HEADER PLANT PROTEIN 01-JUL-14 4TWM TITLE CRYSTAL STRUCTURE OF DIOSCORIN FROM DIOSCOREA JAPONICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIOSCORIN 5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIOSCOREA JAPONICA; SOURCE 3 ORGANISM_COMMON: YAM; SOURCE 4 ORGANISM_TAXID: 4673; SOURCE 5 GENE: DIO5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STORAGE PROTEIN, CARBONIC ANHYDRASE ACTIVITY, DEHYDROASCORBATE KEYWDS 2 REDUCTASE ACTIVITY, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.XUE,T.MIYAKAWA,A.NAKAMURA,M.TANOKURA REVDAT 3 29-JAN-20 4TWM 1 REMARK REVDAT 2 05-AUG-15 4TWM 1 JRNL REVDAT 1 01-APR-15 4TWM 0 JRNL AUTH Y.L.XUE,T.MIYAKAWA,A.NAKAMURA,K.HATANO,Y.SAWANO,M.TANOKURA JRNL TITL YAM TUBER STORAGE PROTEIN REDUCES PLANT OXIDANTS USING THE JRNL TITL 2 COUPLED REACTIONS AS CARBONIC ANHYDRASE AND DEHYDROASCORBATE JRNL TITL 3 REDUCTASE JRNL REF MOL PLANT V. 8 1115 2015 JRNL REFN ESSN 1752-9867 JRNL PMID 25747844 JRNL DOI 10.1016/J.MOLP.2015.02.015 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.094 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3947 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5340 ; 1.838 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 7.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;35.405 ;24.170 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;19.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3120 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4TWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CAPS, LITHIUM SULFATE, AMMONIUM REMARK 280 SULFATE, PH 10, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.78000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.73500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.38500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.78000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.73500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.38500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 242 REMARK 465 LEU A 243 REMARK 465 GLY A 244 REMARK 465 VAL A 245 REMARK 465 ILE A 246 REMARK 465 VAL B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 LYS B 242 REMARK 465 LEU B 243 REMARK 465 GLY B 244 REMARK 465 VAL B 245 REMARK 465 ILE B 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 95 CG HIS A 95 CD2 0.064 REMARK 500 HIS A 102 CG HIS A 102 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 82 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 40 CG - CD - NE ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 2.52 -69.63 REMARK 500 ARG A 86 -7.08 57.35 REMARK 500 PRO A 99 -176.05 -66.91 REMARK 500 ASN A 152 -29.48 -141.20 REMARK 500 ASN A 217 2.64 -69.56 REMARK 500 LYS B 22 126.72 -175.70 REMARK 500 LYS B 92 -69.11 -104.76 REMARK 500 ASP B 121 -2.87 -59.13 REMARK 500 SER B 151 -76.10 -42.79 REMARK 500 PRO B 185 142.41 -37.04 REMARK 500 ASN B 229 79.64 35.05 REMARK 500 PHE B 230 -12.11 74.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 DBREF 4TWM A 1 246 UNP A7MAQ2 A7MAQ2_DIOJA 26 271 DBREF 4TWM B 1 246 UNP A7MAQ2 A7MAQ2_DIOJA 26 271 SEQADV 4TWM ASP A 9 UNP A7MAQ2 GLU 34 ENGINEERED MUTATION SEQADV 4TWM ASP B 9 UNP A7MAQ2 GLU 34 ENGINEERED MUTATION SEQRES 1 A 246 VAL GLU ASP GLU PHE SER TYR ILE ASP GLY ASN PRO ASN SEQRES 2 A 246 GLY PRO GLU ASN TRP GLY ASN LEU LYS PRO GLU TRP GLU SEQRES 3 A 246 THR CYS GLY LYS GLY MET GLU GLN SER PRO ILE GLN LEU SEQRES 4 A 246 ARG ASP ASN ARG VAL ILE PHE ASP GLN THR LEU GLY LYS SEQRES 5 A 246 LEU ARG ARG ASN TYR ARG ALA VAL ASP ALA ARG LEU ARG SEQRES 6 A 246 ASN SER GLY HIS ASP VAL LEU VAL ASP PHE LYS GLY ASN SEQRES 7 A 246 ALA GLY SER LEU SER ILE ASN ARG VAL GLU TYR GLN LEU SEQRES 8 A 246 LYS ARG ILE HIS PHE HIS SER PRO SER GLU HIS GLU MET SEQRES 9 A 246 ASN GLY GLU ARG PHE ASP LEU GLU ALA GLN LEU VAL HIS SEQRES 10 A 246 GLU SER GLN ASP GLN LYS ARG ALA VAL VAL SER ILE LEU SEQRES 11 A 246 PHE ARG PHE GLY ARG ALA ASP PRO PHE LEU SER ASP LEU SEQRES 12 A 246 GLU ASP PHE ILE LYS GLN PHE SER ASN SER GLN LYS ASN SEQRES 13 A 246 GLU ILE ASN ALA GLY VAL VAL ASP PRO ASN GLN LEU GLN SEQRES 14 A 246 ILE ASP ASP SER ALA TYR TYR ARG TYR MET GLY SER PHE SEQRES 15 A 246 THR ALA PRO PRO CYS THR GLU GLY ILE SER TRP THR VAL SEQRES 16 A 246 MET ARG LYS VAL ALA THR VAL SER PRO ARG GLN VAL LEU SEQRES 17 A 246 LEU LEU LYS GLN ALA VAL ASN GLU ASN ALA ILE ASN ASN SEQRES 18 A 246 ALA ARG PRO LEU GLN PRO THR ASN PHE ARG SER VAL PHE SEQRES 19 A 246 TYR PHE GLU GLN LEU LYS SER LYS LEU GLY VAL ILE SEQRES 1 B 246 VAL GLU ASP GLU PHE SER TYR ILE ASP GLY ASN PRO ASN SEQRES 2 B 246 GLY PRO GLU ASN TRP GLY ASN LEU LYS PRO GLU TRP GLU SEQRES 3 B 246 THR CYS GLY LYS GLY MET GLU GLN SER PRO ILE GLN LEU SEQRES 4 B 246 ARG ASP ASN ARG VAL ILE PHE ASP GLN THR LEU GLY LYS SEQRES 5 B 246 LEU ARG ARG ASN TYR ARG ALA VAL ASP ALA ARG LEU ARG SEQRES 6 B 246 ASN SER GLY HIS ASP VAL LEU VAL ASP PHE LYS GLY ASN SEQRES 7 B 246 ALA GLY SER LEU SER ILE ASN ARG VAL GLU TYR GLN LEU SEQRES 8 B 246 LYS ARG ILE HIS PHE HIS SER PRO SER GLU HIS GLU MET SEQRES 9 B 246 ASN GLY GLU ARG PHE ASP LEU GLU ALA GLN LEU VAL HIS SEQRES 10 B 246 GLU SER GLN ASP GLN LYS ARG ALA VAL VAL SER ILE LEU SEQRES 11 B 246 PHE ARG PHE GLY ARG ALA ASP PRO PHE LEU SER ASP LEU SEQRES 12 B 246 GLU ASP PHE ILE LYS GLN PHE SER ASN SER GLN LYS ASN SEQRES 13 B 246 GLU ILE ASN ALA GLY VAL VAL ASP PRO ASN GLN LEU GLN SEQRES 14 B 246 ILE ASP ASP SER ALA TYR TYR ARG TYR MET GLY SER PHE SEQRES 15 B 246 THR ALA PRO PRO CYS THR GLU GLY ILE SER TRP THR VAL SEQRES 16 B 246 MET ARG LYS VAL ALA THR VAL SER PRO ARG GLN VAL LEU SEQRES 17 B 246 LEU LEU LYS GLN ALA VAL ASN GLU ASN ALA ILE ASN ASN SEQRES 18 B 246 ALA ARG PRO LEU GLN PRO THR ASN PHE ARG SER VAL PHE SEQRES 19 B 246 TYR PHE GLU GLN LEU LYS SER LYS LEU GLY VAL ILE HET SO4 A 301 5 HET SO4 A 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 GLY A 14 GLU A 16 5 3 HELIX 2 AA2 ASN A 17 LYS A 22 1 6 HELIX 3 AA3 TRP A 25 GLY A 31 1 7 HELIX 4 AA4 ARG A 40 VAL A 44 5 5 HELIX 5 AA5 GLN A 48 GLY A 51 5 4 HELIX 6 AA6 ASP A 137 ASP A 142 1 6 HELIX 7 AA7 LEU A 143 PHE A 150 1 8 HELIX 8 AA8 ASP A 164 LEU A 168 5 5 HELIX 9 AA9 SER A 203 VAL A 214 1 12 HELIX 10 AB1 ASN A 215 ILE A 219 5 5 HELIX 11 AB2 GLY B 14 TRP B 18 5 5 HELIX 12 AB3 LYS B 22 GLU B 24 5 3 HELIX 13 AB4 TRP B 25 GLY B 31 1 7 HELIX 14 AB5 GLN B 48 GLY B 51 5 4 HELIX 15 AB6 ASP B 137 GLN B 149 1 13 HELIX 16 AB7 ASP B 164 LEU B 168 5 5 HELIX 17 AB8 SER B 203 ALA B 213 1 11 HELIX 18 AB9 ASN B 215 ILE B 219 5 5 SHEET 1 AA1 2 GLN A 38 LEU A 39 0 SHEET 2 AA1 2 GLU A 103 MET A 104 1 O GLU A 103 N LEU A 39 SHEET 1 AA210 ILE A 45 PHE A 46 0 SHEET 2 AA210 PHE A 234 GLU A 237 1 O TYR A 235 N ILE A 45 SHEET 3 AA210 ALA A 174 SER A 181 -1 N ARG A 177 O PHE A 234 SHEET 4 AA210 GLU A 189 MET A 196 -1 O ILE A 191 N GLY A 180 SHEET 5 AA210 ARG A 124 PHE A 133 1 N VAL A 126 O SER A 192 SHEET 6 AA210 LEU A 111 GLU A 118 -1 N LEU A 115 O VAL A 127 SHEET 7 AA210 VAL A 87 HIS A 97 -1 N ARG A 93 O VAL A 116 SHEET 8 AA210 VAL A 71 PHE A 75 -1 N VAL A 73 O ILE A 94 SHEET 9 AA210 VAL A 60 ASN A 66 -1 N ARG A 65 O LEU A 72 SHEET 10 AA210 GLU A 157 VAL A 163 -1 O VAL A 163 N VAL A 60 SHEET 1 AA3 6 ARG A 54 TYR A 57 0 SHEET 2 AA3 6 GLY A 80 ILE A 84 -1 O SER A 81 N ASN A 56 SHEET 3 AA3 6 VAL A 87 HIS A 97 -1 O TYR A 89 N LEU A 82 SHEET 4 AA3 6 LEU A 111 GLU A 118 -1 O VAL A 116 N ARG A 93 SHEET 5 AA3 6 ARG A 124 PHE A 133 -1 O VAL A 127 N LEU A 115 SHEET 6 AA3 6 ALA A 200 VAL A 202 1 O ALA A 200 N LEU A 130 SHEET 1 AA4 3 GLN B 38 LEU B 39 0 SHEET 2 AA4 3 GLU B 103 MET B 104 1 O GLU B 103 N LEU B 39 SHEET 3 AA4 3 GLU B 107 ARG B 108 -1 O GLU B 107 N MET B 104 SHEET 1 AA5 9 ILE B 45 PHE B 46 0 SHEET 2 AA5 9 PHE B 234 GLU B 237 1 O TYR B 235 N ILE B 45 SHEET 3 AA5 9 ALA B 174 GLY B 180 -1 N ARG B 177 O PHE B 234 SHEET 4 AA5 9 ILE B 191 VAL B 202 -1 O TRP B 193 N TYR B 178 SHEET 5 AA5 9 ARG B 124 PHE B 133 1 N VAL B 126 O SER B 192 SHEET 6 AA5 9 LEU B 111 GLU B 118 -1 N LEU B 115 O VAL B 127 SHEET 7 AA5 9 GLU B 88 HIS B 97 -1 N GLN B 90 O GLU B 118 SHEET 8 AA5 9 GLY B 80 SER B 83 -1 N LEU B 82 O TYR B 89 SHEET 9 AA5 9 ARG B 54 TYR B 57 -1 N ASN B 56 O SER B 81 SHEET 1 AA610 ILE B 45 PHE B 46 0 SHEET 2 AA610 PHE B 234 GLU B 237 1 O TYR B 235 N ILE B 45 SHEET 3 AA610 ALA B 174 GLY B 180 -1 N ARG B 177 O PHE B 234 SHEET 4 AA610 ILE B 191 VAL B 202 -1 O TRP B 193 N TYR B 178 SHEET 5 AA610 ARG B 124 PHE B 133 1 N VAL B 126 O SER B 192 SHEET 6 AA610 LEU B 111 GLU B 118 -1 N LEU B 115 O VAL B 127 SHEET 7 AA610 GLU B 88 HIS B 97 -1 N GLN B 90 O GLU B 118 SHEET 8 AA610 VAL B 71 LYS B 76 -1 N VAL B 73 O ILE B 94 SHEET 9 AA610 VAL B 60 ASN B 66 -1 N ASP B 61 O LYS B 76 SHEET 10 AA610 GLU B 157 VAL B 163 -1 O ALA B 160 N ALA B 62 SSBOND 1 CYS A 28 CYS A 187 1555 1555 2.14 SSBOND 2 CYS B 28 CYS B 187 1555 1555 2.04 CISPEP 1 SER A 35 PRO A 36 0 1.55 CISPEP 2 SER A 98 PRO A 99 0 -8.73 CISPEP 3 PRO A 185 PRO A 186 0 10.71 CISPEP 4 SER B 35 PRO B 36 0 -4.52 CISPEP 5 SER B 98 PRO B 99 0 -1.35 CISPEP 6 PRO B 185 PRO B 186 0 4.25 SITE 1 AC1 3 ARG A 40 ARG A 43 HOH A 443 SITE 1 AC2 2 GLU A 103 ARG A 108 CRYST1 83.470 156.770 83.560 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011967 0.00000