HEADER VIRAL PROTEIN 23-JUN-14 4TU0 TITLE CRYSTAL STRUCTURE OF CHIKUNGUNYA VIRUS NSP3 MACRO DOMAIN IN COMPLEX TITLE 2 WITH A 2'-5' OLIGOADENYLATE TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL POLYPROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1334-1493; COMPND 5 SYNONYM: NSP3; COMPND 6 EC: 2.1.1.-,2.7.7.-,3.1.3.33,3.4.22.-,3.6.1.15,3.6.4.13,2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 2'-5' OLIGOADENYLATE TRIMER; COMPND 10 CHAIN: F, G; COMPND 11 SYNONYM: RNA (2'-R(*AP*AP*ATP)-5''); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHIKUNGUNYA VIRUS; SOURCE 3 ORGANISM_COMMON: CHIKV; SOURCE 4 ORGANISM_TAXID: 37124; SOURCE 5 STRAIN: S27-AFRICAN PROTOTYPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS IQ (BIOLABS-C3016); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS VIRAL PROTEIN, STRUCTURAL GENOMICS, MARSEILLES STRUCTURAL GENOMICS KEYWDS 2 PROGRAM AT AFMB, MSGP, ATP-BINDING, CYTOPLASM, HELICASE, HYDROLASE, KEYWDS 3 MEMBRANE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA KEYWDS 4 REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MORIN,F.P.FERRON,H.MALET,B.COUTARD,B.CANARD REVDAT 6 20-DEC-23 4TU0 1 REMARK REVDAT 5 30-OCT-19 4TU0 1 REMARK LINK REVDAT 4 12-JUN-19 4TU0 1 JRNL REVDAT 3 11-FEB-15 4TU0 1 REMARK REVDAT 2 10-DEC-14 4TU0 1 REVDAT 1 09-JUL-14 4TU0 0 JRNL AUTH B.MORIN,F.P.FERRON,H.MALET,B.COUTARD,B.CANARD JRNL TITL CRYSTAL STRUCTURE OF CHIKUNGUNYA VIRUS NSP3 MACRO DOMAIN IN JRNL TITL 2 COMPLEX WITH A 2'-5' OLIGOADENYLATE TRIMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4941 REMARK 3 NUCLEIC ACID ATOMS : 149 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5334 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7261 ; 1.774 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 659 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;38.346 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 890 ;17.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3997 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3268 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5281 ; 1.743 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 2.742 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1979 ; 4.468 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 4TU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.86 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 75.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 46% PEG 600, 100MM HEPES, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.22067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.44133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 LYS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -5 REMARK 465 LYS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET C -5 REMARK 465 LYS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 HIS C 2 REMARK 465 MET D -5 REMARK 465 LYS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 HIS D 1 REMARK 465 HIS D 2 REMARK 465 THR D 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A G 1 N6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 P A F 1 O2' A F 2 1.57 REMARK 500 P A G 1 O2' A G 2 1.59 REMARK 500 O HOH B 306 O HOH B 334 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG D 7 N ARG D 7 CA -0.149 REMARK 500 A F 1 P A F 1 OP2 0.130 REMARK 500 A F 1 C5 A F 1 N7 -0.052 REMARK 500 A F 1 N9 A F 1 C4 -0.043 REMARK 500 A F 2 P A F 2 OP2 0.152 REMARK 500 A F 2 N7 A F 2 C8 0.053 REMARK 500 A F 2 N9 A F 2 C4 -0.040 REMARK 500 A G 1 P A G 1 OP2 0.110 REMARK 500 A G 1 C5 A G 1 N7 -0.063 REMARK 500 A G 1 N9 A G 1 C4 -0.056 REMARK 500 A G 2 P A G 2 OP2 0.112 REMARK 500 A G 2 C5 A G 2 N7 -0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 7 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 A F 1 N1 - C2 - N3 ANGL. DEV. = -8.1 DEGREES REMARK 500 A F 1 C2 - N3 - C4 ANGL. DEV. = 9.9 DEGREES REMARK 500 A F 1 N3 - C4 - C5 ANGL. DEV. = -6.9 DEGREES REMARK 500 A F 1 C4 - C5 - N7 ANGL. DEV. = -3.6 DEGREES REMARK 500 A F 1 C5 - N7 - C8 ANGL. DEV. = 4.0 DEGREES REMARK 500 A F 1 N7 - C8 - N9 ANGL. DEV. = -4.1 DEGREES REMARK 500 A F 1 N3 - C4 - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 A F 2 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 A F 2 C3' - C2' - C1' ANGL. DEV. = 5.3 DEGREES REMARK 500 A F 2 C6 - N1 - C2 ANGL. DEV. = 4.0 DEGREES REMARK 500 A F 2 N1 - C2 - N3 ANGL. DEV. = -9.3 DEGREES REMARK 500 A F 2 C2 - N3 - C4 ANGL. DEV. = 10.1 DEGREES REMARK 500 A F 2 N3 - C4 - C5 ANGL. DEV. = -6.7 DEGREES REMARK 500 A F 2 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 A F 2 C5 - N7 - C8 ANGL. DEV. = 3.4 DEGREES REMARK 500 A F 2 N7 - C8 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 A G 1 C6 - N1 - C2 ANGL. DEV. = 3.9 DEGREES REMARK 500 A G 1 N1 - C2 - N3 ANGL. DEV. = -8.4 DEGREES REMARK 500 A G 1 C2 - N3 - C4 ANGL. DEV. = 9.2 DEGREES REMARK 500 A G 1 N3 - C4 - C5 ANGL. DEV. = -6.0 DEGREES REMARK 500 A G 1 C4 - C5 - N7 ANGL. DEV. = -3.1 DEGREES REMARK 500 A G 1 C5 - N7 - C8 ANGL. DEV. = 4.1 DEGREES REMARK 500 A G 1 N7 - C8 - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 A G 1 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 A G 1 N3 - C4 - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 A G 2 C5' - C4' - C3' ANGL. DEV. = -21.8 DEGREES REMARK 500 A G 2 C5' - C4' - O4' ANGL. DEV. = 6.8 DEGREES REMARK 500 A G 2 O4' - C1' - N9 ANGL. DEV. = -7.3 DEGREES REMARK 500 A G 2 N1 - C2 - N3 ANGL. DEV. = -9.1 DEGREES REMARK 500 A G 2 C2 - N3 - C4 ANGL. DEV. = 11.0 DEGREES REMARK 500 A G 2 N3 - C4 - C5 ANGL. DEV. = -7.3 DEGREES REMARK 500 A G 2 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 A G 2 C5 - N7 - C8 ANGL. DEV. = 5.5 DEGREES REMARK 500 A G 2 N7 - C8 - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 A G 2 C8 - N9 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 A G 2 N3 - C4 - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 A G 2 N1 - C6 - N6 ANGL. DEV. = 3.8 DEGREES REMARK 500 A G 2 C5 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 79.65 83.75 REMARK 500 ARG C 161 43.31 -76.13 REMARK 500 MET D 160 13.06 -61.48 REMARK 500 MET D 160 13.06 -60.67 REMARK 500 MET D 160 13.06 -50.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 201 DBREF 4TU0 A 3 162 UNP Q8JUX6 POLN_CHIKS 1334 1493 DBREF 4TU0 B 3 162 UNP Q8JUX6 POLN_CHIKS 1334 1493 DBREF 4TU0 C 3 162 UNP Q8JUX6 POLN_CHIKS 1334 1493 DBREF 4TU0 D 3 162 UNP Q8JUX6 POLN_CHIKS 1334 1493 DBREF 4TU0 F 1 3 PDB 4TU0 4TU0 1 3 DBREF 4TU0 G 1 3 PDB 4TU0 4TU0 1 3 SEQADV 4TU0 MET A -5 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 LYS A -4 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A -3 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A -2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A -1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A 0 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A 1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS A 2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 MET B -5 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 LYS B -4 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B -3 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B -2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B -1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B 0 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B 1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS B 2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 MET C -5 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 LYS C -4 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C -3 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C -2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C -1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C 0 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C 1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS C 2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 MET D -5 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 LYS D -4 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D -3 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D -2 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D -1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D 0 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D 1 UNP Q8JUX6 EXPRESSION TAG SEQADV 4TU0 HIS D 2 UNP Q8JUX6 EXPRESSION TAG SEQRES 1 A 168 MET LYS HIS HIS HIS HIS HIS HIS ALA PRO SER TYR ARG SEQRES 2 A 168 VAL LYS ARG MET ASP ILE ALA LYS ASN ASP GLU GLU CYS SEQRES 3 A 168 VAL VAL ASN ALA ALA ASN PRO ARG GLY LEU PRO GLY ASP SEQRES 4 A 168 GLY VAL CYS LYS ALA VAL TYR LYS LYS TRP PRO GLU SER SEQRES 5 A 168 PHE LYS ASN SER ALA THR PRO VAL GLY THR ALA LYS THR SEQRES 6 A 168 VAL MET CYS GLY THR TYR PRO VAL ILE HIS ALA VAL GLY SEQRES 7 A 168 PRO ASN PHE SER ASN TYR SER GLU SER GLU GLY ASP ARG SEQRES 8 A 168 GLU LEU ALA ALA ALA TYR ARG GLU VAL ALA LYS GLU VAL SEQRES 9 A 168 THR ARG LEU GLY VAL ASN SER VAL ALA ILE PRO LEU LEU SEQRES 10 A 168 SER THR GLY VAL TYR SER GLY GLY LYS ASP ARG LEU THR SEQRES 11 A 168 GLN SER LEU ASN HIS LEU PHE THR ALA MET ASP SER THR SEQRES 12 A 168 ASP ALA ASP VAL VAL ILE TYR CYS ARG ASP LYS GLU TRP SEQRES 13 A 168 GLU LYS LYS ILE SER GLU ALA ILE GLN MET ARG THR SEQRES 1 B 168 MET LYS HIS HIS HIS HIS HIS HIS ALA PRO SER TYR ARG SEQRES 2 B 168 VAL LYS ARG MET ASP ILE ALA LYS ASN ASP GLU GLU CYS SEQRES 3 B 168 VAL VAL ASN ALA ALA ASN PRO ARG GLY LEU PRO GLY ASP SEQRES 4 B 168 GLY VAL CYS LYS ALA VAL TYR LYS LYS TRP PRO GLU SER SEQRES 5 B 168 PHE LYS ASN SER ALA THR PRO VAL GLY THR ALA LYS THR SEQRES 6 B 168 VAL MET CYS GLY THR TYR PRO VAL ILE HIS ALA VAL GLY SEQRES 7 B 168 PRO ASN PHE SER ASN TYR SER GLU SER GLU GLY ASP ARG SEQRES 8 B 168 GLU LEU ALA ALA ALA TYR ARG GLU VAL ALA LYS GLU VAL SEQRES 9 B 168 THR ARG LEU GLY VAL ASN SER VAL ALA ILE PRO LEU LEU SEQRES 10 B 168 SER THR GLY VAL TYR SER GLY GLY LYS ASP ARG LEU THR SEQRES 11 B 168 GLN SER LEU ASN HIS LEU PHE THR ALA MET ASP SER THR SEQRES 12 B 168 ASP ALA ASP VAL VAL ILE TYR CYS ARG ASP LYS GLU TRP SEQRES 13 B 168 GLU LYS LYS ILE SER GLU ALA ILE GLN MET ARG THR SEQRES 1 C 168 MET LYS HIS HIS HIS HIS HIS HIS ALA PRO SER TYR ARG SEQRES 2 C 168 VAL LYS ARG MET ASP ILE ALA LYS ASN ASP GLU GLU CYS SEQRES 3 C 168 VAL VAL ASN ALA ALA ASN PRO ARG GLY LEU PRO GLY ASP SEQRES 4 C 168 GLY VAL CYS LYS ALA VAL TYR LYS LYS TRP PRO GLU SER SEQRES 5 C 168 PHE LYS ASN SER ALA THR PRO VAL GLY THR ALA LYS THR SEQRES 6 C 168 VAL MET CYS GLY THR TYR PRO VAL ILE HIS ALA VAL GLY SEQRES 7 C 168 PRO ASN PHE SER ASN TYR SER GLU SER GLU GLY ASP ARG SEQRES 8 C 168 GLU LEU ALA ALA ALA TYR ARG GLU VAL ALA LYS GLU VAL SEQRES 9 C 168 THR ARG LEU GLY VAL ASN SER VAL ALA ILE PRO LEU LEU SEQRES 10 C 168 SER THR GLY VAL TYR SER GLY GLY LYS ASP ARG LEU THR SEQRES 11 C 168 GLN SER LEU ASN HIS LEU PHE THR ALA MET ASP SER THR SEQRES 12 C 168 ASP ALA ASP VAL VAL ILE TYR CYS ARG ASP LYS GLU TRP SEQRES 13 C 168 GLU LYS LYS ILE SER GLU ALA ILE GLN MET ARG THR SEQRES 1 D 168 MET LYS HIS HIS HIS HIS HIS HIS ALA PRO SER TYR ARG SEQRES 2 D 168 VAL LYS ARG MET ASP ILE ALA LYS ASN ASP GLU GLU CYS SEQRES 3 D 168 VAL VAL ASN ALA ALA ASN PRO ARG GLY LEU PRO GLY ASP SEQRES 4 D 168 GLY VAL CYS LYS ALA VAL TYR LYS LYS TRP PRO GLU SER SEQRES 5 D 168 PHE LYS ASN SER ALA THR PRO VAL GLY THR ALA LYS THR SEQRES 6 D 168 VAL MET CYS GLY THR TYR PRO VAL ILE HIS ALA VAL GLY SEQRES 7 D 168 PRO ASN PHE SER ASN TYR SER GLU SER GLU GLY ASP ARG SEQRES 8 D 168 GLU LEU ALA ALA ALA TYR ARG GLU VAL ALA LYS GLU VAL SEQRES 9 D 168 THR ARG LEU GLY VAL ASN SER VAL ALA ILE PRO LEU LEU SEQRES 10 D 168 SER THR GLY VAL TYR SER GLY GLY LYS ASP ARG LEU THR SEQRES 11 D 168 GLN SER LEU ASN HIS LEU PHE THR ALA MET ASP SER THR SEQRES 12 D 168 ASP ALA ASP VAL VAL ILE TYR CYS ARG ASP LYS GLU TRP SEQRES 13 D 168 GLU LYS LYS ILE SER GLU ALA ILE GLN MET ARG THR SEQRES 1 F 3 A A ATP SEQRES 1 G 3 A A ATP HET ATP F 3 31 HET ATP G 3 31 HET PEG B 201 7 HET PEG C 201 7 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 HOH *218(H2 O) HELIX 1 AA1 ASP A 12 ASN A 16 5 5 HELIX 2 AA2 ASP A 33 TRP A 43 1 11 HELIX 3 AA3 PRO A 44 LYS A 48 5 5 HELIX 4 AA4 SER A 79 GLY A 102 1 24 HELIX 5 AA5 ARG A 122 ASP A 135 1 14 HELIX 6 AA6 ASP A 147 THR A 162 1 16 HELIX 7 AA7 ASP B 12 ASN B 16 5 5 HELIX 8 AA8 ASP B 33 TRP B 43 1 11 HELIX 9 AA9 PRO B 44 LYS B 48 5 5 HELIX 10 AB1 SER B 79 GLY B 102 1 24 HELIX 11 AB2 ARG B 122 ASP B 135 1 14 HELIX 12 AB3 ASP B 147 THR B 162 1 16 HELIX 13 AB4 ASP C 12 ASN C 16 5 5 HELIX 14 AB5 GLY C 34 TRP C 43 1 10 HELIX 15 AB6 PRO C 44 LYS C 48 5 5 HELIX 16 AB7 SER C 79 GLY C 102 1 24 HELIX 17 AB8 ARG C 122 ASP C 135 1 14 HELIX 18 AB9 ASP C 147 ARG C 161 1 15 HELIX 19 AC1 ASP D 12 ASN D 16 5 5 HELIX 20 AC2 GLY D 34 TRP D 43 1 10 HELIX 21 AC3 PRO D 44 LYS D 48 5 5 HELIX 22 AC4 SER D 79 GLY D 102 1 24 HELIX 23 AC5 ARG D 122 ASP D 135 1 14 HELIX 24 AC6 ASP D 147 MET D 160 1 14 SHEET 1 AA1 3 TYR A 6 ARG A 10 0 SHEET 2 AA1 3 ASP A 140 CYS A 145 1 O ILE A 143 N ARG A 7 SHEET 3 AA1 3 SER A 105 PRO A 109 1 N ILE A 108 O VAL A 142 SHEET 1 AA2 3 VAL A 21 ALA A 24 0 SHEET 2 AA2 3 TYR A 65 ALA A 70 1 O ILE A 68 N VAL A 21 SHEET 3 AA2 3 ALA A 57 CYS A 62 -1 N LYS A 58 O HIS A 69 SHEET 1 AA3 3 TYR B 6 ARG B 10 0 SHEET 2 AA3 3 ASP B 140 CYS B 145 1 O ILE B 143 N ARG B 7 SHEET 3 AA3 3 SER B 105 PRO B 109 1 N ILE B 108 O VAL B 142 SHEET 1 AA4 3 VAL B 21 ALA B 24 0 SHEET 2 AA4 3 TYR B 65 ALA B 70 1 O ILE B 68 N VAL B 21 SHEET 3 AA4 3 ALA B 57 CYS B 62 -1 N CYS B 62 O TYR B 65 SHEET 1 AA5 3 TYR C 6 ARG C 10 0 SHEET 2 AA5 3 ASP C 140 CYS C 145 1 O ILE C 143 N LYS C 9 SHEET 3 AA5 3 SER C 105 ILE C 108 1 N ILE C 108 O VAL C 142 SHEET 1 AA6 3 VAL C 21 ALA C 24 0 SHEET 2 AA6 3 TYR C 65 ALA C 70 1 O ILE C 68 N VAL C 21 SHEET 3 AA6 3 ALA C 57 CYS C 62 -1 N CYS C 62 O TYR C 65 SHEET 1 AA7 3 SER D 5 ARG D 10 0 SHEET 2 AA7 3 ASP D 140 CYS D 145 1 O VAL D 141 N SER D 5 SHEET 3 AA7 3 SER D 105 ILE D 108 1 N ILE D 108 O VAL D 142 SHEET 1 AA8 3 VAL D 21 ALA D 24 0 SHEET 2 AA8 3 TYR D 65 ALA D 70 1 O ILE D 68 N VAL D 21 SHEET 3 AA8 3 ALA D 57 CYS D 62 -1 N LYS D 58 O HIS D 69 LINK P A F 2 O2' ATP F 3 1555 1555 1.66 LINK P A G 2 O2' ATP G 3 1555 1555 1.63 CISPEP 1 ALA D 3 PRO D 4 0 3.09 SITE 1 AC1 3 VAL B 35 GLY B 114 HOH B 349 SITE 1 AC2 9 ALA C 24 VAL C 35 LEU C 110 THR C 113 SITE 2 AC2 9 GLY C 114 TYR C 116 HOH C 326 HOH C 358 SITE 3 AC2 9 HOH C 360 CRYST1 87.371 87.371 84.662 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011445 0.006608 0.000000 0.00000 SCALE2 0.000000 0.013216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011812 0.00000