HEADER LIGASE 27-JUN-14 4TVR TITLE TANDEM TUDOR AND PHD DOMAINS OF UHRF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TANDEM TUDOR AND PHD DOMAINS, UNP RESIDUES 109-395; COMPND 5 SYNONYM: NP95/ICBP90-LIKE RING FINGER PROTEIN,NP95-LIKE RING FINGER COMPND 6 PROTEIN,NUCLEAR PROTEIN 97,NUCLEAR ZINC FINGER PROTEIN NP97,RING COMPND 7 FINGER PROTEIN 107,UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN- COMPND 8 CONTAINING PROTEIN 2,UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER COMPND 9 DOMAINS PROTEIN 2; COMPND 10 EC: 6.3.2.-; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF2, NIRF, RNF107; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM (SGC), TANDEM TUDOR, PHD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,A.DONG,Q.ZHANG,M.ONG,S.DUAN,Y.LI,C.BOUNTRA,J.WEIGELT, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,Y.TONG,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 27-SEP-23 4TVR 1 REMARK REVDAT 3 24-JAN-18 4TVR 1 AUTHOR JRNL REVDAT 2 22-NOV-17 4TVR 1 SOURCE REMARK REVDAT 1 24-JUN-15 4TVR 0 JRNL AUTH J.R.WALKER,A.DONG,Q.ZHANG,M.ONG,S.DUAN,Y.LI,C.BOUNTRA, JRNL AUTH 2 J.WEIGELT,A.M.EDWARDS,C.H.ARROWSMITH,Y.TONG, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL STRUCTURE OF THE TANDEM TUDOR AND PHD DOMAINS OF UHRF2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1794 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1645 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2433 ; 0.973 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3751 ; 0.676 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 4.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;31.506 ;22.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;13.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2049 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 429 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 903 ; 1.541 ; 5.545 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 902 ; 1.540 ; 5.542 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1127 ; 2.586 ; 8.296 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1128 ; 2.585 ; 8.300 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 891 ; 2.212 ; 5.517 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 892 ; 2.210 ; 5.520 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1306 ; 3.091 ; 8.245 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1887 ; 5.207 ;43.131 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1874 ; 5.211 ;43.064 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1957 -19.2573 -25.3267 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.1982 REMARK 3 T33: 0.1145 T12: -0.0015 REMARK 3 T13: 0.0095 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.1038 L22: 4.1656 REMARK 3 L33: 2.2689 L12: 0.9860 REMARK 3 L13: -0.3585 L23: 1.3936 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.1052 S13: 0.2608 REMARK 3 S21: 0.1959 S22: 0.2530 S23: 0.0263 REMARK 3 S31: 0.0254 S32: 0.1898 S33: -0.3226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 393 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3365 -23.6427 -14.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.9019 T22: 0.3794 REMARK 3 T33: 0.5379 T12: -0.1651 REMARK 3 T13: 0.0320 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 9.2763 L22: 3.1138 REMARK 3 L33: 4.1178 L12: -5.1912 REMARK 3 L13: -1.6482 L23: 0.3898 REMARK 3 S TENSOR REMARK 3 S11: -0.4416 S12: 0.0016 S13: 0.1383 REMARK 3 S21: 0.0062 S22: 0.2706 S23: -0.1246 REMARK 3 S31: -0.5118 S32: -0.9755 S33: 0.1710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3ASK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.2 M NACL, 0.1 M HEPES REMARK 280 PH 7.5, 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.02600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.64000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.03900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.64000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.01300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.64000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.64000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.03900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.64000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.64000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.01300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.02600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 108 REMARK 465 ASN A 109 REMARK 465 GLN A 110 REMARK 465 PRO A 111 REMARK 465 SER A 112 REMARK 465 SER A 163 REMARK 465 ASP A 164 REMARK 465 GLY A 165 REMARK 465 GLN A 166 REMARK 465 SER A 167 REMARK 465 ARG A 168 REMARK 465 GLY A 169 REMARK 465 LYS A 170 REMARK 465 THR A 171 REMARK 465 PRO A 172 REMARK 465 LEU A 173 REMARK 465 LYS A 174 REMARK 465 ASN A 175 REMARK 465 GLY A 176 REMARK 465 ASN A 177 REMARK 465 ILE A 178 REMARK 465 LYS A 179 REMARK 465 HIS A 180 REMARK 465 LYS A 181 REMARK 465 SER A 182 REMARK 465 LYS A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 LEU A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 VAL A 192 REMARK 465 PRO A 193 REMARK 465 SER A 194 REMARK 465 THR A 195 REMARK 465 SER A 196 REMARK 465 ASN A 197 REMARK 465 SER A 198 REMARK 465 ASP A 199 REMARK 465 CYS A 200 REMARK 465 VAL A 201 REMARK 465 ALA A 202 REMARK 465 ALA A 203 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 330 REMARK 465 PRO A 382 REMARK 465 ALA A 383 REMARK 465 GLU A 384 REMARK 465 GLU A 385 REMARK 465 TYR A 386 REMARK 465 THR A 394 REMARK 465 ASP A 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 ASP A 206 CG OD1 OD2 REMARK 470 LYS A 272 CE NZ REMARK 470 LYS A 278 CE NZ REMARK 470 LEU A 333 CG CD1 CD2 REMARK 470 ASP A 337 CG OD1 OD2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 MET A 358 CG SD CE REMARK 470 LEU A 360 CG CD1 CD2 REMARK 470 ASP A 363 CG OD1 OD2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 ILE A 371 CG1 CG2 CD1 REMARK 470 ASN A 375 CG OD1 ND2 REMARK 470 ASP A 379 CG OD1 OD2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 VAL A 381 CG1 CG2 REMARK 470 CYS A 392 SG REMARK 470 LYS A 393 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 333 -76.84 -73.23 REMARK 500 SER A 346 -155.05 -137.60 REMARK 500 GLU A 355 79.00 60.11 REMARK 500 MET A 358 51.28 -98.69 REMARK 500 GLN A 359 111.60 -165.53 REMARK 500 ASN A 366 67.60 70.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 331 SG REMARK 620 2 CYS A 334 SG 113.6 REMARK 620 3 CYS A 342 SG 117.7 97.0 REMARK 620 4 CYS A 345 SG 130.8 98.7 92.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 347 SG REMARK 620 2 CYS A 350 SG 99.7 REMARK 620 3 HIS A 370 ND1 98.0 104.8 REMARK 620 4 CYS A 373 SG 116.4 117.0 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 362 SG REMARK 620 2 CYS A 365 SG 108.5 REMARK 620 3 CYS A 389 SG 113.7 125.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OLN RELATED DB: PDB REMARK 900 3OLN IS THE STRUCTURE OF THE SRA DOMAIN OF UHRF2 REMARK 900 RELATED ID: 1Z6U RELATED DB: PDB REMARK 900 1Z6U IS THE STRUCTURE OF THE RING ZINC FINGER OF UHRF2 DBREF 4TVR A 109 395 UNP Q96PU4 UHRF2_HUMAN 109 395 SEQADV 4TVR GLY A 108 UNP Q96PU4 EXPRESSION TAG SEQADV 4TVR A UNP Q96PU4 ASN 167 DELETION SEQADV 4TVR A UNP Q96PU4 GLY 168 DELETION SEQADV 4TVR A UNP Q96PU4 SER 169 DELETION SEQADV 4TVR A UNP Q96PU4 SER 170 DELETION SEQADV 4TVR A UNP Q96PU4 CYS 171 DELETION SEQADV 4TVR A UNP Q96PU4 LYS 172 DELETION SEQADV 4TVR A UNP Q96PU4 ARG 173 DELETION SEQADV 4TVR A UNP Q96PU4 THR 174 DELETION SEQADV 4TVR ALA A 383 UNP Q96PU4 GLU 383 ENGINEERED MUTATION SEQRES 1 A 280 GLY ASN GLN PRO SER THR SER ALA ARG ALA ARG LEU ILE SEQRES 2 A 280 ASP PRO GLY PHE GLY ILE TYR LYS VAL ASN GLU LEU VAL SEQRES 3 A 280 ASP ALA ARG ASP VAL GLY LEU GLY ALA TRP PHE GLU ALA SEQRES 4 A 280 HIS ILE HIS SER VAL THR ARG ALA SER ASP GLY GLN SER SEQRES 5 A 280 ARG GLY LYS THR PRO LEU LYS ASN GLY ASN ILE LYS HIS SEQRES 6 A 280 LYS SER LYS GLU ASN THR ASN LYS LEU ASP SER VAL PRO SEQRES 7 A 280 SER THR SER ASN SER ASP CYS VAL ALA ALA ASP GLU ASP SEQRES 8 A 280 VAL ILE TYR HIS ILE GLN TYR ASP GLU TYR PRO GLU SER SEQRES 9 A 280 GLY THR LEU GLU MET ASN VAL LYS ASP LEU ARG PRO ARG SEQRES 10 A 280 ALA ARG THR ILE LEU LYS TRP ASN GLU LEU ASN VAL GLY SEQRES 11 A 280 ASP VAL VAL MET VAL ASN TYR ASN VAL GLU SER PRO GLY SEQRES 12 A 280 GLN ARG GLY PHE TRP PHE ASP ALA GLU ILE THR THR LEU SEQRES 13 A 280 LYS THR ILE SER ARG THR LYS LYS GLU LEU ARG VAL LYS SEQRES 14 A 280 ILE PHE LEU GLY GLY SER GLU GLY THR LEU ASN ASP CYS SEQRES 15 A 280 LYS ILE ILE SER VAL ASP GLU ILE PHE LYS ILE GLU ARG SEQRES 16 A 280 PRO GLY ALA HIS PRO LEU SER PHE ALA ASP GLY LYS PHE SEQRES 17 A 280 LEU ARG ARG ASN ASP PRO GLU CYS ASP LEU CYS GLY GLY SEQRES 18 A 280 ASP PRO GLU LYS LYS CYS HIS SER CYS SER CYS ARG VAL SEQRES 19 A 280 CYS GLY GLY LYS HIS GLU PRO ASN MET GLN LEU LEU CYS SEQRES 20 A 280 ASP GLU CYS ASN VAL ALA TYR HIS ILE TYR CYS LEU ASN SEQRES 21 A 280 PRO PRO LEU ASP LYS VAL PRO ALA GLU GLU TYR TRP TYR SEQRES 22 A 280 CYS PRO SER CYS LYS THR ASP HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 UNX 7(X) FORMUL 12 HOH *53(H2 O) HELIX 1 AA1 TYR A 216 GLY A 220 5 5 HELIX 2 AA2 ASN A 225 LYS A 227 5 3 HELIX 3 AA3 LYS A 238 LEU A 242 5 5 SHEET 1 AA1 5 LEU A 222 MET A 224 0 SHEET 2 AA1 5 VAL A 207 TYR A 213 -1 N ILE A 211 O LEU A 222 SHEET 3 AA1 5 TRP A 143 ARG A 153 -1 N THR A 152 O ILE A 208 SHEET 4 AA1 5 LEU A 132 ARG A 136 -1 N ALA A 135 O PHE A 144 SHEET 5 AA1 5 LEU A 229 PRO A 231 -1 O ARG A 230 N ASP A 134 SHEET 1 AA2 4 VAL A 247 TYR A 252 0 SHEET 2 AA2 4 PHE A 262 THR A 273 -1 O PHE A 264 N VAL A 250 SHEET 3 AA2 4 LYS A 279 ILE A 285 -1 O GLU A 280 N LYS A 272 SHEET 4 AA2 4 LEU A 294 LYS A 298 -1 O LEU A 294 N ILE A 285 SHEET 1 AA3 2 GLN A 359 LEU A 360 0 SHEET 2 AA3 2 TYR A 369 HIS A 370 -1 O TYR A 369 N LEU A 360 LINK SG CYS A 331 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 334 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 342 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 345 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 347 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 350 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 362 ZN ZN A 403 1555 1555 2.35 LINK SG CYS A 365 ZN ZN A 403 1555 1555 2.35 LINK ND1 HIS A 370 ZN ZN A 402 1555 1555 2.07 LINK SG CYS A 373 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 389 ZN ZN A 403 1555 1555 2.34 CISPEP 1 ASN A 375 PRO A 376 0 3.96 SITE 1 AC1 4 CYS A 331 CYS A 334 CYS A 342 CYS A 345 SITE 1 AC2 4 CYS A 347 CYS A 350 HIS A 370 CYS A 373 SITE 1 AC3 3 CYS A 362 CYS A 365 CYS A 389 CRYST1 71.280 71.280 120.052 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008330 0.00000