HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-JUL-14 4TYH TITLE TERNARY COMPLEX OF P38 AND MK2 WITH A P38 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE-ACTIVATED PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 51-400; COMPND 5 SYNONYM: MK2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 6-353; COMPND 12 SYNONYM: MAPK 14,CRK1,MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA,MAP COMPND 13 KINASE P38 ALPHA; COMPND 14 EC: 2.7.11.24; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPKAPK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: MAPK14, CRK1, CSBP1, CSBP2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P38, MK2, P38 INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.G.CUMMING,J.E.DEBRECZENI,F.EDFELDT,F.EVERTSSON,M.HARRISON, AUTHOR 2 G.HOLDGATE,M.JAMES,S.LAMONT,K.OLDHAM,J.E.SULLIVAN,S.WELLS REVDAT 2 27-DEC-23 4TYH 1 SOURCE JRNL REMARK REVDAT 1 22-JUL-15 4TYH 0 JRNL AUTH J.G.CUMMING JRNL TITL DISCOVERY OF SUBSTRATE SELECTIVE, ATP-COMPETITIVE P38 ALPHA JRNL TITL 2 MAP KINASE INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0090 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.18000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : -4.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.528 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.439 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5561 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7535 ; 1.292 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9266 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 6.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;37.863 ;24.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 993 ;18.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 839 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6076 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1083 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3372 ; 0.456 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1346 ; 0.049 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5461 ; 0.858 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2189 ; 0.903 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2073 ; 1.623 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 72.6682 46.4941 104.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0843 REMARK 3 T33: 0.0205 T12: 0.0307 REMARK 3 T13: -0.0072 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.4378 L22: 0.4136 REMARK 3 L33: 0.6060 L12: -0.0780 REMARK 3 L13: -0.3572 L23: 0.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.1052 S13: 0.0357 REMARK 3 S21: -0.0220 S22: -0.0357 S23: 0.0777 REMARK 3 S31: 0.0477 S32: -0.0584 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 353 REMARK 3 ORIGIN FOR THE GROUP (A): 94.4118 34.3783 99.8943 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: 0.0243 REMARK 3 T33: 0.0791 T12: 0.0182 REMARK 3 T13: -0.0128 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.6582 L22: 1.5206 REMARK 3 L33: 1.7696 L12: -0.1306 REMARK 3 L13: -0.6901 L23: -0.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0678 S13: -0.3144 REMARK 3 S21: -0.1099 S22: 0.0603 S23: 0.0576 REMARK 3 S31: 0.2373 S32: 0.1180 S33: -0.0242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18845 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.860 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.94 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 4K, 100MM NACIT, PH 5.6, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.93800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.86300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.86300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.46900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.86300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.86300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.40700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.86300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.86300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.46900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.86300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.86300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.40700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.93800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 269 REMARK 465 ALA A 270 REMARK 465 ILE A 271 REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 GLY A 274 REMARK 465 MET A 275 REMARK 465 LYS A 276 REMARK 465 THR A 277 REMARK 465 ARG A 278 REMARK 465 ILE A 279 REMARK 465 ARG B 173 REMARK 465 HIS B 174 REMARK 465 THR B 175 REMARK 465 ASP B 176 REMARK 465 ASP B 177 REMARK 465 GLU B 178 REMARK 465 MET B 179 REMARK 465 THR B 180 REMARK 465 LEU B 195 REMARK 465 ASN B 196 REMARK 465 TRP B 197 REMARK 465 MET B 198 REMARK 465 HIS B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 PHE B 327 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 184 OD1 ASP A 245 1.87 REMARK 500 O LYS A 239 OG SER A 243 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 144.68 -171.31 REMARK 500 ASP A 186 34.52 -152.41 REMARK 500 ASP A 207 109.24 55.29 REMARK 500 ASP A 207 110.22 54.10 REMARK 500 THR A 221 101.30 64.24 REMARK 500 ASP A 241 -99.56 -70.80 REMARK 500 PRO A 262 48.42 -86.12 REMARK 500 LYS A 307 125.64 -34.80 REMARK 500 ILE A 325 -68.62 -92.54 REMARK 500 THR A 334 127.08 -35.09 REMARK 500 ASP A 345 99.39 -160.04 REMARK 500 ALA B 34 -71.73 -102.43 REMARK 500 TYR B 35 62.93 -106.57 REMARK 500 LYS B 79 77.68 -119.12 REMARK 500 ASN B 100 -43.54 -131.03 REMARK 500 ARG B 149 -55.38 76.87 REMARK 500 ASP B 150 50.85 -106.30 REMARK 500 ASP B 161 31.81 -94.53 REMARK 500 ASP B 168 87.17 81.52 REMARK 500 ARG B 186 65.22 -153.78 REMARK 500 ILE B 193 50.45 -92.17 REMARK 500 THR B 226 -93.78 -87.24 REMARK 500 ASP B 227 -171.92 -69.22 REMARK 500 SER B 251 -70.69 -76.48 REMARK 500 PHE B 274 59.67 -93.30 REMARK 500 LEU B 289 55.59 -98.70 REMARK 500 ASP B 292 96.54 -61.22 REMARK 500 ASP B 316 46.35 -141.04 REMARK 500 SER B 326 -107.56 54.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 155 GLN A 156 147.27 REMARK 500 SER A 219 LEU A 220 -148.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 39G B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYK RELATED DB: PDB DBREF 4TYH A 51 400 UNP P49137 MAPK2_HUMAN 51 400 DBREF 4TYH B 6 353 UNP P47811 MK14_MOUSE 6 353 SEQRES 1 A 350 GLY LEU GLN ILE LYS LYS ASN ALA ILE ILE ASP ASP TYR SEQRES 2 A 350 LYS VAL THR SER GLN VAL LEU GLY LEU GLY ILE ASN GLY SEQRES 3 A 350 LYS VAL LEU GLN ILE PHE ASN LYS ARG THR GLN GLU LYS SEQRES 4 A 350 PHE ALA LEU LYS MET LEU GLN ASP CYS PRO LYS ALA ARG SEQRES 5 A 350 ARG GLU VAL GLU LEU HIS TRP ARG ALA SER GLN CYS PRO SEQRES 6 A 350 HIS ILE VAL ARG ILE VAL ASP VAL TYR GLU ASN LEU TYR SEQRES 7 A 350 ALA GLY ARG LYS CYS LEU LEU ILE VAL MET GLU CYS LEU SEQRES 8 A 350 ASP GLY GLY GLU LEU PHE SER ARG ILE GLN ASP ARG GLY SEQRES 9 A 350 ASP GLN ALA PHE THR GLU ARG GLU ALA SER GLU ILE MET SEQRES 10 A 350 LYS SER ILE GLY GLU ALA ILE GLN TYR LEU HIS SER ILE SEQRES 11 A 350 ASN ILE ALA HIS ARG ASP VAL LYS PRO GLU ASN LEU LEU SEQRES 12 A 350 TYR THR SER LYS ARG PRO ASN ALA ILE LEU LYS LEU THR SEQRES 13 A 350 ASP PHE GLY PHE ALA LYS GLU THR THR SER HIS ASN SER SEQRES 14 A 350 LEU THR THR PRO CYS TYR THR PRO TYR TYR VAL ALA PRO SEQRES 15 A 350 GLU VAL LEU GLY PRO GLU LYS TYR ASP LYS SER CYS ASP SEQRES 16 A 350 MET TRP SER LEU GLY VAL ILE MET TYR ILE LEU LEU CYS SEQRES 17 A 350 GLY TYR PRO PRO PHE TYR SER ASN HIS GLY LEU ALA ILE SEQRES 18 A 350 SER PRO GLY MET LYS THR ARG ILE ARG MET GLY GLN TYR SEQRES 19 A 350 GLU PHE PRO ASN PRO GLU TRP SER GLU VAL SER GLU GLU SEQRES 20 A 350 VAL LYS MET LEU ILE ARG ASN LEU LEU LYS THR GLU PRO SEQRES 21 A 350 THR GLN ARG MET THR ILE THR GLU PHE MET ASN HIS PRO SEQRES 22 A 350 TRP ILE MET GLN SER THR LYS VAL PRO GLN THR PRO LEU SEQRES 23 A 350 HIS THR SER ARG VAL LEU LYS GLU ASP LYS GLU ARG TRP SEQRES 24 A 350 GLU ASP VAL LYS GLU GLU MET THR SER ALA LEU ALA THR SEQRES 25 A 350 MET ARG VAL ASP TYR GLU GLN ILE LYS ILE LYS LYS ILE SEQRES 26 A 350 GLU ASP ALA SER ASN PRO LEU LEU LEU LYS ARG ARG LYS SEQRES 27 A 350 LYS ALA ARG ALA LEU GLU ALA ALA ALA LEU ALA HIS SEQRES 1 B 348 PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR ILE TRP SEQRES 2 B 348 GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO VAL GLY SEQRES 3 B 348 SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE ASP THR SEQRES 4 B 348 LYS THR GLY HIS ARG VAL ALA VAL LYS LYS LEU SER ARG SEQRES 5 B 348 PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR TYR ARG SEQRES 6 B 348 GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU ASN VAL SEQRES 7 B 348 ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SER LEU SEQRES 8 B 348 GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS LEU MET SEQRES 9 B 348 GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN LYS LEU SEQRES 10 B 348 THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN ILE LEU SEQRES 11 B 348 ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE ILE HIS SEQRES 12 B 348 ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN GLU ASP SEQRES 13 B 348 CYS GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA ARG HIS SEQRES 14 B 348 THR ASP ASP GLU MET THR GLY TYR VAL ALA THR ARG TRP SEQRES 15 B 348 TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET HIS TYR SEQRES 16 B 348 ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS ILE MET SEQRES 17 B 348 ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO GLY THR SEQRES 18 B 348 ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG LEU VAL SEQRES 19 B 348 GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SER SER SEQRES 20 B 348 GLU SER ALA ARG ASN TYR ILE GLN SER LEU ALA GLN MET SEQRES 21 B 348 PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY ALA ASN SEQRES 22 B 348 PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU VAL LEU SEQRES 23 B 348 ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA LEU ALA SEQRES 24 B 348 HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP ASP GLU SEQRES 25 B 348 PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SER ARG SEQRES 26 B 348 ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR TYR ASP SEQRES 27 B 348 GLU VAL ILE SER PHE VAL PRO PRO PRO LEU HET 39G B 401 30 HETNAM 39G N-[5-(DIMETHYLSULFAMOYL)-2-METHYLPHENYL]-1-PHENYL-5- HETNAM 2 39G PROPYL-1H-PYRAZOLE-4-CARBOXAMIDE FORMUL 3 39G C22 H26 N4 O3 S FORMUL 4 HOH *(H2 O) HELIX 1 AA1 ALA A 58 ASP A 61 5 4 HELIX 2 AA2 CYS A 98 SER A 112 1 15 HELIX 3 AA3 GLU A 145 ASP A 152 1 8 HELIX 4 AA4 GLU A 160 ILE A 180 1 21 HELIX 5 AA5 LYS A 188 GLU A 190 5 3 HELIX 6 AA6 GLY A 236 LYS A 239 5 4 HELIX 7 AA7 TYR A 240 GLY A 259 1 20 HELIX 8 AA8 SER A 295 LYS A 307 1 13 HELIX 9 AA9 THR A 315 HIS A 322 1 8 HELIX 10 AB1 HIS A 322 GLN A 327 1 6 HELIX 11 AB2 SER A 328 VAL A 331 5 4 HELIX 12 AB3 HIS A 337 GLU A 344 1 8 HELIX 13 AB4 ASP A 345 ARG A 364 1 20 HELIX 14 AB5 LYS A 374 ALA A 378 5 5 HELIX 15 AB6 ASN A 380 HIS A 400 1 21 HELIX 16 AB7 SER B 61 MET B 78 1 18 HELIX 17 AB8 LEU B 113 GLN B 120 1 8 HELIX 18 AB9 THR B 123 ALA B 144 1 22 HELIX 19 AC1 LYS B 152 SER B 154 5 3 HELIX 20 AC2 ALA B 190 MET B 194 5 5 HELIX 21 AC3 THR B 203 GLY B 219 1 17 HELIX 22 AC4 ASP B 227 GLY B 240 1 14 HELIX 23 AC5 GLY B 243 LYS B 248 1 6 HELIX 24 AC6 SER B 252 LEU B 262 1 11 HELIX 25 AC7 ASN B 269 PHE B 274 1 6 HELIX 26 AC8 ASN B 278 LEU B 289 1 12 HELIX 27 AC9 ASP B 292 ARG B 296 5 5 HELIX 28 AD1 THR B 298 HIS B 305 1 8 HELIX 29 AD2 ALA B 306 ALA B 309 5 4 HELIX 30 AD3 ASP B 313 GLU B 317 5 5 HELIX 31 AD4 LEU B 333 SER B 347 1 15 SHEET 1 AA1 5 TYR A 63 LEU A 72 0 SHEET 2 AA1 5 LYS A 77 ASN A 83 -1 O PHE A 82 N LYS A 64 SHEET 3 AA1 5 LYS A 89 GLN A 96 -1 O PHE A 90 N ILE A 81 SHEET 4 AA1 5 ARG A 131 MET A 138 -1 O MET A 138 N ALA A 91 SHEET 5 AA1 5 ILE A 120 TYR A 128 -1 N ASP A 122 O VAL A 137 SHEET 1 AA2 2 ILE A 182 ALA A 183 0 SHEET 2 AA2 2 LYS A 212 GLU A 213 -1 O LYS A 212 N ALA A 183 SHEET 1 AA3 2 LEU A 192 TYR A 194 0 SHEET 2 AA3 2 LEU A 203 LEU A 205 -1 O LYS A 204 N LEU A 193 SHEET 1 AA4 2 TYR A 264 SER A 265 0 SHEET 2 AA4 2 TYR B 182 VAL B 183 -1 O VAL B 183 N TYR A 264 SHEET 1 AA5 2 PHE B 8 LEU B 13 0 SHEET 2 AA5 2 THR B 16 PRO B 21 -1 O THR B 16 N LEU B 13 SHEET 1 AA6 5 TYR B 24 VAL B 30 0 SHEET 2 AA6 5 SER B 37 ASP B 43 -1 O ALA B 40 N SER B 28 SHEET 3 AA6 5 ARG B 49 LYS B 54 -1 O VAL B 52 N CYS B 39 SHEET 4 AA6 5 TYR B 103 HIS B 107 -1 O LEU B 104 N LYS B 53 SHEET 5 AA6 5 ASP B 88 PHE B 90 -1 N ASP B 88 O VAL B 105 SHEET 1 AA7 3 ALA B 111 ASP B 112 0 SHEET 2 AA7 3 LEU B 156 VAL B 158 -1 O VAL B 158 N ALA B 111 SHEET 3 AA7 3 LEU B 164 ILE B 166 -1 O LYS B 165 N ALA B 157 CISPEP 1 GLY A 154 ASP A 155 0 -3.00 CISPEP 2 ASN A 288 PRO A 289 0 11.21 SITE 1 AC1 11 GLN A 369 ALA B 51 LYS B 53 GLU B 71 SITE 2 AC1 11 LEU B 75 THR B 106 HIS B 107 MET B 109 SITE 3 AC1 11 GLY B 110 LEU B 167 ASP B 168 CRYST1 87.726 87.726 229.876 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004350 0.00000