HEADER HYDROLASE/PROTEIN TRANSPORT 23-JUN-14 4TU3 TITLE CRYSTAL STRUCTURE OF YEAST SAC1/VPS74 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOINOSITIDE PHOSPHATASE SAC1; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: RECESSIVE SUPPRESSOR OF SECRETORY DEFECT; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 74; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SAC1, RSD1, YKL212W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: VPS74, YDR372C, D9481.15; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN COMPLEX, PHOSPHORIC MONOESTER HYDROLASES, KEYWDS 2 PHOSPHATIDYLINOSITOL PHOSPHATES, GOLGI APPARATUS, HYDROLASE-PROTEIN KEYWDS 3 TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAI,F.A.HORENKAMP,K.R.REINISCH REVDAT 3 27-SEP-23 4TU3 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 01-OCT-14 4TU3 1 JRNL REVDAT 1 27-AUG-14 4TU3 0 JRNL AUTH Y.CAI,Y.DENG,F.HORENKAMP,K.M.REINISCH,C.G.BURD JRNL TITL SAC1-VPS74 STRUCTURE REVEALS A MECHANISM TO TERMINATE JRNL TITL 2 PHOSPHOINOSITIDE SIGNALING IN THE GOLGI APPARATUS. JRNL REF J.CELL BIOL. V. 206 485 2014 JRNL REFN ESSN 1540-8140 JRNL PMID 25113029 JRNL DOI 10.1083/JCB.201404041 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9609 - 7.6405 0.91 1475 143 0.1281 0.1741 REMARK 3 2 7.6405 - 6.0830 0.91 1454 142 0.2022 0.2318 REMARK 3 3 6.0830 - 5.3194 0.91 1486 144 0.2268 0.2648 REMARK 3 4 5.3194 - 4.8355 0.91 1475 143 0.2256 0.2631 REMARK 3 5 4.8355 - 4.4903 0.91 1462 142 0.2221 0.2303 REMARK 3 6 4.4903 - 4.2264 0.91 1499 146 0.2550 0.2840 REMARK 3 7 4.2264 - 4.0153 0.91 1436 140 0.2838 0.2906 REMARK 3 8 4.0153 - 3.8409 0.91 1492 146 0.2972 0.3285 REMARK 3 9 3.8409 - 3.6934 0.91 1451 141 0.3153 0.3366 REMARK 3 10 3.6934 - 3.5662 0.91 1479 146 0.3230 0.3025 REMARK 3 11 3.5662 - 3.4549 0.91 1451 141 0.3440 0.3923 REMARK 3 12 3.4549 - 3.3562 0.91 1502 145 0.3616 0.3410 REMARK 3 13 3.3562 - 3.2680 0.91 1479 145 0.3647 0.3551 REMARK 3 14 3.2680 - 3.1884 0.88 1433 139 0.3721 0.3755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5285 REMARK 3 ANGLE : 0.453 7174 REMARK 3 CHIRALITY : 0.031 832 REMARK 3 PLANARITY : 0.001 923 REMARK 3 DIHEDRAL : 9.747 1893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000200584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22586 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.187 REMARK 200 RESOLUTION RANGE LOW (A) : 29.542 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2ZIH, 3LWT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM HEPES AT PH 7.0, 35% (V/V) MPD, REMARK 280 0.3M NDSB-195, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.66900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.99692 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.79633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 79.66900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.99692 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.79633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 79.66900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.99692 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.79633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.99384 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.59267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 91.99384 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.59267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 91.99384 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.59267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 GLY X 21 REMARK 465 LYS X 22 REMARK 465 GLY X 23 REMARK 465 THR X 24 REMARK 465 ALA X 212 REMARK 465 GLY X 213 REMARK 465 THR X 214 REMARK 465 ARG X 215 REMARK 465 TYR X 216 REMARK 465 PHE X 217 REMARK 465 ARG X 218 REMARK 465 ARG X 219 REMARK 465 TYR X 262 REMARK 465 TRP X 263 REMARK 465 ALA X 264 REMARK 465 GLU X 265 REMARK 465 ILE X 266 REMARK 465 ASN X 267 REMARK 465 ASN X 268 REMARK 465 LEU X 269 REMARK 465 LYS X 270 REMARK 465 TYR X 271 REMARK 465 LYS X 272 REMARK 465 PRO X 273 REMARK 465 ASN X 274 REMARK 465 LEU X 275 REMARK 465 VAL X 276 REMARK 465 LEU X 277 REMARK 465 GLY X 278 REMARK 465 ASN X 306 REMARK 465 GLN X 307 REMARK 465 LYS X 308 REMARK 465 GLY X 309 REMARK 465 HIS X 310 REMARK 465 GLU X 311 REMARK 465 LEU X 312 REMARK 465 PRO X 313 REMARK 465 VAL X 314 REMARK 465 LYS X 315 REMARK 465 GLU X 316 REMARK 465 GLY X 317 REMARK 465 TYR X 318 REMARK 465 GLU X 319 REMARK 465 SER X 320 REMARK 465 VAL X 321 REMARK 465 VAL X 322 REMARK 465 HIS X 323 REMARK 465 ALA X 324 REMARK 465 VAL X 450 REMARK 465 ALA X 451 REMARK 465 TYR X 452 REMARK 465 SER X 453 REMARK 465 GLY X 454 REMARK 465 THR X 455 REMARK 465 GLY X 456 REMARK 465 ALA X 457 REMARK 465 LEU X 458 REMARK 465 LYS X 459 REMARK 465 THR X 460 REMARK 465 ASP X 461 REMARK 465 PHE X 462 REMARK 465 THR X 463 REMARK 465 ARG X 464 REMARK 465 THR X 465 REMARK 465 GLY X 466 REMARK 465 LYS X 467 REMARK 465 ARG X 468 REMARK 465 THR X 469 REMARK 465 ARG X 470 REMARK 465 LEU X 471 REMARK 465 GLY X 472 REMARK 465 ALA X 473 REMARK 465 PHE X 474 REMARK 465 ASN X 475 REMARK 465 ASP X 476 REMARK 465 PHE X 477 REMARK 465 LEU X 478 REMARK 465 ASN X 479 REMARK 465 SER X 480 REMARK 465 ALA X 481 REMARK 465 SER X 482 REMARK 465 ARG X 483 REMARK 465 TYR X 484 REMARK 465 TYR X 485 REMARK 465 GLN X 486 REMARK 465 ASN X 487 REMARK 465 ASN X 488 REMARK 465 TRP X 489 REMARK 465 THR X 490 REMARK 465 ASP X 491 REMARK 465 GLY X 492 REMARK 465 PRO X 493 REMARK 465 ARG X 494 REMARK 465 GLN X 495 REMARK 465 ASP X 496 REMARK 465 SER X 497 REMARK 465 TYR X 498 REMARK 465 ASP X 499 REMARK 465 LEU X 500 REMARK 465 PHE X 501 REMARK 465 LEU X 502 REMARK 465 GLY X 503 REMARK 465 GLY X 504 REMARK 465 PHE X 505 REMARK 465 ARG X 506 REMARK 465 PRO X 507 REMARK 465 HIS X 508 REMARK 465 THR X 509 REMARK 465 ALA X 510 REMARK 465 SER X 511 REMARK 465 ILE X 512 REMARK 465 LYS X 513 REMARK 465 SER X 514 REMARK 465 PRO X 515 REMARK 465 PHE X 516 REMARK 465 PRO X 517 REMARK 465 ASP X 518 REMARK 465 ARG X 519 REMARK 465 ARG X 520 REMARK 465 PRO X 521 REMARK 465 VAL X 522 REMARK 465 TYR X 523 REMARK 465 ILE X 524 REMARK 465 GLN X 525 REMARK 465 LEU X 526 REMARK 465 ILE X 527 REMARK 465 PRO X 528 REMARK 465 MET X 529 REMARK 465 ILE X 530 REMARK 465 ILE X 531 REMARK 465 CYS X 532 REMARK 465 ALA X 533 REMARK 465 ALA X 534 REMARK 465 LEU X 535 REMARK 465 THR X 536 REMARK 465 VAL X 537 REMARK 465 LEU X 538 REMARK 465 GLY X 539 REMARK 465 ALA X 540 REMARK 465 THR X 541 REMARK 465 ILE X 542 REMARK 465 PHE X 543 REMARK 465 PHE X 544 REMARK 465 PRO X 545 REMARK 465 LYS X 546 REMARK 465 ASP X 547 REMARK 465 ARG X 548 REMARK 465 PHE X 549 REMARK 465 THR X 550 REMARK 465 SER X 551 REMARK 465 SER X 552 REMARK 465 LYS X 553 REMARK 465 ASN X 554 REMARK 465 LEU X 555 REMARK 465 LEU X 556 REMARK 465 TYR X 557 REMARK 465 PHE X 558 REMARK 465 ALA X 559 REMARK 465 GLY X 560 REMARK 465 ALA X 561 REMARK 465 SER X 562 REMARK 465 ILE X 563 REMARK 465 VAL X 564 REMARK 465 LEU X 565 REMARK 465 ALA X 566 REMARK 465 LEU X 567 REMARK 465 SER X 568 REMARK 465 THR X 569 REMARK 465 LYS X 570 REMARK 465 PHE X 571 REMARK 465 MET X 572 REMARK 465 PHE X 573 REMARK 465 LYS X 574 REMARK 465 ASN X 575 REMARK 465 GLY X 576 REMARK 465 ILE X 577 REMARK 465 GLN X 578 REMARK 465 PHE X 579 REMARK 465 VAL X 580 REMARK 465 ASN X 581 REMARK 465 TRP X 582 REMARK 465 PRO X 583 REMARK 465 LYS X 584 REMARK 465 LEU X 585 REMARK 465 VAL X 586 REMARK 465 ASP X 587 REMARK 465 VAL X 588 REMARK 465 GLY X 589 REMARK 465 PHE X 590 REMARK 465 LEU X 591 REMARK 465 VAL X 592 REMARK 465 VAL X 593 REMARK 465 HIS X 594 REMARK 465 GLN X 595 REMARK 465 THR X 596 REMARK 465 HIS X 597 REMARK 465 ASP X 598 REMARK 465 LYS X 599 REMARK 465 GLU X 600 REMARK 465 GLN X 601 REMARK 465 GLN X 602 REMARK 465 PHE X 603 REMARK 465 LYS X 604 REMARK 465 GLY X 605 REMARK 465 LEU X 606 REMARK 465 LYS X 607 REMARK 465 TYR X 608 REMARK 465 ALA X 609 REMARK 465 GLN X 610 REMARK 465 SER X 611 REMARK 465 PRO X 612 REMARK 465 LYS X 613 REMARK 465 PHE X 614 REMARK 465 SER X 615 REMARK 465 LYS X 616 REMARK 465 PRO X 617 REMARK 465 ASP X 618 REMARK 465 PRO X 619 REMARK 465 LEU X 620 REMARK 465 LYS X 621 REMARK 465 ARG X 622 REMARK 465 ASP X 623 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 VAL A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 ILE A 20 REMARK 465 HIS A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 ASN A 25 REMARK 465 ASN A 26 REMARK 465 THR A 27 REMARK 465 LYS A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 ILE A 32 REMARK 465 ALA A 33 REMARK 465 ASN A 34 REMARK 465 ILE A 35 REMARK 465 ALA A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 GLY A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 ASN A 43 REMARK 465 GLY A 44 REMARK 465 THR A 45 REMARK 465 ASN A 46 REMARK 465 LYS A 47 REMARK 465 LYS A 48 REMARK 465 ILE A 49 REMARK 465 ALA A 50 REMARK 465 TYR A 51 REMARK 465 ASP A 52 REMARK 465 PRO A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 SER A 56 REMARK 465 LYS A 57 REMARK 465 LEU A 58 REMARK 465 ARG A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 ILE A 62 REMARK 465 ASN A 63 REMARK 465 ASP A 80 REMARK 465 ARG A 81 REMARK 465 GLU A 82 REMARK 465 GLY A 83 REMARK 465 TYR A 84 REMARK 465 LEU A 85 REMARK 465 SER A 86 REMARK 465 PHE A 87 REMARK 465 MET A 198 REMARK 465 LYS A 199 REMARK 465 ASN A 200 REMARK 465 PHE A 201 REMARK 465 PHE A 202 REMARK 465 LEU A 203 REMARK 465 PHE A 204 REMARK 465 ASP A 205 REMARK 465 MET A 206 REMARK 465 ALA A 207 REMARK 465 THR A 208 REMARK 465 HIS A 209 REMARK 465 ASP A 342 REMARK 465 MET A 343 REMARK 465 LEU A 344 REMARK 465 LEU A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN X 49 CG CD OE1 NE2 REMARK 470 LYS X 54 CG CD CE NZ REMARK 470 MET X 59 CG SD CE REMARK 470 LYS X 65 CG CD CE NZ REMARK 470 LYS X 113 CG CD CE NZ REMARK 470 LYS X 188 CG CD CE NZ REMARK 470 LYS X 246 CG CD CE NZ REMARK 470 GLU X 279 CG CD OE1 OE2 REMARK 470 ASN X 280 CG OD1 ND2 REMARK 470 LYS X 286 CG CD CE NZ REMARK 470 GLN X 291 CG CD OE1 NE2 REMARK 470 LYS X 343 CG CD CE NZ REMARK 470 MET X 344 CG SD CE REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ASN A 309 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS X 65 -116.78 57.35 REMARK 500 SER X 147 -68.02 -139.55 REMARK 500 ASN X 158 34.78 -91.24 REMARK 500 ALA X 187 108.38 -165.85 REMARK 500 HIS X 338 17.79 58.28 REMARK 500 ASP X 394 -116.12 61.41 REMARK 500 PRO A 153 107.52 -59.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 4TU3 X 1 623 UNP P32368 SAC1_YEAST 1 623 DBREF 4TU3 A 1 345 UNP Q06385 VPS74_YEAST 1 345 SEQRES 1 X 623 MET THR GLY PRO ILE VAL TYR VAL GLN ASN ALA ASP GLY SEQRES 2 X 623 ILE PHE PHE LYS LEU ALA GLU GLY LYS GLY THR ASN ASP SEQRES 3 X 623 ALA VAL ILE HIS LEU ALA ASN GLN ASP GLN GLY VAL ARG SEQRES 4 X 623 VAL LEU GLY ALA GLU GLU PHE PRO VAL GLN GLY GLU VAL SEQRES 5 X 623 VAL LYS ILE ALA SER LEU MET GLY PHE ILE LYS LEU LYS SEQRES 6 X 623 LEU ASN ARG TYR ALA ILE ILE ALA ASN THR VAL GLU GLU SEQRES 7 X 623 THR GLY ARG PHE ASN GLY HIS VAL PHE TYR ARG VAL LEU SEQRES 8 X 623 GLN HIS SER ILE VAL SER THR LYS PHE ASN SER ARG ILE SEQRES 9 X 623 ASP SER GLU GLU ALA GLU TYR ILE LYS LEU LEU GLU LEU SEQRES 10 X 623 HIS LEU LYS ASN SER THR PHE TYR PHE SER TYR THR TYR SEQRES 11 X 623 ASP LEU THR ASN SER LEU GLN ARG ASN GLU LYS VAL GLY SEQRES 12 X 623 PRO ALA ALA SER TRP LYS THR ALA ASP GLU ARG PHE PHE SEQRES 13 X 623 TRP ASN HIS TYR LEU THR GLU ASP LEU ARG ASN PHE ALA SEQRES 14 X 623 HIS GLN ASP PRO ARG ILE ASP SER PHE ILE GLN PRO VAL SEQRES 15 X 623 ILE TYR GLY TYR ALA LYS THR VAL ASP ALA VAL LEU ASN SEQRES 16 X 623 ALA THR PRO ILE VAL LEU GLY LEU ILE THR ARG ARG SER SEQRES 17 X 623 ILE PHE ARG ALA GLY THR ARG TYR PHE ARG ARG GLY VAL SEQRES 18 X 623 ASP LYS ASP GLY ASN VAL GLY ASN PHE ASN GLU THR GLU SEQRES 19 X 623 GLN ILE LEU LEU ALA GLU ASN PRO GLU SER GLU LYS ILE SEQRES 20 X 623 HIS VAL PHE SER PHE LEU GLN THR ARG GLY SER VAL PRO SEQRES 21 X 623 ILE TYR TRP ALA GLU ILE ASN ASN LEU LYS TYR LYS PRO SEQRES 22 X 623 ASN LEU VAL LEU GLY GLU ASN SER LEU ASP ALA THR LYS SEQRES 23 X 623 LYS HIS PHE ASP GLN GLN LYS GLU LEU TYR GLY ASP ASN SEQRES 24 X 623 TYR LEU VAL ASN LEU VAL ASN GLN LYS GLY HIS GLU LEU SEQRES 25 X 623 PRO VAL LYS GLU GLY TYR GLU SER VAL VAL HIS ALA LEU SEQRES 26 X 623 ASN ASP PRO LYS ILE HIS TYR VAL TYR PHE ASP PHE HIS SEQRES 27 X 623 HIS GLU CYS ARG LYS MET GLN TRP HIS ARG VAL LYS LEU SEQRES 28 X 623 LEU ILE ASP HIS LEU GLU LYS LEU GLY LEU SER ASN GLU SEQRES 29 X 623 ASP PHE PHE HIS LYS VAL ILE ASP SER ASN GLY ASN THR SEQRES 30 X 623 VAL GLU ILE VAL ASN GLU GLN HIS SER VAL VAL ARG THR SEQRES 31 X 623 ASN CYS MET ASP CYS LEU ASP ARG THR ASN VAL VAL GLN SEQRES 32 X 623 SER VAL LEU ALA GLN TRP VAL LEU GLN LYS GLU PHE GLU SEQRES 33 X 623 SER ALA ASP VAL VAL ALA THR GLY SER THR TRP GLU ASP SEQRES 34 X 623 ASN ALA PRO LEU LEU THR SER TYR GLN ASN LEU TRP ALA SEQRES 35 X 623 ASP ASN ALA ASP ALA VAL SER VAL ALA TYR SER GLY THR SEQRES 36 X 623 GLY ALA LEU LYS THR ASP PHE THR ARG THR GLY LYS ARG SEQRES 37 X 623 THR ARG LEU GLY ALA PHE ASN ASP PHE LEU ASN SER ALA SEQRES 38 X 623 SER ARG TYR TYR GLN ASN ASN TRP THR ASP GLY PRO ARG SEQRES 39 X 623 GLN ASP SER TYR ASP LEU PHE LEU GLY GLY PHE ARG PRO SEQRES 40 X 623 HIS THR ALA SER ILE LYS SER PRO PHE PRO ASP ARG ARG SEQRES 41 X 623 PRO VAL TYR ILE GLN LEU ILE PRO MET ILE ILE CYS ALA SEQRES 42 X 623 ALA LEU THR VAL LEU GLY ALA THR ILE PHE PHE PRO LYS SEQRES 43 X 623 ASP ARG PHE THR SER SER LYS ASN LEU LEU TYR PHE ALA SEQRES 44 X 623 GLY ALA SER ILE VAL LEU ALA LEU SER THR LYS PHE MET SEQRES 45 X 623 PHE LYS ASN GLY ILE GLN PHE VAL ASN TRP PRO LYS LEU SEQRES 46 X 623 VAL ASP VAL GLY PHE LEU VAL VAL HIS GLN THR HIS ASP SEQRES 47 X 623 LYS GLU GLN GLN PHE LYS GLY LEU LYS TYR ALA GLN SER SEQRES 48 X 623 PRO LYS PHE SER LYS PRO ASP PRO LEU LYS ARG ASP SEQRES 1 A 345 MET SER THR LEU GLN ARG ARG ARG VAL ASN ARG ALA ASP SEQRES 2 A 345 SER GLY ASP THR SER SER ILE HIS SER SER ALA ASN ASN SEQRES 3 A 345 THR LYS GLY ASP LYS ILE ALA ASN ILE ALA VAL ASP GLY SEQRES 4 A 345 ASP ASP ASP ASN GLY THR ASN LYS LYS ILE ALA TYR ASP SEQRES 5 A 345 PRO GLU GLU SER LYS LEU ARG ASP ASN ILE ASN ILE PRO SEQRES 6 A 345 THR LEU THR LEU MET GLU GLU VAL LEU LEU MET GLY LEU SEQRES 7 A 345 ARG ASP ARG GLU GLY TYR LEU SER PHE TRP ASN ASP SER SEQRES 8 A 345 ILE SER TYR ALA LEU ARG GLY CYS ILE ILE ILE GLU LEU SEQRES 9 A 345 ALA LEU ARG GLY LYS ILE ARG ILE LEU ASP ASP SER ALA SEQRES 10 A 345 ARG LYS ARG PHE ASP LEU SER GLU ARG LEU ILE GLU VAL SEQRES 11 A 345 ILE ASP SER SER LYS THR GLY GLU VAL LEU LEU ASP GLU SEQRES 12 A 345 THR LEU GLN LEU MET LYS ASN ASP GLU PRO LEU SER ILE SEQRES 13 A 345 SER ASN TRP ILE ASP LEU LEU SER GLY GLU THR TRP ASN SEQRES 14 A 345 LEU LEU LYS ILE ASN TYR GLN LEU LYS GLN VAL ARG GLU SEQRES 15 A 345 ARG LEU ALA LYS GLY LEU VAL ASP LYS GLY VAL LEU ARG SEQRES 16 A 345 THR GLU MET LYS ASN PHE PHE LEU PHE ASP MET ALA THR SEQRES 17 A 345 HIS PRO ILE ALA ASP ALA SER CYS LYS GLU ALA ILE LYS SEQRES 18 A 345 ARG ARG VAL LEU SER VAL LEU VAL SER ARG ASN MET GLU SEQRES 19 A 345 LEU SER TYR ASN GLU TYR PHE PRO GLU THR THR SER PHE SEQRES 20 A 345 LYS ILE ILE ARG THR LEU ALA LEU ILE CYS GLY SER TYR SEQRES 21 A 345 GLY ALA ASN VAL LEU GLU ASN VAL LEU THR THR LEU GLU SEQRES 22 A 345 TYR GLU LYS ARG ASP LYS ALA ILE SER ARG ALA GLU GLU SEQRES 23 A 345 ILE MET ALA GLN PHE SER GLN TYR PRO PHE ASP LEU GLU SEQRES 24 A 345 LYS GLU THR GLU LEU GLY VAL SER VAL ASN LEU ASN LYS SEQRES 25 A 345 GLU VAL LYS GLU GLU ILE GLU ASN ASN PRO GLY HIS ASP SEQRES 26 A 345 LEU GLN LEU GLU VAL ILE ALA GLY VAL PHE GLU VAL PHE SEQRES 27 A 345 SER ARG MET ASP MET LEU LEU HELIX 1 AA1 ASP X 105 LYS X 120 1 16 HELIX 2 AA2 SER X 135 LYS X 141 1 7 HELIX 3 AA3 THR X 162 HIS X 170 1 9 HELIX 4 AA4 ASP X 172 ASP X 176 5 5 HELIX 5 AA5 SER X 281 TYR X 296 1 16 HELIX 6 AA6 CYS X 341 GLY X 360 1 20 HELIX 7 AA7 LEU X 396 ALA X 418 1 23 HELIX 8 AA8 THR X 426 ASP X 429 5 4 HELIX 9 AA9 ASN X 430 SER X 449 1 20 HELIX 10 AB1 THR A 68 LEU A 78 1 11 HELIX 11 AB2 ASN A 89 ARG A 107 1 19 HELIX 12 AB3 SER A 116 ARG A 120 5 5 HELIX 13 AB4 ASP A 122 ARG A 126 5 5 HELIX 14 AB5 GLU A 138 ASN A 150 1 13 HELIX 15 AB6 SER A 155 GLY A 165 1 11 HELIX 16 AB7 LYS A 172 GLN A 176 5 5 HELIX 17 AB8 GLN A 179 LYS A 191 1 13 HELIX 18 AB9 ASP A 213 VAL A 229 1 17 HELIX 19 AC1 PHE A 247 ALA A 262 1 16 HELIX 20 AC2 ASN A 263 LEU A 269 5 7 HELIX 21 AC3 GLU A 273 PHE A 291 1 19 HELIX 22 AC4 ASN A 309 GLU A 319 1 11 HELIX 23 AC5 HIS A 324 SER A 339 1 16 SHEET 1 AA1 5 VAL X 38 LEU X 41 0 SHEET 2 AA1 5 VAL X 28 ALA X 32 -1 N VAL X 28 O LEU X 41 SHEET 3 AA1 5 GLY X 13 LEU X 18 -1 N PHE X 16 O ILE X 29 SHEET 4 AA1 5 ILE X 5 GLN X 9 -1 N VAL X 6 O LYS X 17 SHEET 5 AA1 5 VAL X 52 ILE X 55 -1 O VAL X 53 N TYR X 7 SHEET 1 AA210 SER X 57 LEU X 64 0 SHEET 2 AA210 ASN X 67 PHE X 82 -1 O ALA X 73 N SER X 57 SHEET 3 AA210 HIS X 85 VAL X 96 -1 O PHE X 87 N GLY X 80 SHEET 4 AA210 PHE X 124 PHE X 126 -1 O PHE X 126 N TYR X 88 SHEET 5 AA210 ILE X 183 VAL X 193 -1 O ILE X 183 N TYR X 125 SHEET 6 AA210 PRO X 198 ARG X 207 -1 O ILE X 199 N ALA X 192 SHEET 7 AA210 ASN X 231 ASN X 241 -1 O GLU X 234 N ILE X 204 SHEET 8 AA210 LYS X 246 ARG X 256 -1 O HIS X 248 N ALA X 239 SHEET 9 AA210 PHE X 367 ILE X 371 -1 O LYS X 369 N VAL X 249 SHEET 10 AA210 THR X 377 ASN X 382 -1 O VAL X 378 N VAL X 370 SHEET 1 AA3 3 ILE X 330 PHE X 335 0 SHEET 2 AA3 3 ASP X 298 LEU X 304 1 N LEU X 301 O VAL X 333 SHEET 3 AA3 3 SER X 386 ASN X 391 1 O VAL X 387 N TYR X 300 SHEET 1 AA4 2 ILE A 110 ARG A 111 0 SHEET 2 AA4 2 GLU A 129 VAL A 130 -1 O GLU A 129 N ARG A 111 CISPEP 1 TYR A 294 PRO A 295 0 -1.10 CRYST1 159.338 159.338 143.389 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006276 0.003623 0.000000 0.00000 SCALE2 0.000000 0.007247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006974 0.00000