HEADER ISOMERASE 02-JUL-14 4TX9 TITLE CRYSTAL STRUCTURE OF HISAP FROM STREPTOMYCES SVICEUS WITH DEGRADED TITLE 2 PROFAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYL ISOMERASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO) COMPND 5 METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE,N-(5'- COMPND 6 PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE,PHOSPHORIBOSYLFORMIMINO-5- COMPND 7 AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SVICEUS ATCC 29083; SOURCE 3 ORGANISM_TAXID: 463191; SOURCE 4 GENE: PRIA, HISA, SSEG_10012; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS TIM-BARREL, ISOMERASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,E.A.VERDUZCO-CASTRO,M.ENDRES,F.BARONA-GOMEZ,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 4TX9 1 REMARK REVDAT 4 25-DEC-19 4TX9 1 REMARK REVDAT 3 08-NOV-17 4TX9 1 JRNL REVDAT 2 20-SEP-17 4TX9 1 SOURCE JRNL REMARK REVDAT 1 06-AUG-14 4TX9 0 JRNL AUTH E.A.VERDUZCO-CASTRO,K.MICHALSKA,M.ENDRES,A.L.JUAREZ-VAZQUEZ, JRNL AUTH 2 L.NODA-GARCIA,C.CHANG,C.S.HENRY,G.BABNIGG,A.JOACHIMIAK, JRNL AUTH 3 F.BARONA-GOMEZ JRNL TITL CO-OCCURRENCE OF ANALOGOUS ENZYMES DETERMINES EVOLUTION OF A JRNL TITL 2 NOVEL ( BETA ALPHA )8-ISOMERASE SUB-FAMILY AFTER JRNL TITL 3 NON-CONSERVED MUTATIONS IN FLEXIBLE LOOP. JRNL REF BIOCHEM. J. V. 473 1141 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 26929404 JRNL DOI 10.1042/BJ20151271 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1613) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8400 - 3.3200 0.99 5874 167 0.1425 0.1653 REMARK 3 2 3.3200 - 2.6400 1.00 5658 149 0.1563 0.1797 REMARK 3 3 2.6400 - 2.3000 1.00 5602 142 0.1443 0.1654 REMARK 3 4 2.3000 - 2.0900 1.00 5571 135 0.1364 0.1789 REMARK 3 5 2.0900 - 1.9400 1.00 5516 148 0.1490 0.1776 REMARK 3 6 1.9400 - 1.8300 1.00 5504 141 0.1545 0.2059 REMARK 3 7 1.8300 - 1.7400 1.00 5487 157 0.1726 0.2122 REMARK 3 8 1.7400 - 1.6600 1.00 5468 133 0.2051 0.2577 REMARK 3 9 1.6600 - 1.6000 0.99 5457 147 0.2294 0.2639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1930 REMARK 3 ANGLE : 1.621 2633 REMARK 3 CHIRALITY : 0.062 305 REMARK 3 PLANARITY : 0.008 345 REMARK 3 DIHEDRAL : 14.865 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8215 4.3702 31.7763 REMARK 3 T TENSOR REMARK 3 T11: 0.3179 T22: 0.2543 REMARK 3 T33: 0.2351 T12: -0.0701 REMARK 3 T13: -0.0708 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.4301 L22: 2.5858 REMARK 3 L33: 1.7786 L12: -0.3505 REMARK 3 L13: 0.2214 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: -0.5018 S13: -0.6532 REMARK 3 S21: 0.7067 S22: -0.1745 S23: 0.0078 REMARK 3 S31: 0.3178 S32: 0.2948 S33: -0.1131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4304 15.1498 14.4254 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1809 REMARK 3 T33: 0.0943 T12: -0.0019 REMARK 3 T13: -0.0191 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.5507 L22: 3.5040 REMARK 3 L33: 1.6338 L12: 0.4473 REMARK 3 L13: 0.3380 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.2291 S13: -0.1095 REMARK 3 S21: -0.1768 S22: 0.0020 S23: -0.0706 REMARK 3 S31: -0.0484 S32: 0.0775 S33: -0.0252 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7089 17.3972 11.2596 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.2855 REMARK 3 T33: 0.2217 T12: 0.0206 REMARK 3 T13: -0.0463 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 5.8867 L22: 3.4889 REMARK 3 L33: 4.1893 L12: 4.4703 REMARK 3 L13: -1.0930 L23: -1.4527 REMARK 3 S TENSOR REMARK 3 S11: -0.3035 S12: 0.5895 S13: 0.3573 REMARK 3 S21: -0.3787 S22: 0.4178 S23: 0.9132 REMARK 3 S31: -0.1603 S32: -0.6204 S33: -0.1170 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7949 19.1096 22.9515 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.2064 REMARK 3 T33: 0.1660 T12: -0.0148 REMARK 3 T13: -0.0175 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 2.1088 L22: 2.2628 REMARK 3 L33: 1.4264 L12: -0.5733 REMARK 3 L13: 0.2106 L23: 0.4586 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0441 S13: -0.0279 REMARK 3 S21: 0.0053 S22: -0.1320 S23: 0.1969 REMARK 3 S31: 0.0004 S32: -0.2286 S33: 0.1548 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2252 22.2902 31.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.2871 REMARK 3 T33: 0.1847 T12: -0.0073 REMARK 3 T13: 0.0048 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 5.3761 L22: 3.0984 REMARK 3 L33: 2.2446 L12: 0.6402 REMARK 3 L13: -0.0257 L23: -0.2476 REMARK 3 S TENSOR REMARK 3 S11: -0.1684 S12: -0.4756 S13: -0.0796 REMARK 3 S21: 0.1243 S22: -0.0299 S23: 0.4852 REMARK 3 S31: -0.0373 S32: -0.5535 S33: 0.1799 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7720 30.7573 27.9555 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.1398 REMARK 3 T33: 0.1828 T12: -0.0211 REMARK 3 T13: -0.0360 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 4.4629 L22: 4.6677 REMARK 3 L33: 6.4739 L12: 0.4573 REMARK 3 L13: 3.2919 L23: 0.7218 REMARK 3 S TENSOR REMARK 3 S11: -0.1783 S12: 0.1441 S13: 0.3625 REMARK 3 S21: -0.2041 S22: 0.0346 S23: -0.0339 REMARK 3 S31: -0.3433 S32: -0.0313 S33: 0.1472 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3311 26.8175 40.2765 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2636 REMARK 3 T33: 0.2093 T12: -0.0096 REMARK 3 T13: 0.0216 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 1.9279 L22: 7.9013 REMARK 3 L33: 5.7365 L12: 3.9028 REMARK 3 L13: -0.3621 L23: -0.7898 REMARK 3 S TENSOR REMARK 3 S11: 0.2472 S12: -0.6677 S13: 0.6208 REMARK 3 S21: 0.5237 S22: -0.3229 S23: 0.6463 REMARK 3 S31: -0.4142 S32: -0.5431 S33: 0.1373 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4264 11.6604 30.2264 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.1392 REMARK 3 T33: 0.1530 T12: -0.0144 REMARK 3 T13: -0.0406 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.4365 L22: 1.9084 REMARK 3 L33: 2.1744 L12: 0.2177 REMARK 3 L13: -0.0629 L23: 0.6394 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.0586 S13: -0.1553 REMARK 3 S21: 0.2109 S22: 0.0207 S23: -0.1691 REMARK 3 S31: 0.1879 S32: 0.0667 S33: -0.0623 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000201277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M IMIDAZOLE/HCL, 0.4 M REMARK 280 NA2HPO4/1.6 M K2HPO4, 10MG/ML PROTEIN, 2 MM PROFAR, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.64300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.27300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.27300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.46450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.27300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.27300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.82150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.27300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.27300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.46450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.27300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.27300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.82150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.64300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 710 O HOH A 721 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 67.86 -107.63 REMARK 500 ARG A 166 141.17 -170.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 244 GLN A 245 -128.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 650 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMZ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC111803 RELATED DB: TARGETTRACK DBREF 4TX9 A 1 245 UNP B5I4P8 B5I4P8_9ACTO 1 245 SEQADV 4TX9 SER A -2 UNP B5I4P8 EXPRESSION TAG SEQADV 4TX9 ASN A -1 UNP B5I4P8 EXPRESSION TAG SEQADV 4TX9 ALA A 0 UNP B5I4P8 EXPRESSION TAG SEQRES 1 A 248 SER ASN ALA MSE PRO SER LYS LEU SER ARG LEU GLU LEU SEQRES 2 A 248 LEU PRO ALA VAL ASP VAL ARG ASP GLY GLN ALA VAL ARG SEQRES 3 A 248 LEU VAL HIS GLY GLU SER GLY THR GLU THR SER TYR GLY SEQRES 4 A 248 SER PRO LEU GLU ALA ALA LEU SER TRP GLN ARG ALA GLY SEQRES 5 A 248 ALA GLU TRP LEU HIS LEU VAL ASP LEU ASP ALA ALA PHE SEQRES 6 A 248 GLY THR GLY ASP ASN ARG GLU LEU VAL ARG GLN VAL THR SEQRES 7 A 248 GLU ALA MSE ASP ILE LYS VAL GLU LEU SER GLY GLY ILE SEQRES 8 A 248 ARG ASP ASP ALA SER LEU ALA ALA ALA LEU ALA THR GLY SEQRES 9 A 248 CYS THR ARG VAL ASN LEU GLY THR ALA ALA LEU GLU SER SEQRES 10 A 248 PRO GLU TRP VAL ALA LYS VAL ILE ALA GLU HIS GLY ASP SEQRES 11 A 248 ARG ILE ALA VAL GLY LEU ASP VAL ARG GLY THR THR LEU SEQRES 12 A 248 LYS GLY ARG GLY TRP THR SER GLU GLY GLY ASP LEU TYR SEQRES 13 A 248 GLU ALA LEU GLU ARG LEU ASP LYS GLU GLY CYS ALA ARG SEQRES 14 A 248 TYR VAL VAL THR ASP ILE ALA LYS ASP GLY THR LEU GLN SEQRES 15 A 248 GLY PRO ASN LEU GLU LEU LEU ARG ASN VAL CYS ALA ALA SEQRES 16 A 248 THR ASP ARG PRO VAL VAL ALA SER GLY GLY VAL SER SER SEQRES 17 A 248 LEU ASP ASP LEU ARG ALA ILE ALA GLU LEU VAL PRO LEU SEQRES 18 A 248 GLY VAL GLU GLY SER ILE VAL GLY LYS ALA LEU TYR ALA SEQRES 19 A 248 LYS ALA PHE THR LEU GLU GLU ALA LEU GLU ALA VAL ALA SEQRES 20 A 248 GLN MODRES 4TX9 MSE A 1 MET MODIFIED RESIDUE MODRES 4TX9 MSE A 78 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 78 8 HET SO4 A 301 5 HET AMZ A 302 22 HET SO4 A 303 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM AMZ AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE HETSYN AMZ AICAR FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 AMZ C9 H15 N4 O8 P FORMUL 5 HOH *336(H2 O) HELIX 1 AA1 SER A 37 ALA A 48 1 12 HELIX 2 AA2 LEU A 58 GLY A 63 1 6 HELIX 3 AA3 ASN A 67 MSE A 78 1 12 HELIX 4 AA4 ASP A 90 THR A 100 1 11 HELIX 5 AA5 GLY A 108 SER A 114 1 7 HELIX 6 AA6 SER A 114 GLY A 126 1 13 HELIX 7 AA7 LEU A 152 GLY A 163 1 12 HELIX 8 AA8 ASN A 182 THR A 193 1 12 HELIX 9 AA9 SER A 205 GLU A 214 1 10 HELIX 10 AB1 LEU A 215 LEU A 218 5 4 HELIX 11 AB2 GLY A 226 ALA A 231 1 6 HELIX 12 AB3 THR A 235 GLN A 245 1 11 SHEET 1 AA1 9 THR A 33 SER A 34 0 SHEET 2 AA1 9 GLN A 20 ARG A 23 -1 N ARG A 23 O THR A 33 SHEET 3 AA1 9 GLU A 9 ARG A 17 -1 N ASP A 15 O VAL A 22 SHEET 4 AA1 9 TRP A 52 ASP A 57 1 O VAL A 56 N VAL A 16 SHEET 5 AA1 9 LYS A 81 SER A 85 1 O GLU A 83 N LEU A 55 SHEET 6 AA1 9 ARG A 104 LEU A 107 1 O ARG A 104 N LEU A 84 SHEET 7 AA1 9 ILE A 129 ARG A 136 1 O GLY A 132 N LEU A 107 SHEET 8 AA1 9 THR A 139 GLY A 142 -1 O THR A 139 N ARG A 136 SHEET 9 AA1 9 SER A 147 ASP A 151 -1 O GLY A 149 N LEU A 140 SHEET 1 AA2 9 THR A 33 SER A 34 0 SHEET 2 AA2 9 GLN A 20 ARG A 23 -1 N ARG A 23 O THR A 33 SHEET 3 AA2 9 GLU A 9 ARG A 17 -1 N ASP A 15 O VAL A 22 SHEET 4 AA2 9 VAL A 220 VAL A 225 1 O SER A 223 N LEU A 11 SHEET 5 AA2 9 VAL A 197 SER A 200 1 N VAL A 197 O GLU A 221 SHEET 6 AA2 9 TYR A 167 ASP A 171 1 N VAL A 169 O VAL A 198 SHEET 7 AA2 9 ILE A 129 ARG A 136 1 N VAL A 135 O THR A 170 SHEET 8 AA2 9 THR A 139 GLY A 142 -1 O THR A 139 N ARG A 136 SHEET 9 AA2 9 SER A 147 ASP A 151 -1 O GLY A 149 N LEU A 140 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N PRO A 2 1555 1555 1.35 LINK C ALA A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N ASP A 79 1555 1555 1.32 SITE 1 AC1 12 ARG A 23 ASP A 175 GLY A 176 GLY A 201 SITE 2 AC1 12 GLY A 202 GLY A 226 LYS A 227 HOH A 510 SITE 3 AC1 12 HOH A 521 HOH A 528 HOH A 627 HOH A 674 SITE 1 AC2 19 GLY A 27 VAL A 56 LEU A 58 PHE A 62 SITE 2 AC2 19 SER A 85 GLY A 86 GLY A 87 ARG A 89 SITE 3 AC2 19 GLY A 108 THR A 109 ASP A 134 GLY A 144 SITE 4 AC2 19 TRP A 145 HOH A 502 HOH A 512 HOH A 518 SITE 5 AC2 19 HOH A 532 HOH A 554 HOH A 647 SITE 1 AC3 3 ASP A 194 ARG A 195 HOH A 566 CRYST1 72.546 72.546 143.286 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006979 0.00000