HEADER RNA BINDING PROTEIN 03-JUL-14 4TXD TITLE CRYSTAL STRUCTURE OF THERMOFILUM PENDENS CSC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSC2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOFILUM PENDENS; SOURCE 3 ORGANISM_TAXID: 2269; SOURCE 4 GENE: TPEN_1325; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RRM DOMAIN, CRISPR, PROKARYOTIC IMMUNE SYSTEM, CAS7, RNA BINDING, KEYWDS 2 TYPE I-D, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HRLE,E.CONTI REVDAT 4 16-OCT-19 4TXD 1 REMARK REVDAT 3 25-MAR-15 4TXD 1 JRNL REVDAT 2 11-FEB-15 4TXD 1 REMARK REVDAT 1 27-AUG-14 4TXD 0 JRNL AUTH A.HRLE,L.K.MAIER,K.SHARMA,J.EBERT,C.BASQUIN,H.URLAUB, JRNL AUTH 2 A.MARCHFELDER,E.CONTI JRNL TITL STRUCTURAL ANALYSES OF THE CRISPR PROTEIN CSC2 REVEAL THE JRNL TITL 2 RNA-BINDING INTERFACE OF THE TYPE I-D CAS7 FAMILY. JRNL REF RNA BIOL. V. 11 1072 2014 JRNL REFN ESSN 1555-8584 JRNL PMID 25483036 JRNL DOI 10.4161/RNA.29893 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1678) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 95534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 5.6458 0.99 3027 166 0.1602 0.1606 REMARK 3 2 5.6458 - 4.4824 0.98 2976 159 0.1363 0.1677 REMARK 3 3 4.4824 - 3.9161 1.00 3036 154 0.1221 0.1382 REMARK 3 4 3.9161 - 3.5582 1.00 3030 164 0.1473 0.1989 REMARK 3 5 3.5582 - 3.3033 1.00 3033 163 0.1537 0.1902 REMARK 3 6 3.3033 - 3.1086 1.00 3061 157 0.1664 0.2003 REMARK 3 7 3.1086 - 2.9529 1.00 3024 163 0.1708 0.1886 REMARK 3 8 2.9529 - 2.8244 1.00 3043 159 0.1843 0.1935 REMARK 3 9 2.8244 - 2.7157 1.00 3012 154 0.1779 0.2069 REMARK 3 10 2.7157 - 2.6220 1.00 3042 161 0.1833 0.2015 REMARK 3 11 2.6220 - 2.5400 1.00 3047 159 0.1928 0.2510 REMARK 3 12 2.5400 - 2.4674 1.00 3013 161 0.1934 0.2831 REMARK 3 13 2.4674 - 2.4024 1.00 3017 160 0.2010 0.2114 REMARK 3 14 2.4024 - 2.3438 1.00 3077 164 0.2056 0.2405 REMARK 3 15 2.3438 - 2.2905 1.00 3013 159 0.2103 0.2494 REMARK 3 16 2.2905 - 2.2418 1.00 3001 157 0.2057 0.2913 REMARK 3 17 2.2418 - 2.1970 1.00 3070 156 0.2096 0.2286 REMARK 3 18 2.1970 - 2.1555 1.00 3070 154 0.2131 0.2823 REMARK 3 19 2.1555 - 2.1170 1.00 3061 153 0.2182 0.2281 REMARK 3 20 2.1170 - 2.0811 1.00 2979 156 0.2271 0.2819 REMARK 3 21 2.0811 - 2.0475 1.00 3095 164 0.2376 0.2746 REMARK 3 22 2.0475 - 2.0160 1.00 2973 153 0.2479 0.2870 REMARK 3 23 2.0160 - 1.9864 1.00 3073 159 0.2482 0.2734 REMARK 3 24 1.9864 - 1.9584 1.00 3009 157 0.2651 0.3093 REMARK 3 25 1.9584 - 1.9319 1.00 3053 160 0.2958 0.3300 REMARK 3 26 1.9319 - 1.9069 1.00 3040 159 0.2926 0.3359 REMARK 3 27 1.9069 - 1.8830 1.00 3015 161 0.2991 0.3052 REMARK 3 28 1.8830 - 1.8603 1.00 3059 168 0.3083 0.3180 REMARK 3 29 1.8603 - 1.8387 1.00 2964 160 0.3184 0.3515 REMARK 3 30 1.8387 - 1.8180 0.92 2850 151 0.3288 0.3715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2790 REMARK 3 ANGLE : 1.102 3782 REMARK 3 CHIRALITY : 0.043 422 REMARK 3 PLANARITY : 0.004 489 REMARK 3 DIHEDRAL : 15.150 1073 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.818 REMARK 200 RESOLUTION RANGE LOW (A) : 46.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KCL, 0.01 M MGCL2, 5% PEG 8000 REMARK 280 AND 17% GLYCEROL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.47550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.29550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.47550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.29550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 134 REMARK 465 PRO A 135 REMARK 465 LEU A 136 REMARK 465 ALA A 137 REMARK 465 GLU A 138 REMARK 465 PHE A 139 REMARK 465 GLY A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 ALA A 143 REMARK 465 THR A 144 REMARK 465 ASP A 145 REMARK 465 ILE A 146 REMARK 465 GLN A 354 REMARK 465 LYS A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 GLY A 358 REMARK 465 LYS A 359 REMARK 465 LYS A 360 REMARK 465 SER A 361 REMARK 465 ARG A 362 REMARK 465 SER A 363 REMARK 465 LYS A 364 REMARK 465 LYS A 365 REMARK 465 ALA A 366 REMARK 465 GLU A 367 REMARK 465 PRO A 368 REMARK 465 GLU A 369 REMARK 465 GLU A 370 REMARK 465 SER A 371 REMARK 465 GLU A 372 REMARK 465 GLU A 373 REMARK 465 GLU A 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 581 O HOH A 584 1.36 REMARK 500 NH2 ARG A 18 O HOH A 993 1.87 REMARK 500 O HOH A 884 O HOH A 982 1.97 REMARK 500 O HOH A 552 O HOH A 581 2.02 REMARK 500 O HOH A 969 O HOH A 972 2.03 REMARK 500 O HOH A 527 O HOH A 576 2.08 REMARK 500 O HOH A 589 O HOH A 605 2.12 REMARK 500 O HOH A 709 O HOH A 785 2.14 REMARK 500 O HOH A 754 O HOH A 937 2.14 REMARK 500 O HOH A 921 O HOH A 987 2.15 REMARK 500 OE1 GLU A 340 O HOH A 856 2.15 REMARK 500 O HOH A 727 O HOH A 987 2.15 REMARK 500 O HOH A 504 O HOH A 571 2.15 REMARK 500 O HOH A 569 O HOH A 795 2.16 REMARK 500 O HOH A 886 O HOH A 980 2.16 REMARK 500 O HOH A 557 O HOH A 568 2.17 REMARK 500 O HOH A 501 O HOH A 927 2.18 REMARK 500 O HOH A 810 O HOH A 914 2.18 REMARK 500 O HOH A 918 O HOH A 984 2.18 REMARK 500 O HOH A 751 O HOH A 893 2.19 REMARK 500 O HOH A 583 O HOH A 598 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 534 O HOH A 571 4578 1.97 REMARK 500 O HOH A 501 O HOH A 594 4478 2.12 REMARK 500 O HOH A 603 O HOH A 611 4478 2.14 REMARK 500 O HOH A 580 O HOH A 597 4578 2.18 REMARK 500 O HOH A 576 O HOH A 595 4577 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 50 C LEU A 51 N -0.165 REMARK 500 LEU A 50 C LEU A 51 N -0.162 REMARK 500 THR A 209 CA THR A 209 C 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 54.51 -92.23 REMARK 500 ASN A 47 -155.30 -109.61 REMARK 500 ASN A 47 -157.53 -98.10 REMARK 500 ARG A 250 -72.45 -140.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 259 16.13 REMARK 500 TYR A 259 16.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 7.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 ASP A 149 OD1 103.3 REMARK 620 3 CYS A 152 SG 117.5 111.6 REMARK 620 4 CYS A 155 SG 101.6 98.5 121.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N0L RELATED DB: PDB DBREF 4TXD A 1 374 UNP A1RZU2 A1RZU2_THEPD 1 374 SEQADV 4TXD HIS A -15 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A -14 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A -13 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A -12 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A -11 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A -10 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD SER A -9 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD SER A -8 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD GLY A -7 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD LEU A -6 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD VAL A -5 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD PRO A -4 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD ARG A -3 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD GLY A -2 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD SER A -1 UNP A1RZU2 EXPRESSION TAG SEQADV 4TXD HIS A 0 UNP A1RZU2 EXPRESSION TAG SEQRES 1 A 390 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 390 GLY SER HIS MET SER GLY GLU LYS ARG ASP VAL LEU ALA SEQRES 3 A 390 GLU LEU GLY LEU GLY ASP LEU ARG PRO TYR LEU ARG SER SEQRES 4 A 390 ILE GLY ASP LYS ASP ARG ILE PHE PRO LYS ALA HIS ARG SEQRES 5 A 390 ILE GLU VAL VAL PHE LEU VAL ARG ALA ALA ASN TYR LEU SEQRES 6 A 390 LEU LEU ARG THR GLU GLY ALA GLY THR ILE ASN MET THR SEQRES 7 A 390 THR LEU GLU TYR SER GLY GLY ALA MET GLU VAL PRO VAL SEQRES 8 A 390 ILE GLN PRO GLN LYS LEU MET ALA VAL THR ARG ARG GLN SEQRES 9 A 390 MET LEU GLN LEU LEU ARG GLU TYR ARG ASP SER LEU ASP SEQRES 10 A 390 GLU VAL SER LYS ARG TRP LEU VAL GLN GLU VAL ILE GLY SEQRES 11 A 390 LYS ALA LYS ASP LEU GLY PHE LYS LYS VAL SER GLU GLU SEQRES 12 A 390 TRP ASN CYS THR ILE GLN PRO PRO LEU ALA GLU PHE GLY SEQRES 13 A 390 GLU LYS ALA THR ASP ILE GLY MET ASP GLY PHE CYS PRO SEQRES 14 A 390 HIS CYS THR ILE PHE GLY ALA ALA LEU THR GLU GLN HIS SEQRES 15 A 390 ASN GLU LYS PHE GLY GLY LEU SER ILE GLY ILE LYS THR SEQRES 16 A 390 ARG VAL ARG PHE ASP PRO ALA PHE ALA THR GLN ARG ARG SEQRES 17 A 390 ILE THR PRO GLU THR HIS ASN LYS VAL THR GLU GLY HIS SEQRES 18 A 390 LEU SER MET THR GLY GLN ALA LEU PHE SER GLU VAL HIS SEQRES 19 A 390 VAL GLU PRO GLY THR VAL PHE ILE GLY ARG ALA GLU LEU SEQRES 20 A 390 VAL ASP LEU THR GLU PRO GLU LEU VAL ALA THR LEU TYR SEQRES 21 A 390 SER LEU ALA THR LEU ARG GLU LEU GLY GLY ARG SER GLY SEQRES 22 A 390 ILE TYR GLY THR VAL ARG VAL GLU ILE LEU GLY VAL LYS SEQRES 23 A 390 ALA GLY LYS TYR ALA SER THR THR ALA TYR ASP LEU ALA SEQRES 24 A 390 ALA GLU ASN ALA GLY LYS GLY TYR GLU GLU VAL LYS LYS SEQRES 25 A 390 ASN LEU LYS GLU ARG LEU GLU LYS LEU GLY PHE THR PRO SEQRES 26 A 390 VAL ASP ASN SER LYS LEU LEU ALA ALA VAL ASP HIS LYS SEQRES 27 A 390 ASP PRO ASN GLY LEU PHE LYS ASP LEU TRP ARG SER SER SEQRES 28 A 390 ILE ASP PHE ALA GLU LYS MET VAL LYS TRP VAL GLU GLU SEQRES 29 A 390 LEU LYS GLY GLY GLY GLN LYS GLY SER GLY LYS LYS SER SEQRES 30 A 390 ARG SER LYS LYS ALA GLU PRO GLU GLU SER GLU GLU GLU HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *493(H2 O) HELIX 1 AA1 ASP A 7 LEU A 12 1 6 HELIX 2 AA2 LEU A 14 LEU A 21 5 8 HELIX 3 AA3 GLN A 77 LEU A 100 1 24 HELIX 4 AA4 ASP A 101 VAL A 112 1 12 HELIX 5 AA5 VAL A 112 LEU A 119 1 8 HELIX 6 AA6 CYS A 152 GLY A 159 1 8 HELIX 7 AA7 ASN A 167 GLY A 171 5 5 HELIX 8 AA8 THR A 235 THR A 248 1 14 HELIX 9 AA9 THR A 278 ASN A 286 1 9 HELIX 10 AB1 GLY A 290 GLY A 306 1 17 HELIX 11 AB2 ASP A 311 VAL A 319 1 9 HELIX 12 AB3 GLY A 326 LYS A 350 1 25 SHEET 1 1 1 ARG A 36 ALA A 45 0 SHEET 1 2 1 LEU A 49 ARG A 52 0 SHEET 1 3 1 MET A 61 TYR A 66 0 SHEET 1 4 1 GLY A 69 ILE A 76 0 SHEET 1 5 1 ALA A 160 LEU A 162 0 SHEET 1 6 1 ILE A 175 ILE A 177 0 SHEET 1 7 1 VAL A 181 PHE A 183 0 SHEET 1 8 1 ALA A 186 ALA A 188 0 SHEET 1 9 1 VAL A 201 GLU A 203 0 SHEET 1 10 1 LEU A 206 MET A 208 0 SHEET 1 11 1 GLU A 216 VAL A 219 0 SHEET 1 12 1 VAL A 224 LEU A 231 0 SHEET 1 13 1 GLU A 251 LEU A 252 0 SHEET 1 14 1 ILE A 258 GLY A 272 0 SHEET 1 15 1 THR A 308 PRO A 309 0 LINK SG CYS A 130 ZN ZN A 401 1555 1555 2.22 LINK OD1 ASP A 149 ZN ZN A 401 1555 1555 2.19 LINK SG CYS A 152 ZN ZN A 401 1555 1555 2.20 LINK SG CYS A 155 ZN ZN A 401 1555 1555 2.39 SITE 1 AC1 5 CYS A 130 ASP A 149 CYS A 152 HIS A 154 SITE 2 AC1 5 CYS A 155 CRYST1 80.951 112.591 60.465 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016538 0.00000