HEADER PROTEIN BINDING 07-JUL-14 4TXV TITLE CRYSTAL STRUCTURE OF THE MIXED DISULFIDE INTERMEDIATE BETWEEN TITLE 2 THIOREDOXIN-LIKE TLPAS(C110S) AND SUBUNIT II OF CYTOCHROME C OXIDASE TITLE 3 COXBPD (C233S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 40-217; COMPND 5 SYNONYM: CYTOCHROME C BIOGENESIS PROTEIN TLPA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 2; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 123-264; COMPND 12 EC: 1.9.3.1; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110; SOURCE 5 GENE: TLPA, BLL1380; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS (STRAIN JCM 10833 SOURCE 11 / IAM 13628 / NBRC 14792 / USDA 110); SOURCE 12 ORGANISM_TAXID: 224911; SOURCE 13 STRAIN: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110; SOURCE 14 GENE: COXB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA-HIS6-COXBPDC233S KEYWDS THIOREDOXIN, MIXED DISULPHIDE, CYTOCHROME C OXIDASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.QUADE,H.K.ABICHT,H.HENNECKE,R.GLOCKSHUBER REVDAT 7 20-DEC-23 4TXV 1 REMARK REVDAT 6 13-JUN-18 4TXV 1 SOURCE DBREF SEQADV REVDAT 5 06-SEP-17 4TXV 1 REMARK ATOM REVDAT 4 10-DEC-14 4TXV 1 REVDAT 3 03-DEC-14 4TXV 1 JRNL REVDAT 2 15-OCT-14 4TXV 1 JRNL REVDAT 1 01-OCT-14 4TXV 0 JRNL AUTH H.K.ABICHT,M.A.SCHARER,N.QUADE,R.LEDERMANN,E.MOHORKO, JRNL AUTH 2 G.CAPITANI,H.HENNECKE,R.GLOCKSHUBER JRNL TITL HOW PERIPLASMIC THIOREDOXIN TLPA REDUCES BACTERIAL COPPER JRNL TITL 2 CHAPERONE SCOI AND CYTOCHROME OXIDASE SUBUNIT II (COXB) JRNL TITL 3 PRIOR TO METALLATION. JRNL REF J.BIOL.CHEM. V. 289 32431 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25274631 JRNL DOI 10.1074/JBC.M114.607127 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2304 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4934 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4824 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6689 ; 1.825 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11143 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 6.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;35.669 ;24.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 843 ;16.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;22.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5506 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2507 ; 3.146 ; 3.565 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2506 ; 3.145 ; 3.564 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3125 ; 4.317 ; 5.318 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4TXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.480 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIUES 1JFU AND 1M56 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 0.8M FORMIC REMARK 280 ACID/NAOH, 0.1 M NA-CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 THR A 40 REMARK 465 LYS A 216 REMARK 465 ALA A 217 REMARK 465 ALA A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 LEU A 221 REMARK 465 GLY B 121 REMARK 465 ALA B 122 REMARK 465 SER B 265 REMARK 465 GLY B 266 REMARK 465 GLY B 267 REMARK 465 THR B 268 REMARK 465 GLY B 269 REMARK 465 THR B 270 REMARK 465 TYR B 271 REMARK 465 ALA B 272 REMARK 465 SER B 273 REMARK 465 ALA B 274 REMARK 465 ALA B 275 REMARK 465 GLY B 276 REMARK 465 PRO B 277 REMARK 465 THR B 278 REMARK 465 GLN B 279 REMARK 465 ALA C 38 REMARK 465 PRO C 39 REMARK 465 ALA C 218 REMARK 465 ALA C 219 REMARK 465 ALA C 220 REMARK 465 LEU C 221 REMARK 465 GLY D 121 REMARK 465 ALA D 122 REMARK 465 PHE D 123 REMARK 465 LEU D 124 REMARK 465 GLU D 125 REMARK 465 ALA D 161 REMARK 465 GLN D 162 REMARK 465 ASP D 163 REMARK 465 LYS D 164 REMARK 465 GLN D 165 REMARK 465 PRO D 166 REMARK 465 ARG D 167 REMARK 465 GLY D 266 REMARK 465 GLY D 267 REMARK 465 THR D 268 REMARK 465 GLY D 269 REMARK 465 THR D 270 REMARK 465 TYR D 271 REMARK 465 ALA D 272 REMARK 465 SER D 273 REMARK 465 ALA D 274 REMARK 465 ALA D 275 REMARK 465 GLY D 276 REMARK 465 PRO D 277 REMARK 465 THR D 278 REMARK 465 GLN D 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN D 180 O HOH D 301 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 140 61.44 66.16 REMARK 500 PRO A 141 -19.12 -40.28 REMARK 500 TYR A 158 73.02 -154.42 REMARK 500 ASP B 191 -59.58 -124.74 REMARK 500 ASP B 236 79.74 66.95 REMARK 500 HIS B 237 -1.01 64.81 REMARK 500 ALA C 44 -8.75 -59.01 REMARK 500 ARG C 94 150.72 -47.40 REMARK 500 ASP C 140 74.16 -119.14 REMARK 500 ASP D 236 34.83 -82.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 214 GLY A 215 -148.17 REMARK 500 LYS B 235 ASP B 236 129.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 414 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH D 405 DISTANCE = 5.89 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TXO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MIXED DISULFIDE COMPLEX OF THIOREDOXIN- REMARK 900 LIKE TLPAS(C110S) AND COPPER CHAPERONE SCOIS(C74S) DBREF 4TXV A 38 221 UNP P43221 TLPA_BRADU 38 221 DBREF 4TXV B 123 279 UNP H7C6E5 H7C6E5_BRADU 123 279 DBREF 4TXV C 38 221 UNP P43221 TLPA_BRADU 38 221 DBREF 4TXV D 123 279 UNP H7C6E5 H7C6E5_BRADU 123 279 SEQADV 4TXV SER A 110 UNP P43221 CYS 110 ENGINEERED MUTATION SEQADV 4TXV GLY B 121 UNP H7C6E5 EXPRESSION TAG SEQADV 4TXV ALA B 122 UNP H7C6E5 EXPRESSION TAG SEQADV 4TXV SER B 233 UNP H7C6E5 CYS 233 ENGINEERED MUTATION SEQADV 4TXV SER C 110 UNP P43221 CYS 110 ENGINEERED MUTATION SEQADV 4TXV GLY D 121 UNP H7C6E5 EXPRESSION TAG SEQADV 4TXV ALA D 122 UNP H7C6E5 EXPRESSION TAG SEQADV 4TXV SER D 233 UNP H7C6E5 CYS 233 ENGINEERED MUTATION SEQRES 1 A 184 ALA PRO THR GLY ASP PRO ALA CYS ARG ALA ALA VAL ALA SEQRES 2 A 184 THR ALA GLN LYS ILE ALA PRO LEU ALA HIS GLY GLU VAL SEQRES 3 A 184 ALA ALA LEU THR MET ALA SER ALA PRO LEU LYS LEU PRO SEQRES 4 A 184 ASP LEU ALA PHE GLU ASP ALA ASP GLY LYS PRO LYS LYS SEQRES 5 A 184 LEU SER ASP PHE ARG GLY LYS THR LEU LEU VAL ASN LEU SEQRES 6 A 184 TRP ALA THR TRP CYS VAL PRO SER ARG LYS GLU MET PRO SEQRES 7 A 184 ALA LEU ASP GLU LEU GLN GLY LYS LEU SER GLY PRO ASN SEQRES 8 A 184 PHE GLU VAL VAL ALA ILE ASN ILE ASP THR ARG ASP PRO SEQRES 9 A 184 GLU LYS PRO LYS THR PHE LEU LYS GLU ALA ASN LEU THR SEQRES 10 A 184 ARG LEU GLY TYR PHE ASN ASP GLN LYS ALA LYS VAL PHE SEQRES 11 A 184 GLN ASP LEU LYS ALA ILE GLY ARG ALA LEU GLY MET PRO SEQRES 12 A 184 THR SER VAL LEU VAL ASP PRO GLN GLY CYS GLU ILE ALA SEQRES 13 A 184 THR ILE ALA GLY PRO ALA GLU TRP ALA SER GLU ASP ALA SEQRES 14 A 184 LEU LYS LEU ILE ARG ALA ALA THR GLY LYS ALA ALA ALA SEQRES 15 A 184 ALA LEU SEQRES 1 B 159 GLY ALA PHE LEU GLU LEU ASP VAL PRO LYS ALA ASP LEU SEQRES 2 B 159 THR ILE LYS ALA THR GLY LYS GLN TRP TYR TRP SER TYR SEQRES 3 B 159 ALA TYR PRO ASP ASN GLY LYS PHE GLU PHE ASP SER LEU SEQRES 4 B 159 MET ALA GLN ASP LYS GLN PRO ARG LEU LEU GLY VAL ASP SEQRES 5 B 159 ASN GLU MET VAL VAL PRO VAL ASN LYS VAL ILE ARG VAL SEQRES 6 B 159 GLN VAL THR GLY ALA ASP VAL ILE HIS ALA PHE ALA LEU SEQRES 7 B 159 PRO ALA PHE GLY VAL LYS ILE ASP ALA ILE PRO GLY ARG SEQRES 8 B 159 LEU ASN GLU THR TRP PHE LYS ALA ALA LYS THR GLY MET SEQRES 9 B 159 PHE TYR GLY GLN CYS SER GLU LEU SER GLY LYS ASP HIS SEQRES 10 B 159 ALA PHE MET PRO ILE ALA ILE ARG VAL VAL GLU ASP LYS SEQRES 11 B 159 GLU PHE ALA SER TRP VAL GLU THR ALA LYS LYS LYS PHE SEQRES 12 B 159 ALA SER GLY GLY THR GLY THR TYR ALA SER ALA ALA GLY SEQRES 13 B 159 PRO THR GLN SEQRES 1 C 184 ALA PRO THR GLY ASP PRO ALA CYS ARG ALA ALA VAL ALA SEQRES 2 C 184 THR ALA GLN LYS ILE ALA PRO LEU ALA HIS GLY GLU VAL SEQRES 3 C 184 ALA ALA LEU THR MET ALA SER ALA PRO LEU LYS LEU PRO SEQRES 4 C 184 ASP LEU ALA PHE GLU ASP ALA ASP GLY LYS PRO LYS LYS SEQRES 5 C 184 LEU SER ASP PHE ARG GLY LYS THR LEU LEU VAL ASN LEU SEQRES 6 C 184 TRP ALA THR TRP CYS VAL PRO SER ARG LYS GLU MET PRO SEQRES 7 C 184 ALA LEU ASP GLU LEU GLN GLY LYS LEU SER GLY PRO ASN SEQRES 8 C 184 PHE GLU VAL VAL ALA ILE ASN ILE ASP THR ARG ASP PRO SEQRES 9 C 184 GLU LYS PRO LYS THR PHE LEU LYS GLU ALA ASN LEU THR SEQRES 10 C 184 ARG LEU GLY TYR PHE ASN ASP GLN LYS ALA LYS VAL PHE SEQRES 11 C 184 GLN ASP LEU LYS ALA ILE GLY ARG ALA LEU GLY MET PRO SEQRES 12 C 184 THR SER VAL LEU VAL ASP PRO GLN GLY CYS GLU ILE ALA SEQRES 13 C 184 THR ILE ALA GLY PRO ALA GLU TRP ALA SER GLU ASP ALA SEQRES 14 C 184 LEU LYS LEU ILE ARG ALA ALA THR GLY LYS ALA ALA ALA SEQRES 15 C 184 ALA LEU SEQRES 1 D 159 GLY ALA PHE LEU GLU LEU ASP VAL PRO LYS ALA ASP LEU SEQRES 2 D 159 THR ILE LYS ALA THR GLY LYS GLN TRP TYR TRP SER TYR SEQRES 3 D 159 ALA TYR PRO ASP ASN GLY LYS PHE GLU PHE ASP SER LEU SEQRES 4 D 159 MET ALA GLN ASP LYS GLN PRO ARG LEU LEU GLY VAL ASP SEQRES 5 D 159 ASN GLU MET VAL VAL PRO VAL ASN LYS VAL ILE ARG VAL SEQRES 6 D 159 GLN VAL THR GLY ALA ASP VAL ILE HIS ALA PHE ALA LEU SEQRES 7 D 159 PRO ALA PHE GLY VAL LYS ILE ASP ALA ILE PRO GLY ARG SEQRES 8 D 159 LEU ASN GLU THR TRP PHE LYS ALA ALA LYS THR GLY MET SEQRES 9 D 159 PHE TYR GLY GLN CYS SER GLU LEU SER GLY LYS ASP HIS SEQRES 10 D 159 ALA PHE MET PRO ILE ALA ILE ARG VAL VAL GLU ASP LYS SEQRES 11 D 159 GLU PHE ALA SER TRP VAL GLU THR ALA LYS LYS LYS PHE SEQRES 12 D 159 ALA SER GLY GLY THR GLY THR TYR ALA SER ALA ALA GLY SEQRES 13 D 159 PRO THR GLN FORMUL 5 HOH *444(H2 O) HELIX 1 AA1 ASP A 42 ALA A 44 5 3 HELIX 2 AA2 CYS A 45 ALA A 56 1 12 HELIX 3 AA3 PRO A 57 ALA A 59 5 3 HELIX 4 AA4 HIS A 60 ALA A 64 5 5 HELIX 5 AA5 SER A 91 ARG A 94 5 4 HELIX 6 AA6 CYS A 107 GLU A 113 1 7 HELIX 7 AA7 GLU A 113 SER A 125 1 13 HELIX 8 AA8 GLU A 142 ALA A 151 1 10 HELIX 9 AA9 ALA A 164 ILE A 173 1 10 HELIX 10 AB1 SER A 203 GLY A 215 1 13 HELIX 11 AB2 PRO B 199 GLY B 202 5 4 HELIX 12 AB3 GLU B 248 PHE B 263 1 16 HELIX 13 AB4 ASP C 42 ALA C 44 5 3 HELIX 14 AB5 CYS C 45 ALA C 56 1 12 HELIX 15 AB6 PRO C 57 ALA C 59 5 3 HELIX 16 AB7 HIS C 60 ALA C 64 5 5 HELIX 17 AB8 SER C 91 ARG C 94 5 4 HELIX 18 AB9 CYS C 107 SER C 125 1 19 HELIX 19 AC1 GLU C 142 ASN C 152 1 11 HELIX 20 AC2 ALA C 164 ILE C 173 1 10 HELIX 21 AC3 SER C 203 GLY C 215 1 13 HELIX 22 AC4 PRO D 199 GLY D 202 5 4 HELIX 23 AC5 GLU D 248 PHE D 263 1 16 SHEET 1 AA1 6 THR A 67 MET A 68 0 SHEET 2 AA1 6 GLU A 191 ILE A 195 -1 O THR A 194 N THR A 67 SHEET 3 AA1 6 THR A 181 VAL A 185 -1 N LEU A 184 O ILE A 192 SHEET 4 AA1 6 THR A 97 TRP A 103 -1 N VAL A 100 O VAL A 183 SHEET 5 AA1 6 PHE A 129 ASN A 135 1 O ILE A 134 N ASN A 101 SHEET 6 AA1 6 PHE A 159 ASN A 160 1 O PHE A 159 N ASN A 135 SHEET 1 AA2 2 ALA A 79 GLU A 81 0 SHEET 2 AA2 2 PRO A 87 LYS A 89 -1 O LYS A 88 N PHE A 80 SHEET 1 AA3 5 GLU B 155 SER B 158 0 SHEET 2 AA3 5 TYR B 143 ALA B 147 -1 N TRP B 144 O SER B 158 SHEET 3 AA3 5 LEU B 133 LYS B 140 -1 N THR B 138 O SER B 145 SHEET 4 AA3 5 VAL B 182 GLY B 189 1 O ARG B 184 N LEU B 133 SHEET 5 AA3 5 ASN B 213 LYS B 218 -1 O PHE B 217 N ILE B 183 SHEET 1 AA4 3 MET B 175 PRO B 178 0 SHEET 2 AA4 3 ALA B 243 VAL B 247 1 O ALA B 243 N MET B 175 SHEET 3 AA4 3 GLY B 223 TYR B 226 -1 N GLY B 223 O VAL B 246 SHEET 1 AA5 2 HIS B 194 LEU B 198 0 SHEET 2 AA5 2 VAL B 203 ALA B 207 -1 O ILE B 205 N PHE B 196 SHEET 1 AA6 6 THR C 67 MET C 68 0 SHEET 2 AA6 6 GLU C 191 ILE C 195 -1 O THR C 194 N THR C 67 SHEET 3 AA6 6 THR C 181 VAL C 185 -1 N SER C 182 O ILE C 195 SHEET 4 AA6 6 THR C 97 TRP C 103 -1 N VAL C 100 O VAL C 183 SHEET 5 AA6 6 PHE C 129 ASN C 135 1 O ILE C 134 N ASN C 101 SHEET 6 AA6 6 PHE C 159 ASN C 160 1 O PHE C 159 N ASN C 135 SHEET 1 AA7 2 ALA C 79 GLU C 81 0 SHEET 2 AA7 2 PRO C 87 LYS C 89 -1 O LYS C 88 N PHE C 80 SHEET 1 AA8 2 GLY C 178 MET C 179 0 SHEET 2 AA8 2 CYS D 229 SER D 230 -1 O CYS D 229 N MET C 179 SHEET 1 AA9 5 GLU D 155 SER D 158 0 SHEET 2 AA9 5 TYR D 143 ALA D 147 -1 N TRP D 144 O SER D 158 SHEET 3 AA9 5 LEU D 133 LYS D 140 -1 N THR D 138 O SER D 145 SHEET 4 AA9 5 VAL D 182 GLY D 189 1 O GLN D 186 N ALA D 137 SHEET 5 AA9 5 ASN D 213 LYS D 218 -1 O PHE D 217 N ILE D 183 SHEET 1 AB1 3 MET D 175 PRO D 178 0 SHEET 2 AB1 3 ALA D 243 VAL D 247 1 O ALA D 243 N MET D 175 SHEET 3 AB1 3 GLY D 223 TYR D 226 -1 N GLY D 223 O VAL D 246 SHEET 1 AB2 2 HIS D 194 LEU D 198 0 SHEET 2 AB2 2 VAL D 203 ALA D 207 -1 O ILE D 205 N PHE D 196 SSBOND 1 CYS A 45 CYS A 190 1555 1555 2.11 SSBOND 2 CYS A 107 CYS B 229 1555 1555 2.95 SSBOND 3 CYS C 45 CYS C 190 1555 1555 2.03 SSBOND 4 CYS C 107 CYS D 229 1555 1555 2.94 CISPEP 1 MET A 179 PRO A 180 0 -7.74 CISPEP 2 GLN B 141 TRP B 142 0 -5.40 CISPEP 3 GLN B 165 PRO B 166 0 4.66 CISPEP 4 MET C 179 PRO C 180 0 -7.92 CISPEP 5 GLN D 141 TRP D 142 0 -5.14 CRYST1 74.830 81.640 109.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009143 0.00000