CCC "O3'" O N N 113 CCC "C2'" C N R 114 CCC "O2'" O N N 115 CCC "C1'" C N R 116 CCC N1 N N N 117 CCC C2 C N N 118 CCC O2 O N N 119 CCC N3 N N N 120 CCC C4 C N N 121 CCC N4 N N N 122 CCC C5 C N N 123 CCC C6 C N N 124 CCC HOC2 H N N 125 CCC HOP2 H N N 126 CCC HOP3 H N N 127 CCC "H5'" H N N 128 CCC "H5''" H N N 129 CCC "H4'" H N N 130 CCC "H3'" H N N 131 CCC "H2'" H N N 132 CCC "H1'" H N N 133 CCC H41 H N N 134 CCC H42 H N N 135 CCC H5 H N N 136 CCC H6 H N N 137 FRU C1 C N N 138 FRU C2 C N R 139 FRU C3 C N S 140 FRU C4 C N S 141 FRU C5 C N R 142 FRU C6 C N N 143 FRU O1 O N N 144 FRU O2 O N N 145 FRU O3 O N N 146 FRU O4 O N N 147 FRU O5 O N N 148 FRU O6 O N N 149 FRU H11 H N N 150 FRU H12 H N N 151 FRU H3 H N N 152 FRU H4 H N N 153 FRU H5 H N N 154 FRU H61 H N N 155 FRU H62 H N N 156 FRU HO1 H N N 157 FRU HO2 H N N 158 FRU HO3 H N N 159 FRU HO4 H N N 160 FRU HO6 H N N 161 G OP3 O N N 162 G P P N N 163 G OP1 O N N 164 G OP2 O N N 165 G "O5'" O N N 166 G "C5'" C N N 167 G "C4'" C N R 168 G "O4'" O N N 169 G "C3'" C N S 170 G "O3'" O N N 171 G "C2'" C N R 172 G "O2'" O N N 173 G "C1'" C N R 174 G N9 N Y N 175 G C8 C Y N 176 G N7 N Y N 177 G C5 C Y N 178 G C6 C N N 179 G O6 O N N 180 G N1 N N N 181 G C2 C N N 182 G N2 N N N 183 G N3 N N N 184 G C4 C Y N 185 G HOP3 H N N 186 G HOP2 H N N 187 G "H5'" H N N 188 G "H5''" H N N 189 G "H4'" H N N 190 G "H3'" H N N 191 G "HO3'" H N N 192 G "H2'" H N N 193 G "HO2'" H N N 194 G "H1'" H N N 195 G H8 H N N 196 G H1 H N N 197 G H21 H N N 198 G H22 H N N 199 GLC C1 C N S 200 GLC C2 C N R 201 GLC C3 C N S 202 GLC C4 C N S 203 GLC C5 C N R 204 GLC C6 C N N 205 GLC O1 O N N 206 GLC O2 O N N 207 GLC O3 O N N 208 GLC O4 O N N 209 GLC O5 O N N 210 GLC O6 O N N 211 GLC H1 H N N 212 GLC H2 H N N 213 GLC H3 H N N 214 GLC H4 H N N 215 GLC H5 H N N 216 GLC H61 H N N 217 GLC H62 H N N 218 GLC HO1 H N N 219 GLC HO2 H N N 220 GLC HO3 H N N 221 GLC HO4 H N N 222 GLC HO6 H N N 223 HOH O O N N 224 HOH H1 H N N 225 HOH H2 H N N 226 K K K N N 227 MG MG MG N N 228 U OP3 O N N 229 U P P N N 230 U OP1 O N N 231 U OP2 O N N 232 U "O5'" O N N 233 U "C5'" C N N 234 U "C4'" C N R 235 U "O4'" O N N 236 U "C3'" C N S 237 U "O3'" O N N 238 U "C2'" C N R 239 U "O2'" O N N 240 U "C1'" C N R 241 U N1 N N N 242 U C2 C N N 243 U O2 O N N 244 U N3 N N N 245 U C4 C N N 246 U O4 O N N 247 U C5 C N N 248 U C6 C N N 249 U HOP3 H N N 250 U HOP2 H N N 251 U "H5'" H N N 252 U "H5''" H N N 253 U "H4'" H N N 254 U "H3'" H N N 255 U "HO3'" H N N 256 U "H2'" H N N 257 U "HO2'" H N N 258 U "H1'" H N N 259 U H3 H N N 260 U H5 H N N 261 U H6 H N N 262 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 38E O C9 doub N N 1 38E F C sing N N 2 38E C5 C doub Y N 3 38E C5 C4 sing Y N 4 38E C6 C4 sing N N 5 38E C6 C7 doub N Z 6 38E C9 C7 sing N N 7 38E C9 N1 sing N N 8 38E C C1 sing Y N 9 38E C4 C3 doub Y N 10 38E C7 N sing N N 11 38E C10 N1 sing N N 12 38E N1 C8 sing N N 13 38E C1 O1 sing N N 14 38E C1 C2 doub Y N 15 38E C3 C2 sing Y N 16 38E N C8 doub N N 17 38E C8 C11 sing N N 18 38E C2 F1 sing N N 19 38E O1 H1 sing N N 20 38E C3 H2 sing N N 21 38E C5 H3 sing N N 22 38E C6 H4 sing N N 23 38E C10 H5 sing N N 24 38E C10 H6 sing N N 25 38E C10 H7 sing N N 26 38E C11 H8 sing N N 27 38E C11 H9 sing N N 28 38E C11 H10 sing N N 29 A OP3 P sing N N 30 A OP3 HOP3 sing N N 31 A P OP1 doub N N 32 A P OP2 sing N N 33 A P "O5'" sing N N 34 A OP2 HOP2 sing N N 35 A "O5'" "C5'" sing N N 36 A "C5'" "C4'" sing N N 37 A "C5'" "H5'" sing N N 38 A "C5'" "H5''" sing N N 39 A "C4'" "O4'" sing N N 40 A "C4'" "C3'" sing N N 41 A "C4'" "H4'" sing N N 42 A "O4'" "C1'" sing N N 43 A "C3'" "O3'" sing N N 44 A "C3'" "C2'" sing N N 45 A "C3'" "H3'" sing N N 46 A "O3'" "HO3'" sing N N 47 A "C2'" "O2'" sing N N 48 A "C2'" "C1'" sing N N 49 A "C2'" "H2'" sing N N 50 A "O2'" "HO2'" sing N N 51 A "C1'" N9 sing N N 52 A "C1'" "H1'" sing N N 53 A N9 C8 sing Y N 54 A N9 C4 sing Y N 55 A C8 N7 doub Y N 56 A C8 H8 sing N N 57 A N7 C5 sing Y N 58 A C5 C6 sing Y N 59 A C5 C4 doub Y N 60 A C6 N6 sing N N 61 A C6 N1 doub Y N 62 A N6 H61 sing N N 63 A N6 H62 sing N N 64 A N1 C2 sing Y N 65 A C2 N3 doub Y N 66 A C2 H2 sing N N 67 A N3 C4 sing Y N 68 C OP3 P sing N N 69 C OP3 HOP3 sing N N 70 C P OP1 doub N N 71 C P OP2 sing N N 72 C P "O5'" sing N N 73 C OP2 HOP2 sing N N 74 C "O5'" "C5'" sing N N 75 C "C5'" "C4'" sing N N 76 C "C5'" "H5'" sing N N 77 C "C5'" "H5''" sing N N 78 C "C4'" "O4'" sing N N 79 C "C4'" "C3'" sing N N 80 C "C4'" "H4'" sing N N 81 C "O4'" "C1'" sing N N 82 C "C3'" "O3'" sing N N 83 C "C3'" "C2'" sing N N 84 C "C3'" "H3'" sing N N 85 C "O3'" "HO3'" sing N N 86 C "C2'" "O2'" sing N N 87 C "C2'" "C1'" sing N N 88 C "C2'" "H2'" sing N N 89 C "O2'" "HO2'" sing N N 90 C "C1'" N1 sing N N 91 C "C1'" "H1'" sing N N 92 C N1 C2 sing N N 93 C N1 C6 sing N N 94 C C2 O2 doub N N 95 C C2 N3 sing N N 96 C N3 C4 doub N N 97 C C4 N4 sing N N 98 C C4 C5 sing N N 99 C N4 H41 sing N N 100 C N4 H42 sing N N 101 C C5 C6 doub N N 102 C C5 H5 sing N N 103 C C6 H6 sing N N 104 CCC PC O1C doub N N 105 CCC PC O2C sing N N 106 CCC PC "O3'" sing N N 107 CCC PC "O2'" sing N N 108 CCC O2C HOC2 sing N N 109 CCC P OP1 doub N N 110 CCC P OP2 sing N N 111 CCC P OP3 sing N N 112 CCC P "O5'" sing N N 113 CCC OP2 HOP2 sing N N 114 CCC OP3 HOP3 sing N N 115 CCC "O5'" "C5'" sing N N 116 CCC "C5'" "C4'" sing N N 117 CCC "C5'" "H5'" sing N N 118 CCC "C5'" "H5''" sing N N 119 CCC "C4'" "O4'" sing N N 120 CCC "C4'" "C3'" sing N N 121 CCC "C4'" "H4'" sing N N 122 CCC "O4'" "C1'" sing N N 123 CCC "C3'" "O3'" sing N N 124 CCC "C3'" "C2'" sing N N 125 CCC "C3'" "H3'" sing N N 126 CCC "C2'" "O2'" sing N N 127 CCC "C2'" "C1'" sing N N 128 CCC "C2'" "H2'" sing N N 129 CCC "C1'" N1 sing N N 130 CCC "C1'" "H1'" sing N N 131 CCC N1 C2 sing N N 132 CCC N1 C6 sing N N 133 CCC C2 O2 doub N N 134 CCC C2 N3 sing N N 135 CCC N3 C4 doub N N 136 CCC C4 N4 sing N N 137 CCC C4 C5 sing N N 138 CCC N4 H41 sing N N 139 CCC N4 H42 sing N N 140 CCC C5 C6 doub N N 141 CCC C5 H5 sing N N 142 CCC C6 H6 sing N N 143 FRU C1 C2 sing N N 144 FRU C1 O1 sing N N 145 FRU C1 H11 sing N N 146 FRU C1 H12 sing N N 147 FRU C2 C3 sing N N 148 FRU C2 O2 sing N N 149 FRU C2 O5 sing N N 150 FRU C3 C4 sing N N 151 FRU C3 O3 sing N N 152 FRU C3 H3 sing N N 153 FRU C4 C5 sing N N 154 FRU C4 O4 sing N N 155 FRU C4 H4 sing N N 156 FRU C5 C6 sing N N 157 FRU C5 O5 sing N N 158 FRU C5 H5 sing N N 159 FRU C6 O6 sing N N 160 FRU C6 H61 sing N N 161 FRU C6 H62 sing N N 162 FRU O1 HO1 sing N N 163 FRU O2 HO2 sing N N 164 FRU O3 HO3 sing N N 165 FRU O4 HO4 sing N N 166 FRU O6 HO6 sing N N 167 G OP3 P sing N N 168 G OP3 HOP3 sing N N 169 G P OP1 doub N N 170 G P OP2 sing N N 171 G P "O5'" sing N N 172 G OP2 HOP2 sing N N 173 G "O5'" "C5'" sing N N 174 G "C5'" "C4'" sing N N 175 G "C5'" "H5'" sing N N 176 G "C5'" "H5''" sing N N 177 G "C4'" "O4'" sing N N 178 G "C4'" "C3'" sing N N 179 G "C4'" "H4'" sing N N 180 G "O4'" "C1'" sing N N 181 G "C3'" "O3'" sing N N 182 G "C3'" "C2'" sing N N 183 G "C3'" "H3'" sing N N 184 G "O3'" "HO3'" sing N N 185 G "C2'" "O2'" sing N N 186 G "C2'" "C1'" sing N N 187 G "C2'" "H2'" sing N N 188 G "O2'" "HO2'" sing N N 189 G "C1'" N9 sing N N 190 G "C1'" "H1'" sing N N 191 G N9 C8 sing Y N 192 G N9 C4 sing Y N 193 G C8 N7 doub Y N 194 G C8 H8 sing N N 195 G N7 C5 sing Y N 196 G C5 C6 sing N N 197 G C5 C4 doub Y N 198 G C6 O6 doub N N 199 G C6 N1 sing N N 200 G N1 C2 sing N N 201 G N1 H1 sing N N 202 G C2 N2 sing N N 203 G C2 N3 doub N N 204 G N2 H21 sing N N 205 G N2 H22 sing N N 206 G N3 C4 sing N N 207 GLC C1 C2 sing N N 208 GLC C1 O1 sing N N 209 GLC C1 O5 sing N N 210 GLC C1 H1 sing N N 211 GLC C2 C3 sing N N 212 GLC C2 O2 sing N N 213 GLC C2 H2 sing N N 214 GLC C3 C4 sing N N 215 GLC C3 O3 sing N N 216 GLC C3 H3 sing N N 217 GLC C4 C5 sing N N 218 GLC C4 O4 sing N N 219 GLC C4 H4 sing N N 220 GLC C5 C6 sing N N 221 GLC C5 O5 sing N N 222 GLC C5 H5 sing N N 223 GLC C6 O6 sing N N 224 GLC C6 H61 sing N N 225 GLC C6 H62 sing N N 226 GLC O1 HO1 sing N N 227 GLC O2 HO2 sing N N 228 GLC O3 HO3 sing N N 229 GLC O4 HO4 sing N N 230 GLC O6 HO6 sing N N 231 HOH O H1 sing N N 232 HOH O H2 sing N N 233 U OP3 P sing N N 234 U OP3 HOP3 sing N N 235 U P OP1 doub N N 236 U P OP2 sing N N 237 U P "O5'" sing N N 238 U OP2 HOP2 sing N N 239 U "O5'" "C5'" sing N N 240 U "C5'" "C4'" sing N N 241 U "C5'" "H5'" sing N N 242 U "C5'" "H5''" sing N N 243 U "C4'" "O4'" sing N N 244 U "C4'" "C3'" sing N N 245 U "C4'" "H4'" sing N N 246 U "O4'" "C1'" sing N N 247 U "C3'" "O3'" sing N N 248 U "C3'" "C2'" sing N N 249 U "C3'" "H3'" sing N N 250 U "O3'" "HO3'" sing N N 251 U "C2'" "O2'" sing N N 252 U "C2'" "C1'" sing N N 253 U "C2'" "H2'" sing N N 254 U "O2'" "HO2'" sing N N 255 U "C1'" N1 sing N N 256 U "C1'" "H1'" sing N N 257 U N1 C2 sing N N 258 U N1 C6 sing N N 259 U C2 O2 doub N N 260 U C2 N3 sing N N 261 U N3 C4 sing N N 262 U N3 H3 sing N N 263 U C4 O4 doub N N 264 U C4 C5 sing N N 265 U C5 C6 doub N N 266 U C5 H5 sing N N 267 U C6 H6 sing N N 268 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4TS2 'double helix' 4TS2 'a-form double helix' 4TS2 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B CCC 47 1_555 0.868 -0.528 1.285 4.322 -0.544 1.203 1 X_G1:CCC101_Y X 1 ? Y 101 ? 19 1 1 A A 2 1_555 B U 46 1_555 -0.608 0.400 0.382 1.983 -6.802 6.846 2 X_A2:U94_Y X 2 ? Y 94 ? 20 1 1 A C 3 1_555 B G 45 1_555 -0.682 0.063 0.487 2.556 -8.217 2.871 3 X_C3:G93_Y X 3 ? Y 93 ? 19 1 1 A G 4 1_555 B C 44 1_555 0.850 0.049 0.468 1.721 -10.351 5.272 4 X_G4:C92_Y X 4 ? Y 92 ? 19 1 1 A C 5 1_555 B G 43 1_555 -0.140 0.145 0.513 -1.288 -9.492 5.499 5 X_C5:G91_Y X 5 ? Y 91 ? 19 1 1 A G 6 1_555 B C 42 1_555 -0.165 -0.403 0.371 -0.465 -9.546 -0.794 6 X_G6:C90_Y X 6 ? Y 90 ? 19 1 1 A A 7 1_555 B U 41 1_555 -0.271 -0.453 0.061 1.998 -2.993 -6.949 7 X_A7:U89_Y X 7 ? Y 89 ? 20 1 1 A C 8 1_555 B G 40 1_555 0.618 -0.674 0.227 3.117 -6.524 -2.990 8 X_C8:G88_Y X 8 ? Y 88 ? 19 1 1 A C 9 1_555 B G 39 1_555 -0.054 -0.230 -0.071 0.206 -5.654 -3.298 9 X_C9:G87_Y X 9 ? Y 87 ? 19 1 1 A A 12 1_555 B U 38 1_555 0.368 -0.262 -0.004 -9.243 -2.263 -4.067 10 X_A12:U86_Y X 12 ? Y 86 ? 20 1 1 A G 14 1_555 B C 37 1_555 -0.309 -0.162 -0.199 -15.183 -8.717 -0.505 11 X_G14:C85_Y X 14 ? Y 85 ? 19 1 1 A A 17 1_555 B U 34 1_555 0.053 0.016 -0.289 4.306 -16.133 13.772 12 X_A17:U82_Y X 17 ? Y 82 ? 20 1 1 A U 18 1_555 B G 33 1_555 3.358 0.403 -0.543 4.332 -7.748 34.097 13 X_U18:G81_Y X 18 ? Y 81 ? ? 5 1 A G 19 1_555 B C 32 1_555 -0.686 -0.084 -0.019 0.934 -3.326 4.785 14 X_G19:C80_Y X 19 ? Y 80 ? 19 1 1 A G 20 1_555 B C 31 1_555 -0.972 -0.566 0.201 2.186 -13.179 2.512 15 X_G20:C79_Y X 20 ? Y 79 ? 19 1 1 A U 21 1_555 B U 30 1_555 -2.397 -1.914 0.683 -1.865 -18.334 3.499 16 X_U21:U78_Y X 21 ? Y 78 ? 16 1 1 A G 22 1_555 B C 29 1_555 -0.579 -0.036 -0.362 -24.638 -14.085 3.533 17 X_G22:C77_Y X 22 ? Y 77 ? 19 1 1 A A 23 1_555 B G 28 1_555 -0.511 1.522 -0.139 -16.350 -0.762 -17.881 18 X_A23:G76_Y X 23 ? Y 76 ? 8 1 1 A A 24 1_555 B A 27 1_555 3.314 1.788 -0.624 -8.205 4.526 -31.644 19 X_A24:A75_Y X 24 ? Y 75 ? ? ? 1 B U 18 1_555 B U 25 1_555 -1.362 -4.130 1.048 -17.290 13.123 -134.821 20 Y_U66:U73_Y Y 66 ? Y 73 ? ? ? 1 B G 20 1_555 B G 24 1_555 -1.683 -3.168 -0.903 27.138 -9.558 93.136 21 Y_G68:G72_Y Y 68 ? Y 72 ? 6 3 1 A G 26 1_555 B G 17 1_555 -1.501 -3.521 -0.346 4.864 -4.505 91.289 22 X_G26:G65_Y X 26 ? Y 65 ? 6 3 1 A U 32 1_555 B A 16 1_555 -0.027 -0.105 -0.373 2.397 2.926 -3.403 23 X_U32:A64_Y X 32 ? Y 64 ? 20 1 1 A C 33 1_555 B G 15 1_555 0.146 -0.194 -0.312 10.773 -6.303 -3.988 24 X_C33:G63_Y X 33 ? Y 63 ? 19 1 1 A C 34 1_555 B G 12 1_555 -0.043 -0.136 -0.081 3.811 -9.162 -3.916 25 X_C34:G60_Y X 34 ? Y 60 ? 19 1 1 A A 35 1_555 B U 11 1_555 -0.150 -0.259 0.248 2.113 -8.784 0.382 26 X_A35:U59_Y X 35 ? Y 59 ? 20 1 1 A G 36 1_555 B C 9 1_555 -0.524 -0.560 0.497 1.743 -17.294 -4.746 27 X_G36:C57_Y X 36 ? Y 57 ? 19 1 1 A C 37 1_555 B G 8 1_555 0.118 0.166 -0.066 6.423 -13.130 2.803 28 X_C37:G56_Y X 37 ? Y 56 ? 19 1 1 A C 38 1_555 B G 7 1_555 0.273 0.712 0.118 5.726 -16.856 4.872 29 X_C38:G55_Y X 38 ? Y 55 ? ? 1 1 A G 39 1_555 B C 6 1_555 -1.124 -0.340 0.004 0.792 -11.258 -5.580 30 X_G39:C54_Y X 39 ? Y 54 ? 19 1 1 A G 40 1_555 B C 5 1_555 0.168 0.022 -0.083 -14.350 -12.740 -1.391 31 X_G40:C53_Y X 40 ? Y 53 ? 19 1 1 A C 41 1_555 B G 4 1_555 0.074 -0.069 0.142 4.739 -12.561 -2.117 32 X_C41:G52_Y X 41 ? Y 52 ? 19 1 1 A U 42 1_555 B A 3 1_555 -0.201 -0.018 -0.144 6.503 -17.841 -7.033 33 X_U42:A51_Y X 42 ? Y 51 ? 20 1 1 A G 43 1_555 B C 2 1_555 0.433 -0.105 0.195 -13.253 -7.775 -3.258 34 X_G43:C50_Y X 43 ? Y 50 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B CCC 47 1_555 A A 2 1_555 B U 46 1_555 -0.905 -1.426 3.555 3.909 -0.398 21.287 -3.628 4.068 3.362 -1.064 -10.468 21.643 1 XX_G1A2:U94CCC101_YY X 1 ? Y 101 ? X 2 ? Y 94 ? 1 A A 2 1_555 B U 46 1_555 A C 3 1_555 B G 45 1_555 0.847 -1.330 3.070 -1.599 8.008 34.466 -3.235 -1.602 2.663 13.285 2.652 35.392 2 XX_A2C3:G93U94_YY X 2 ? Y 94 ? X 3 ? Y 93 ? 1 A C 3 1_555 B G 45 1_555 A G 4 1_555 B C 44 1_555 -0.141 -1.733 2.861 -0.468 8.513 36.209 -3.645 0.169 2.408 13.468 0.741 37.166 3 XX_C3G4:C92G93_YY X 3 ? Y 93 ? X 4 ? Y 92 ? 1 A G 4 1_555 B C 44 1_555 A C 5 1_555 B G 43 1_555 0.046 -1.811 3.267 -0.327 2.820 29.980 -4.047 -0.153 3.087 5.435 0.631 30.111 4 XX_G4C5:G91C92_YY X 4 ? Y 92 ? X 5 ? Y 91 ? 1 A C 5 1_555 B G 43 1_555 A G 6 1_555 B C 42 1_555 -0.278 -2.086 2.834 -1.297 7.236 31.412 -4.785 0.317 2.317 13.140 2.356 32.240 5 XX_C5G6:C90G91_YY X 5 ? Y 91 ? X 6 ? Y 90 ? 1 A G 6 1_555 B C 42 1_555 A A 7 1_555 B U 41 1_555 -0.799 -1.929 3.022 -1.818 4.185 28.907 -4.626 1.231 2.765 8.318 3.614 29.258 6 XX_G6A7:U89C90_YY X 6 ? Y 90 ? X 7 ? Y 89 ? 1 A A 7 1_555 B U 41 1_555 A C 8 1_555 B G 40 1_555 0.579 -1.453 3.169 -2.911 2.875 40.461 -2.393 -1.139 3.016 4.143 4.196 40.659 7 XX_A7C8:G88U89_YY X 7 ? Y 89 ? X 8 ? Y 88 ? 1 A C 8 1_555 B G 40 1_555 A C 9 1_555 B G 39 1_555 -0.562 -2.118 3.215 4.076 6.855 29.892 -5.172 1.766 2.580 13.001 -7.730 30.915 8 XX_C8C9:G87G88_YY X 8 ? Y 88 ? X 9 ? Y 87 ? 1 A C 9 1_555 B G 39 1_555 A A 12 1_555 B U 38 1_555 -1.712 -2.045 3.413 0.246 7.073 40.890 -3.635 2.444 3.024 10.034 -0.349 41.472 9 XX_C9A12:U86G87_YY X 9 ? Y 87 ? X 12 ? Y 86 ? 1 A A 12 1_555 B U 38 1_555 A G 14 1_555 B C 37 1_555 -2.592 -1.758 3.176 -2.234 2.904 49.232 -2.316 2.943 3.182 3.480 2.677 49.360 10 XX_A12G14:C85U86_YY X 12 ? Y 86 ? X 14 ? Y 85 ? 1 A G 14 1_555 B C 37 1_555 A A 17 1_555 B U 34 1_555 3.517 0.077 3.356 -12.180 5.003 87.858 -0.046 -2.764 2.952 3.589 8.737 88.640 11 XX_G14A17:U82C85_YY X 14 ? Y 85 ? X 17 ? Y 82 ? 1 A A 17 1_555 B U 34 1_555 A U 18 1_555 B G 33 1_555 0.823 -1.294 3.457 0.833 -1.155 41.477 -1.696 -1.067 3.506 -1.630 -1.176 41.500 12 XX_A17U18:G81U82_YY X 17 ? Y 82 ? X 18 ? Y 81 ? 1 A U 18 1_555 B G 33 1_555 A G 19 1_555 B C 32 1_555 -2.711 -2.707 3.819 -2.827 0.290 6.222 -24.231 7.686 4.480 2.505 24.436 6.840 13 XX_U18G19:C80G81_YY X 18 ? Y 81 ? X 19 ? Y 80 ? 1 A G 19 1_555 B C 32 1_555 A G 20 1_555 B C 31 1_555 0.948 -1.949 3.031 0.948 6.201 25.641 -5.697 -1.858 2.530 13.713 -2.097 26.385 14 XX_G19G20:C79C80_YY X 19 ? Y 80 ? X 20 ? Y 79 ? 1 A G 20 1_555 B C 31 1_555 A U 21 1_555 B U 30 1_555 -0.183 -2.119 3.023 -8.518 6.430 32.090 -4.555 -0.888 2.528 11.250 14.903 33.774 15 XX_G20U21:U78C79_YY X 20 ? Y 79 ? X 21 ? Y 78 ? 1 A U 21 1_555 B U 30 1_555 A G 22 1_555 B C 29 1_555 -0.283 -1.655 3.737 4.609 14.870 40.548 -3.775 0.859 2.936 20.564 -6.374 43.316 16 XX_U21G22:C77U78_YY X 21 ? Y 78 ? X 22 ? Y 77 ? 1 A G 22 1_555 B C 29 1_555 A A 23 1_555 B G 28 1_555 -1.038 -1.747 2.964 -0.988 5.677 30.773 -4.165 1.764 2.639 10.581 1.842 31.295 17 XX_G22A23:G76C77_YY X 22 ? Y 77 ? X 23 ? Y 76 ? 1 A A 23 1_555 B G 28 1_555 A A 24 1_555 B A 27 1_555 -0.728 -1.343 3.287 8.253 3.410 40.285 -2.263 1.895 2.969 4.878 -11.808 41.223 18 XX_A23A24:A75G76_YY X 23 ? Y 76 ? X 24 ? Y 75 ? 1 A A 24 1_555 B A 27 1_555 B U 18 1_555 B U 25 1_555 2.313 -2.059 -4.722 -104.032 -141.589 115.104 -2.032 -0.420 -3.830 -71.065 52.215 177.692 19 XY_A24U66:U73A75_YY X 24 ? Y 75 ? Y 66 ? Y 73 ? 1 B U 18 1_555 B U 25 1_555 B G 20 1_555 B G 24 1_555 -4.942 -0.542 1.666 107.657 -137.591 41.157 -0.325 2.431 -1.865 -70.148 -54.886 175.042 20 YY_U66G68:G72U73_YY Y 66 ? Y 73 ? Y 68 ? Y 72 ? 1 A G 26 1_555 B G 17 1_555 A U 32 1_555 B A 16 1_555 0.888 0.442 6.370 2.102 -4.228 -146.505 -0.194 0.482 6.369 2.207 1.098 -146.534 21 XX_G26U32:A64G65_YY X 26 ? Y 65 ? X 32 ? Y 64 ? 1 A U 32 1_555 B A 16 1_555 A C 33 1_555 B G 15 1_555 0.899 -1.820 3.145 -2.443 7.693 32.963 -4.221 -1.891 2.596 13.311 4.227 33.910 22 XX_U32C33:G63A64_YY X 32 ? Y 64 ? X 33 ? Y 63 ? 1 A C 33 1_555 B G 15 1_555 A C 34 1_555 B G 12 1_555 1.164 -1.876 3.332 0.492 10.436 41.386 -3.583 -1.554 2.813 14.490 -0.683 42.628 23 XX_C33C34:G60G63_YY X 33 ? Y 63 ? X 34 ? Y 60 ? 1 A C 34 1_555 B G 12 1_555 A A 35 1_555 B U 11 1_555 0.901 -2.013 3.346 -6.035 4.040 33.282 -4.059 -2.466 2.886 6.951 10.384 34.044 24 XX_C34A35:U59G60_YY X 34 ? Y 60 ? X 35 ? Y 59 ? 1 A A 35 1_555 B U 11 1_555 A G 36 1_555 B C 9 1_555 1.186 -1.575 3.102 -1.595 4.016 42.946 -2.504 -1.757 2.906 5.469 2.171 43.152 25 XX_A35G36:C57U59_YY X 35 ? Y 59 ? X 36 ? Y 57 ? 1 A G 36 1_555 B C 9 1_555 A C 37 1_555 B G 8 1_555 0.389 -1.736 3.216 1.556 4.504 36.261 -3.359 -0.415 3.000 7.199 -2.487 36.562 26 XX_G36C37:G56C57_YY X 36 ? Y 57 ? X 37 ? Y 56 ? 1 A C 37 1_555 B G 8 1_555 A C 38 1_555 B G 7 1_555 0.679 -1.366 3.144 2.638 5.366 33.987 -3.084 -0.761 2.943 9.093 -4.469 34.494 27 XX_C37C38:G55G56_YY X 37 ? Y 56 ? X 38 ? Y 55 ? 1 A C 38 1_555 B G 7 1_555 A G 39 1_555 B C 6 1_555 -0.387 -2.253 3.128 -0.678 13.939 22.268 -7.848 0.714 1.489 32.330 1.572 26.233 28 XX_C38G39:C54G55_YY X 38 ? Y 55 ? X 39 ? Y 54 ? 1 A G 39 1_555 B C 6 1_555 A G 40 1_555 B C 5 1_555 -0.054 -1.594 3.528 0.722 10.375 44.740 -2.969 0.134 3.102 13.416 -0.933 45.873 29 XX_G39G40:C53C54_YY X 39 ? Y 54 ? X 40 ? Y 53 ? 1 A G 40 1_555 B C 5 1_555 A C 41 1_555 B G 4 1_555 -0.343 -1.052 2.822 -0.637 1.709 26.469 -2.677 0.605 2.757 3.727 1.389 26.531 30 XX_G40C41:G52C53_YY X 40 ? Y 53 ? X 41 ? Y 52 ? 1 A C 41 1_555 B G 4 1_555 A U 42 1_555 B A 3 1_555 0.326 -1.774 3.031 5.153 11.814 26.476 -5.589 0.271 2.092 24.065 -10.497 29.396 31 XX_C41U42:A51G52_YY X 41 ? Y 52 ? X 42 ? Y 51 ? 1 A U 42 1_555 B A 3 1_555 A G 43 1_555 B C 2 1_555 0.558 -1.294 3.810 -5.372 18.004 36.092 -4.022 -1.448 2.780 26.932 8.037 40.545 32 XX_U42G43:C50A51_YY X 42 ? Y 51 ? X 43 ? Y 50 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 GLC 1 n 3 FRU 2 n # _atom_sites.entry_id 4TS2 _atom_sites.fract_transf_matrix[1][1] 0.025077 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020243 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005308 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F K MG N O P # loop_