HEADER TRANSFERASE 21-JUN-14 4TTJ TITLE CRYSTAL STRUCTURE OF DOUBLE MUTANT E. COLI PURINE NUCLEOSIDE TITLE 2 PHOSPHORYLASE WITH 6 FMC MOLECULES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A, B, D; COMPND 4 SYNONYM: PNP,INOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DEOD, PUP, B4384, JW4347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PURINE NUCLEOSIDE PHOSPHORYLASE, FORMICYN A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.STEFANIC,A.BZOWSKA REVDAT 5 20-DEC-23 4TTJ 1 REMARK REVDAT 4 14-NOV-18 4TTJ 1 COMPND SOURCE DBREF SEQADV REVDAT 3 31-OCT-18 4TTJ 1 JRNL REMARK REVDAT 2 16-MAR-16 4TTJ 1 AUTHOR JRNL REVDAT 1 08-JUL-15 4TTJ 0 JRNL AUTH Z.STEFANIC,M.NARCZYK,G.MIKLEUSEVIC,S.KAZAZIC,A.BZOWSKA, JRNL AUTH 2 M.LUIC JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF LIGAND BINDING TO HEXAMERIC JRNL TITL 2 PURINE NUCLEOSIDE PHOSPHORYLASE AND KINETIC STUDIES GIVE JRNL TITL 3 INSIGHT INTO THE MECHANISM OF CATALYSIS. JRNL REF SCI REP V. 8 15427 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30337572 JRNL DOI 10.1038/S41598-018-33723-1 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 84796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1598 - 4.5149 1.00 6384 154 0.1732 0.2049 REMARK 3 2 4.5149 - 3.5840 1.00 6054 147 0.1272 0.1337 REMARK 3 3 3.5840 - 3.1310 1.00 6001 144 0.1420 0.1808 REMARK 3 4 3.1310 - 2.8448 1.00 5944 144 0.1514 0.1869 REMARK 3 5 2.8448 - 2.6409 1.00 5906 142 0.1530 0.2118 REMARK 3 6 2.6409 - 2.4852 1.00 5917 144 0.1524 0.2168 REMARK 3 7 2.4852 - 2.3607 1.00 5875 141 0.1534 0.2036 REMARK 3 8 2.3607 - 2.2580 1.00 5858 142 0.1529 0.1810 REMARK 3 9 2.2580 - 2.1711 1.00 5864 142 0.1628 0.2144 REMARK 3 10 2.1711 - 2.0961 1.00 5837 141 0.1558 0.2062 REMARK 3 11 2.0961 - 2.0306 1.00 5846 140 0.1655 0.2097 REMARK 3 12 2.0306 - 1.9726 1.00 5795 140 0.1807 0.2063 REMARK 3 13 1.9726 - 1.9206 1.00 5811 141 0.2018 0.2300 REMARK 3 14 1.9206 - 1.8738 0.98 5704 138 0.2549 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5715 REMARK 3 ANGLE : 1.138 7760 REMARK 3 CHIRALITY : 0.083 883 REMARK 3 PLANARITY : 0.004 989 REMARK 3 DIHEDRAL : 13.537 2155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.35200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1K9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM CITRIC BUFFER, 32 % AMMONIUM REMARK 280 SULPHATE, PH 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.84600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.69200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.76900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 199.61500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.92300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.84600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 159.69200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 199.61500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.76900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.92300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE TRIMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE OPERATION: -X+Y, Y, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -235.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 60.34800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -104.52580 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.92300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 454 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 470 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 437 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS D 142 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 198 CA CB OG1 CG2 REMARK 480 VAL B 16 CA CB CG1 CG2 REMARK 480 VAL D 16 CA CB CG1 CG2 REMARK 480 LEU D 23 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN D 6 O HOH D 557 2.00 REMARK 500 O HOH A 610 O HOH A 613 2.14 REMARK 500 O HOH A 547 O HOH A 549 2.15 REMARK 500 OE1 GLU D 30 O HOH D 401 2.16 REMARK 500 OE1 GLN D 211 O HOH D 402 2.16 REMARK 500 O HOH B 586 O HOH B 587 2.17 REMARK 500 O HOH A 482 O HOH D 429 2.18 REMARK 500 O HOH D 525 O HOH D 643 2.18 REMARK 500 O HOH A 436 O HOH A 441 2.18 REMARK 500 O HOH D 429 O HOH D 640 2.18 REMARK 500 O HOH A 401 O HOH A 462 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 460 O HOH B 431 6555 2.15 REMARK 500 O HOH D 426 O HOH D 444 10554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 15.15 -142.95 REMARK 500 ARG A 101 -4.00 72.85 REMARK 500 ASP A 163 78.38 -106.89 REMARK 500 GLU A 179 -158.58 -132.96 REMARK 500 GLU A 181 -35.76 -139.28 REMARK 500 ARG B 101 -5.29 74.82 REMARK 500 GLU B 179 -154.37 -138.04 REMARK 500 GLU B 181 -35.27 -136.57 REMARK 500 ALA B 194 -167.58 -121.16 REMARK 500 ASN D 41 10.80 -142.17 REMARK 500 ARG D 43 19.38 57.79 REMARK 500 GLU D 179 -155.08 -141.36 REMARK 500 GLU D 181 -35.13 -141.35 REMARK 500 ARG D 207 -82.50 -103.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 236 LYS B 237 135.23 REMARK 500 ASP D 236 LYS D 237 -146.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMC D 302 DBREF 4TTJ A 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 DBREF 4TTJ B 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 DBREF 4TTJ D 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 SEQADV 4TTJ ALA A 204 UNP P0ABP8 ASP 205 ENGINEERED MUTATION SEQADV 4TTJ ALA A 217 UNP P0ABP8 ARG 218 ENGINEERED MUTATION SEQADV 4TTJ ALA B 204 UNP P0ABP8 ASP 205 ENGINEERED MUTATION SEQADV 4TTJ ALA B 217 UNP P0ABP8 ARG 218 ENGINEERED MUTATION SEQADV 4TTJ ALA D 204 UNP P0ABP8 ASP 205 ENGINEERED MUTATION SEQADV 4TTJ ALA D 217 UNP P0ABP8 ARG 218 ENGINEERED MUTATION SEQRES 1 A 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 A 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 A 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 A 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 A 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 A 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 A 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 A 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 A 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 A 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 A 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 A 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 A 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 A 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 A 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 A 237 ALA LEU THR ILE CYS THR VAL SER ALA HIS ILE ARG THR SEQRES 17 A 237 HIS GLU GLN THR THR ALA ALA GLU ALA GLN THR THR PHE SEQRES 18 A 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 A 237 GLY ASP LYS SEQRES 1 B 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 B 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 B 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 B 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 B 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 B 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 B 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 B 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 B 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 B 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 B 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 B 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 B 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 B 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 B 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 B 237 ALA LEU THR ILE CYS THR VAL SER ALA HIS ILE ARG THR SEQRES 17 B 237 HIS GLU GLN THR THR ALA ALA GLU ALA GLN THR THR PHE SEQRES 18 B 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 B 237 GLY ASP LYS SEQRES 1 D 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 D 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 D 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 D 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 D 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 D 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 D 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 D 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 D 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 D 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 D 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 D 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 D 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 D 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 D 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 D 237 ALA LEU THR ILE CYS THR VAL SER ALA HIS ILE ARG THR SEQRES 17 D 237 HIS GLU GLN THR THR ALA ALA GLU ALA GLN THR THR PHE SEQRES 18 D 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 D 237 GLY ASP LYS HET PO4 A 301 5 HET FMC A 302 19 HET SO4 A 303 5 HET PO4 B 301 5 HET FMC B 302 19 HET SO4 B 303 5 HET SO4 B 304 5 HET PO4 D 301 5 HET FMC D 302 19 HETNAM PO4 PHOSPHATE ION HETNAM FMC (1S)-1-(7-AMINO-1H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-1,4- HETNAM 2 FMC ANHYDRO-D-RIBITOL HETNAM SO4 SULFATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 5 FMC 3(C10 H13 N5 O4) FORMUL 6 SO4 3(O4 S 2-) FORMUL 13 HOH *845(H2 O) HELIX 1 AA1 ASP A 21 LEU A 33 1 13 HELIX 2 AA2 ASN A 41 MET A 45 5 5 HELIX 3 AA3 GLY A 65 PHE A 80 1 16 HELIX 4 AA4 LYS A 114 PHE A 120 1 7 HELIX 5 AA5 ASP A 130 GLY A 145 1 16 HELIX 6 AA6 GLU A 165 TYR A 173 1 9 HELIX 7 AA7 GLU A 181 GLY A 193 1 13 HELIX 8 AA8 THR A 213 THR A 220 1 8 HELIX 9 AA9 PHE A 221 LYS A 237 1 17 HELIX 10 AB1 PRO B 22 LEU B 33 1 12 HELIX 11 AB2 ASN B 41 MET B 45 5 5 HELIX 12 AB3 GLY B 65 GLY B 81 1 17 HELIX 13 AB4 LYS B 114 PHE B 120 1 7 HELIX 14 AB5 ASP B 130 LEU B 144 1 15 HELIX 15 AB6 GLY B 164 TYR B 173 1 10 HELIX 16 AB7 GLU B 181 GLY B 193 1 13 HELIX 17 AB8 THR B 213 LYS B 237 1 25 HELIX 18 AB9 ASP D 21 LEU D 33 1 13 HELIX 19 AC1 ASN D 41 MET D 45 5 5 HELIX 20 AC2 GLY D 65 PHE D 80 1 16 HELIX 21 AC3 LYS D 114 PHE D 120 1 7 HELIX 22 AC4 ASP D 130 LEU D 144 1 15 HELIX 23 AC5 GLU D 165 TYR D 173 1 9 HELIX 24 AC6 GLU D 181 GLY D 193 1 13 HELIX 25 AC7 THR D 213 LYS D 237 1 25 SHEET 1 AA110 GLU A 34 ASN A 40 0 SHEET 2 AA110 GLY A 47 TYR A 52 -1 O THR A 51 N GLU A 34 SHEET 3 AA110 ARG A 55 MET A 60 -1 O VAL A 59 N PHE A 48 SHEET 4 AA110 VAL A 15 MET A 18 1 N LEU A 17 O SER A 58 SHEET 5 AA110 LYS A 84 ALA A 93 1 O ILE A 86 N MET A 18 SHEET 6 AA110 LYS A 195 HIS A 205 1 O ILE A 199 N ARG A 87 SHEET 7 AA110 VAL A 103 THR A 111 -1 N VAL A 104 O CYS A 200 SHEET 8 AA110 ALA A 148 SER A 155 1 O ARG A 149 N ILE A 105 SHEET 9 AA110 GLY A 177 GLU A 179 1 O GLU A 179 N PHE A 154 SHEET 10 AA110 LYS A 84 ALA A 93 -1 N GLY A 92 O VAL A 178 SHEET 1 AA210 GLU B 34 ASN B 40 0 SHEET 2 AA210 GLY B 47 TYR B 52 -1 O GLY B 47 N VAL B 39 SHEET 3 AA210 ARG B 55 MET B 60 -1 O ILE B 57 N GLY B 50 SHEET 4 AA210 VAL B 15 MET B 18 1 N LEU B 17 O SER B 58 SHEET 5 AA210 LYS B 84 ALA B 93 1 O ILE B 86 N MET B 18 SHEET 6 AA210 LYS B 195 HIS B 205 1 O ALA B 204 N ALA B 93 SHEET 7 AA210 VAL B 103 THR B 111 -1 N VAL B 104 O CYS B 200 SHEET 8 AA210 ARG B 149 SER B 155 1 O SER B 155 N CYS B 110 SHEET 9 AA210 GLY B 177 GLU B 179 1 O GLU B 179 N PHE B 154 SHEET 10 AA210 LYS B 84 ALA B 93 -1 N GLY B 92 O VAL B 178 SHEET 1 AA310 GLU D 34 ASN D 40 0 SHEET 2 AA310 GLY D 47 TYR D 52 -1 O GLY D 47 N VAL D 39 SHEET 3 AA310 ARG D 55 MET D 60 -1 O VAL D 59 N PHE D 48 SHEET 4 AA310 VAL D 15 MET D 18 1 N LEU D 17 O SER D 58 SHEET 5 AA310 LYS D 84 ALA D 93 1 O ILE D 86 N MET D 18 SHEET 6 AA310 LYS D 195 HIS D 205 1 O ILE D 199 N ARG D 87 SHEET 7 AA310 VAL D 103 THR D 111 -1 N VAL D 104 O CYS D 200 SHEET 8 AA310 ALA D 148 SER D 155 1 O SER D 155 N CYS D 110 SHEET 9 AA310 GLY D 177 GLU D 179 1 O GLU D 179 N PHE D 154 SHEET 10 AA310 LYS D 84 ALA D 93 -1 N GLY D 92 O VAL D 178 SITE 1 AC1 8 PRO A 19 GLY A 20 ARG A 24 ARG A 87 SITE 2 AC1 8 GLY A 89 SER A 90 FMC A 302 ARG D 43 SITE 1 AC2 18 MET A 64 ARG A 87 SER A 90 CYS A 91 SITE 2 AC2 18 GLY A 92 PHE A 159 VAL A 178 GLU A 179 SITE 3 AC2 18 MET A 180 GLU A 181 SER A 203 PO4 A 301 SITE 4 AC2 18 HOH A 537 HOH A 584 HOH A 634 HOH A 684 SITE 5 AC2 18 HIS D 4 ARG D 43 SITE 1 AC3 6 ASN A 222 ASP A 223 HOH A 527 HOH A 533 SITE 2 AC3 6 HOH A 564 HOH A 637 SITE 1 AC4 8 GLY B 20 ARG B 43 ARG B 87 GLY B 89 SITE 2 AC4 8 SER B 90 FMC B 302 HOH B 401 HOH B 403 SITE 1 AC5 17 HIS B 4 ARG B 43 MET B 64 ARG B 87 SITE 2 AC5 17 SER B 90 CYS B 91 GLY B 92 PHE B 159 SITE 3 AC5 17 VAL B 178 GLU B 179 MET B 180 GLU B 181 SITE 4 AC5 17 ILE B 206 PO4 B 301 HOH B 434 HOH B 559 SITE 5 AC5 17 HOH B 584 SITE 1 AC6 4 LYS B 99 LEU B 100 HIS B 205 GLU B 210 SITE 1 AC7 3 GLN B 218 THR B 219 ASN B 222 SITE 1 AC8 8 ARG A 43 GLY D 20 ARG D 87 GLY D 89 SITE 2 AC8 8 SER D 90 FMC D 302 HOH D 461 HOH D 600 SITE 1 AC9 15 HIS A 4 ARG A 43 MET D 64 ARG D 87 SITE 2 AC9 15 SER D 90 CYS D 91 GLY D 92 PHE D 159 SITE 3 AC9 15 VAL D 178 GLU D 179 MET D 180 GLU D 181 SITE 4 AC9 15 PO4 D 301 HOH D 569 HOH D 679 CRYST1 120.696 120.696 239.538 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008285 0.004784 0.000000 0.00000 SCALE2 0.000000 0.009567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004175 0.00000