HEADER OXIDOREDUCTASE,ISOMERASE 18-JUN-14 4TSK TITLE KETOL-ACID REDUCTOISOMERASE FROM ALICYCLOBACILLUS ACIDOCALDARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETOHYDROXY-ACID ISOMEROREDUCTASE,ALPHA-KETO-BETA- COMPND 5 HYDROXYLACYL REDUCTOISOMERASE; COMPND 6 EC: 1.1.1.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. SOURCE 3 ACIDOCALDARIUS; SOURCE 4 ORGANISM_TAXID: 521098; SOURCE 5 STRAIN: DSM 446 / 104-1A; SOURCE 6 ATCC: 27009; SOURCE 7 GENE: ILVC, AACI_2227; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS KETOL-ACID REDUCTOISOMERASE, ROSSMANN FOLD, NADPH-BINDING, KEYWDS 2 OXIDOREDUCTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.B.CAHN,S.BRINKMANN-CHEN,F.H.ARNOLD REVDAT 4 27-SEP-23 4TSK 1 REMARK LINK REVDAT 3 22-NOV-17 4TSK 1 SOURCE REMARK REVDAT 2 19-NOV-14 4TSK 1 JRNL REVDAT 1 09-JUL-14 4TSK 0 JRNL AUTH S.BRINKMANN-CHEN,J.K.CAHN,F.H.ARNOLD JRNL TITL UNCOVERING RARE NADH-PREFERRING KETOL-ACID JRNL TITL 2 REDUCTOISOMERASES. JRNL REF METAB. ENG. V. 26C 17 2014 JRNL REFN ISSN 1096-7184 JRNL PMID 25172159 JRNL DOI 10.1016/J.YMBEN.2014.08.003 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 124.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2701 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2556 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3658 ; 1.998 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5874 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3057 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 626 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 3.125 ; 3.801 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1330 ; 3.119 ; 3.795 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1662 ; 4.181 ; 5.686 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4TSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL K-B FOCUSING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 124.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : 0.93600 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4KQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM POTASSIUM TARTRATE, 200MM REMARK 280 SODIUM CHLORIDE, 100MM IMIDAZOLE PH 8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -124.09900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -124.09900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -124.09900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -124.09900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 335 REMARK 465 ARG A 336 REMARK 465 VAL A 337 REMARK 465 PRO A 338 REMARK 465 ALA A 339 REMARK 465 THR A 340 REMARK 465 ALA A 341 REMARK 465 ASP A 342 REMARK 465 ARG A 343 REMARK 465 ALA A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 163 CD2 REMARK 470 LEU A 179 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 321 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 48.58 -155.92 REMARK 500 ILE A 93 -57.58 -132.78 REMARK 500 ASP A 121 -49.32 -12.32 REMARK 500 LYS A 130 57.99 -90.31 REMARK 500 THR A 181 -166.34 -162.46 REMARK 500 VAL A 197 -67.69 -122.29 REMARK 500 CYS A 199 -60.87 -126.75 REMARK 500 LYS A 328 80.23 -69.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 120 ASP A 121 144.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 O REMARK 620 2 ASP A 190 OD1 85.7 REMARK 620 3 GLU A 226 OE2 112.0 161.3 REMARK 620 4 TLA A 404 O2 109.0 56.6 119.2 REMARK 620 5 TLA A 404 O4 143.5 114.7 54.3 65.8 REMARK 620 6 HOH A 502 O 136.4 59.5 102.0 74.8 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 GLU A 194 OE1 97.7 REMARK 620 3 TLA A 404 O1 171.2 86.6 REMARK 620 4 TLA A 404 O2 90.7 78.2 82.7 REMARK 620 5 HOH A 512 O 97.3 94.2 90.0 169.6 REMARK 620 6 HOH A 523 O 86.4 170.7 88.3 93.5 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 247 O REMARK 620 2 ILE A 250 O 85.6 REMARK 620 3 ASP A 252 OD1 162.0 109.8 REMARK 620 4 GLN A 255 OE1 80.2 139.1 82.0 REMARK 620 5 HOH A 526 O 101.3 120.4 79.5 100.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 405 DBREF 4TSK A 1 344 UNP C8WR67 C8WR67_ALIAD 1 344 SEQADV 4TSK HIS A 345 UNP C8WR67 EXPRESSION TAG SEQADV 4TSK HIS A 346 UNP C8WR67 EXPRESSION TAG SEQADV 4TSK HIS A 347 UNP C8WR67 EXPRESSION TAG SEQADV 4TSK HIS A 348 UNP C8WR67 EXPRESSION TAG SEQADV 4TSK HIS A 349 UNP C8WR67 EXPRESSION TAG SEQADV 4TSK HIS A 350 UNP C8WR67 EXPRESSION TAG SEQRES 1 A 350 MET GLU LYS ILE TYR TYR ASP ALA ASP ILE SER ILE GLN SEQRES 2 A 350 PRO LEU ALA ASP LYS ARG ILE ALA VAL ILE GLY TYR GLY SEQRES 3 A 350 SER GLN GLY HIS ALA HIS ALA GLN ASN LEU ARG ASP SER SEQRES 4 A 350 GLY PHE ASP VAL VAL ILE GLY LEU ARG PRO GLY SER SER SEQRES 5 A 350 TRP ALA LYS ALA GLU ALA ASP GLY PHE ARG VAL MET ALA SEQRES 6 A 350 VAL GLY GLU ALA VAL GLU GLU SER ASP VAL ILE MET ILE SEQRES 7 A 350 LEU LEU PRO ASP GLU ARG GLN PRO ALA VAL TYR GLU ARG SEQRES 8 A 350 GLU ILE ARG PRO TYR LEU THR ALA GLY LYS ALA LEU ALA SEQRES 9 A 350 PHE ALA HIS GLY PHE ASN ILE HIS PHE SER GLN ILE GLN SEQRES 10 A 350 PRO PRO LYS ASP VAL ASP VAL PHE MET VAL ALA PRO LYS SEQRES 11 A 350 GLY PRO GLY HIS LEU VAL ARG ARG VAL TYR GLU ALA GLY SEQRES 12 A 350 GLY GLY VAL PRO ALA LEU ILE ALA VAL HIS GLN ASP ALA SEQRES 13 A 350 SER GLY GLN ALA LYS ASP LEU ALA LEU ALA TYR ALA ARG SEQRES 14 A 350 GLY ILE GLY ALA GLY ARG ALA GLY ILE LEU THR THR THR SEQRES 15 A 350 PHE ARG GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN SEQRES 16 A 350 ALA VAL LEU CYS GLY GLY LEU SER ALA LEU ILE LYS ALA SEQRES 17 A 350 GLY PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU SEQRES 18 A 350 ILE ALA TYR PHE GLU CYS LEU HIS GLU MET LYS LEU ILE SEQRES 19 A 350 VAL ASP LEU ILE TYR GLU GLY GLY LEU GLU TYR MET ARG SEQRES 20 A 350 TYR SER ILE SER ASP THR ALA GLN TRP GLY ASP PHE THR SEQRES 21 A 350 SER GLY PRO ARG ILE ILE ASN GLU GLU THR LYS LYS GLU SEQRES 22 A 350 MET ARG ARG ILE LEU ALA ASP ILE GLN SER GLY ALA PHE SEQRES 23 A 350 ALA LYS SER TRP ILE LEU GLU ASN GLN ALA ASN ARG PRO SEQRES 24 A 350 MET PHE ASN ALA ILE ASN ARG ARG GLU LEU GLU HIS PRO SEQRES 25 A 350 ILE GLU VAL VAL GLY ARG LYS LEU ARG SER MET MET PRO SEQRES 26 A 350 PHE ILE LYS ALA LYS ARG PRO GLY ASP ASP ARG VAL PRO SEQRES 27 A 350 ALA THR ALA ASP ARG ALA HIS HIS HIS HIS HIS HIS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET TLA A 404 10 HET NDP A 405 48 HETNAM MG MAGNESIUM ION HETNAM TLA L(+)-TARTARIC ACID HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 TLA C4 H6 O6 FORMUL 6 NDP C21 H30 N7 O17 P3 FORMUL 7 HOH *46(H2 O) HELIX 1 AA1 TYR A 6 ILE A 10 5 5 HELIX 2 AA2 ILE A 12 ASP A 17 1 6 HELIX 3 AA3 GLY A 26 SER A 39 1 14 HELIX 4 AA4 GLY A 50 ASP A 59 1 10 HELIX 5 AA5 VAL A 66 SER A 73 1 8 HELIX 6 AA6 PRO A 81 GLU A 83 5 3 HELIX 7 AA7 ARG A 84 ILE A 93 1 10 HELIX 8 AA8 ARG A 94 LEU A 97 5 4 HELIX 9 AA9 GLY A 108 PHE A 113 1 6 HELIX 10 AB1 PRO A 132 ALA A 142 1 11 HELIX 11 AB2 GLN A 159 ILE A 171 1 13 HELIX 12 AB3 GLY A 172 ALA A 176 5 5 HELIX 13 AB4 THR A 182 VAL A 197 1 16 HELIX 14 AB5 CYS A 199 ALA A 216 1 18 HELIX 15 AB6 GLN A 219 LEU A 228 1 10 HELIX 16 AB7 LEU A 228 ILE A 250 1 23 HELIX 17 AB8 SER A 251 ILE A 266 1 16 HELIX 18 AB9 ASN A 267 SER A 283 1 17 HELIX 19 AC1 GLY A 284 ALA A 296 1 13 HELIX 20 AC2 ARG A 298 GLU A 310 1 13 HELIX 21 AC3 HIS A 311 MET A 323 1 13 SHEET 1 AA1 9 ILE A 4 TYR A 5 0 SHEET 2 AA1 9 ILE A 178 THR A 180 -1 O ILE A 178 N TYR A 5 SHEET 3 AA1 9 ALA A 148 GLN A 154 1 N ILE A 150 O LEU A 179 SHEET 4 AA1 9 ASP A 123 PRO A 129 -1 N ALA A 128 O LEU A 149 SHEET 5 AA1 9 ALA A 102 PHE A 105 1 N LEU A 103 O ASP A 123 SHEET 6 AA1 9 VAL A 75 ILE A 78 1 N ILE A 76 O ALA A 104 SHEET 7 AA1 9 ARG A 19 ILE A 23 1 N ILE A 23 O MET A 77 SHEET 8 AA1 9 ASP A 42 LEU A 47 1 O VAL A 44 N ILE A 20 SHEET 9 AA1 9 VAL A 63 ALA A 65 1 O MET A 64 N ILE A 45 LINK O ASP A 190 MG MG A 402 1555 1555 2.88 LINK OD1 ASP A 190 MG MG A 402 1555 1555 2.75 LINK OD2 ASP A 190 MG MG A 403 1555 1555 2.02 LINK OE1 GLU A 194 MG MG A 403 1555 1555 2.21 LINK OE2 GLU A 226 MG MG A 402 1555 4544 2.41 LINK O ARG A 247 MG MG A 401 1555 1555 2.45 LINK O ILE A 250 MG MG A 401 1555 1555 2.57 LINK OD1 ASP A 252 MG MG A 401 1555 1555 2.58 LINK OE1 GLN A 255 MG MG A 401 1555 1555 2.60 LINK MG MG A 401 O HOH A 526 1555 1555 2.45 LINK MG MG A 402 O2 TLA A 404 1555 1555 2.80 LINK MG MG A 402 O4 TLA A 404 1555 1555 2.52 LINK MG MG A 402 O HOH A 502 1555 4544 2.55 LINK MG MG A 403 O1 TLA A 404 1555 1555 2.14 LINK MG MG A 403 O2 TLA A 404 1555 1555 2.16 LINK MG MG A 403 O HOH A 512 1555 1555 2.07 LINK MG MG A 403 O HOH A 523 1555 1555 2.14 SITE 1 AC1 7 ARG A 247 TYR A 248 ILE A 250 ASP A 252 SITE 2 AC1 7 GLN A 255 HOH A 519 HOH A 526 SITE 1 AC2 5 ASP A 190 GLU A 194 GLU A 226 TLA A 404 SITE 2 AC2 5 HOH A 502 SITE 1 AC3 5 ASP A 190 GLU A 194 TLA A 404 HOH A 512 SITE 2 AC3 5 HOH A 523 SITE 1 AC4 14 PRO A 132 ASP A 190 GLU A 194 LEU A 198 SITE 2 AC4 14 GLU A 230 ILE A 250 SER A 251 ALA A 254 SITE 3 AC4 14 MG A 402 MG A 403 NDP A 405 HOH A 512 SITE 4 AC4 14 HOH A 515 HOH A 523 SITE 1 AC5 25 TYR A 25 GLY A 26 SER A 27 GLN A 28 SITE 2 AC5 25 ARG A 48 SER A 52 LEU A 79 LEU A 80 SITE 3 AC5 25 PRO A 81 ASP A 82 GLN A 85 VAL A 88 SITE 4 AC5 25 ALA A 106 HIS A 107 GLY A 131 PRO A 132 SITE 5 AC5 25 GLY A 133 SER A 249 ILE A 250 SER A 251 SITE 6 AC5 25 TLA A 404 HOH A 513 HOH A 528 HOH A 536 SITE 7 AC5 25 HOH A 541 CRYST1 124.099 124.099 124.099 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008058 0.00000