HEADER TRANSFERASE 08-JUL-14 4TYJ
TITLE STRUCTURAL ANALYSIS OF THE HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 4
TITLE 2 KINASE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 447-753;
COMPND 5 SYNONYM: FGFR-4;
COMPND 6 EC: 2.7.10.1;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: FGFR4, JTK2, TKF;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HTB
KEYWDS FIBROBLAST GROWTH FACTOR RECEPTOR, KINASE, TRANSFERASE, DOVITINIB,
KEYWDS 2 PONATINB, PROTEROS BIOSTRUCTURES GMBH
EXPDTA X-RAY DIFFRACTION
AUTHOR E.LESCA,A.LAMMENS,R.HUBER,M.AUGUSTIN
REVDAT 3 01-MAY-24 4TYJ 1 COMPND HETNAM
REVDAT 2 10-DEC-14 4TYJ 1 JRNL
REVDAT 1 24-SEP-14 4TYJ 0
JRNL AUTH E.LESCA,A.LAMMENS,R.HUBER,M.AUGUSTIN
JRNL TITL STRUCTURAL ANALYSIS OF THE HUMAN FIBROBLAST GROWTH FACTOR
JRNL TITL 2 RECEPTOR 4 KINASE.
JRNL REF J.MOL.BIOL. V. 426 3744 2014
JRNL REFN ESSN 1089-8638
JRNL PMID 25219510
JRNL DOI 10.1016/J.JMB.2014.09.004
REMARK 2
REMARK 2 RESOLUTION. 2.45 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.03
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 14070
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.217
REMARK 3 R VALUE (WORKING SET) : 0.214
REMARK 3 FREE R VALUE : 0.247
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300
REMARK 3 FREE R VALUE TEST SET COUNT : 1101
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51
REMARK 3 REFLECTION IN BIN (WORKING SET) : 868
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.3410
REMARK 3 BIN FREE R VALUE SET COUNT : 77
REMARK 3 BIN FREE R VALUE : 0.4230
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2184
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 53
REMARK 3 SOLVENT ATOMS : 56
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.70
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.57000
REMARK 3 B22 (A**2) : 1.57000
REMARK 3 B33 (A**2) : -3.14000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.360
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.317
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2249 ; 0.007 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1571 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.227 ; 2.012
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3802 ; 0.987 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 5.253 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;32.391 ;23.295
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;11.832 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.536 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.057 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2446 ; 0.004 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 444 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 444 A 552
REMARK 3 ORIGIN FOR THE GROUP (A): 27.7140 -10.5210 18.9470
REMARK 3 T TENSOR
REMARK 3 T11: 0.1992 T22: 0.0679
REMARK 3 T33: 0.1588 T12: -0.0193
REMARK 3 T13: -0.0192 T23: 0.0355
REMARK 3 L TENSOR
REMARK 3 L11: 4.5222 L22: 3.1462
REMARK 3 L33: 4.6721 L12: 0.6397
REMARK 3 L13: 0.0792 L23: -0.0815
REMARK 3 S TENSOR
REMARK 3 S11: 0.0660 S12: -0.2873 S13: -0.4126
REMARK 3 S21: 0.4644 S22: -0.0890 S23: -0.1928
REMARK 3 S31: 0.4176 S32: 0.3651 S33: 0.0229
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 553 A 753
REMARK 3 ORIGIN FOR THE GROUP (A): 16.9570 -7.0060 -7.0550
REMARK 3 T TENSOR
REMARK 3 T11: 0.0440 T22: 0.0912
REMARK 3 T33: 0.1275 T12: 0.0128
REMARK 3 T13: -0.0293 T23: -0.0501
REMARK 3 L TENSOR
REMARK 3 L11: 3.8421 L22: 2.0681
REMARK 3 L33: 3.7969 L12: 0.2344
REMARK 3 L13: -1.2266 L23: -0.3201
REMARK 3 S TENSOR
REMARK 3 S11: 0.0041 S12: 0.5050 S13: -0.3547
REMARK 3 S21: -0.1313 S22: -0.0332 S23: 0.1399
REMARK 3 S31: 0.1913 S32: -0.3366 S33: 0.0291
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4TYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-14.
REMARK 100 THE DEPOSITION ID IS D_1000202514.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15173
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450
REMARK 200 RESOLUTION RANGE LOW (A) : 62.030
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 10.50
REMARK 200 R MERGE (I) : 0.09100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.1734
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 10.50
REMARK 200 R MERGE FOR SHELL (I) : 0.85000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: GENERATED USING SWISS MODEL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.65
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM DIHYDROGEN PHOSPHATE,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.01650
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.14050
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.14050
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.02475
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.14050
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.14050
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.00825
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.14050
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.14050
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.02475
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.14050
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.14050
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.00825
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.01650
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14570 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 443
REMARK 465 CYS A 477
REMARK 465 PHE A 478
REMARK 465 GLY A 569
REMARK 465 PRO A 570
REMARK 465 ASP A 571
REMARK 465 LEU A 572
REMARK 465 SER A 573
REMARK 465 PRO A 574
REMARK 465 ASP A 575
REMARK 465 GLY A 576
REMARK 465 PRO A 577
REMARK 465 ARG A 578
REMARK 465 SER A 579
REMARK 465 SER A 580
REMARK 465 GLU A 581
REMARK 465 GLY A 582
REMARK 465 PRO A 583
REMARK 465 GLY A 636
REMARK 465 VAL A 637
REMARK 465 HIS A 638
REMARK 465 HIS A 639
REMARK 465 ILE A 640
REMARK 465 ASP A 641
REMARK 465 TYR A 642
REMARK 465 TYR A 643
REMARK 465 LYS A 644
REMARK 465 LYS A 645
REMARK 465 THR A 646
REMARK 465 SER A 647
REMARK 465 ASN A 648
REMARK 465 GLY A 649
REMARK 465 ARG A 650
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 MET A 444 CG SD CE
REMARK 480 LEU A 452 CD1 CD2
REMARK 480 ARG A 493 CD NE CZ NH1 NH2
REMARK 480 ASP A 507 CG OD1 OD2
REMARK 480 ASN A 508 CG OD1 ND2
REMARK 480 LYS A 512 CE NZ
REMARK 480 ARG A 529 CZ NH1 NH2
REMARK 480 GLU A 560 CD OE1 OE2
REMARK 480 ARG A 635 NE CZ NH1 NH2
REMARK 480 ARG A 664 CZ NH1 NH2
REMARK 480 ILE A 693 CD1
REMARK 480 GLU A 697 CD OE1 OE2
REMARK 480 GLU A 717 CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 493 79.86 -112.93
REMARK 500 ASN A 508 31.72 -94.18
REMARK 500 GLU A 543 43.90 -104.48
REMARK 500 ARG A 611 -19.01 84.74
REMARK 500 ASP A 612 53.78 -145.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 0LI A 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 803
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 804
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4TYE RELATED DB: PDB
REMARK 900 FGFR4 - APO-1-STRUCTURE
REMARK 900 RELATED ID: 4TYG RELATED DB: PDB
REMARK 900 FGFR4 - APO-2-STRUCTURE
REMARK 900 RELATED ID: 4TYI RELATED DB: PDB
REMARK 900 FGFR4 - DOVITINIB-STRUCTURE
DBREF 4TYJ A 447 753 UNP P22455 FGFR4_HUMAN 447 753
SEQADV 4TYJ ALA A 443 UNP P22455 EXPRESSION TAG
SEQADV 4TYJ MET A 444 UNP P22455 EXPRESSION TAG
SEQADV 4TYJ GLY A 445 UNP P22455 EXPRESSION TAG
SEQADV 4TYJ SER A 446 UNP P22455 EXPRESSION TAG
SEQRES 1 A 311 ALA MET GLY SER ALA GLY LEU VAL SER LEU ASP LEU PRO
SEQRES 2 A 311 LEU ASP PRO LEU TRP GLU PHE PRO ARG ASP ARG LEU VAL
SEQRES 3 A 311 LEU GLY LYS PRO LEU GLY GLU GLY CYS PHE GLY GLN VAL
SEQRES 4 A 311 VAL ARG ALA GLU ALA PHE GLY MET ASP PRO ALA ARG PRO
SEQRES 5 A 311 ASP GLN ALA SER THR VAL ALA VAL LYS MET LEU LYS ASP
SEQRES 6 A 311 ASN ALA SER ASP LYS ASP LEU ALA ASP LEU VAL SER GLU
SEQRES 7 A 311 MET GLU VAL MET LYS LEU ILE GLY ARG HIS LYS ASN ILE
SEQRES 8 A 311 ILE ASN LEU LEU GLY VAL CYS THR GLN GLU GLY PRO LEU
SEQRES 9 A 311 TYR VAL ILE VAL GLU CYS ALA ALA LYS GLY ASN LEU ARG
SEQRES 10 A 311 GLU PHE LEU ARG ALA ARG ARG PRO PRO GLY PRO ASP LEU
SEQRES 11 A 311 SER PRO ASP GLY PRO ARG SER SER GLU GLY PRO LEU SER
SEQRES 12 A 311 PHE PRO VAL LEU VAL SER CYS ALA TYR GLN VAL ALA ARG
SEQRES 13 A 311 GLY MET GLN TYR LEU GLU SER ARG LYS CYS ILE HIS ARG
SEQRES 14 A 311 ASP LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN
SEQRES 15 A 311 VAL MET LYS ILE ALA ASP PHE GLY LEU ALA ARG GLY VAL
SEQRES 16 A 311 HIS HIS ILE ASP TYR TYR LYS LYS THR SER ASN GLY ARG
SEQRES 17 A 311 LEU PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP
SEQRES 18 A 311 ARG VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY
SEQRES 19 A 311 ILE LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO
SEQRES 20 A 311 TYR PRO GLY ILE PRO VAL GLU GLU LEU PHE SER LEU LEU
SEQRES 21 A 311 ARG GLU GLY HIS ARG MET ASP ARG PRO PRO HIS CYS PRO
SEQRES 22 A 311 PRO GLU LEU TYR GLY LEU MET ARG GLU CYS TRP HIS ALA
SEQRES 23 A 311 ALA PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU
SEQRES 24 A 311 ALA LEU ASP LYS VAL LEU LEU ALA VAL SER GLU GLU
HET 0LI A 801 39
HET EDO A 802 4
HET PO4 A 803 5
HET PO4 A 804 5
HETNAM 0LI 3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-
HETNAM 2 0LI [(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)
HETNAM 3 0LI PHENYL}BENZAM IDE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM PO4 PHOSPHATE ION
HETSYN 0LI PONATINIB
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 0LI C29 H27 F3 N6 O
FORMUL 3 EDO C2 H6 O2
FORMUL 4 PO4 2(O4 P 3-)
FORMUL 6 HOH *56(H2 O)
HELIX 1 AA1 SER A 446 ASP A 453 1 8
HELIX 2 AA2 PRO A 463 ASP A 465 5 3
HELIX 3 AA3 SER A 510 GLY A 528 1 19
HELIX 4 AA4 ASN A 557 ARG A 565 1 9
HELIX 5 AA5 SER A 585 ARG A 606 1 22
HELIX 6 AA6 ALA A 614 ARG A 616 5 3
HELIX 7 AA7 PRO A 652 MET A 656 5 5
HELIX 8 AA8 ALA A 657 ARG A 664 1 8
HELIX 9 AA9 THR A 667 THR A 684 1 18
HELIX 10 AB1 PRO A 694 ARG A 703 1 10
HELIX 11 AB2 PRO A 715 TRP A 726 1 12
HELIX 12 AB3 ALA A 729 ARG A 733 5 5
HELIX 13 AB4 THR A 735 GLU A 753 1 19
SHEET 1 AA1 5 LEU A 467 GLY A 474 0
SHEET 2 AA1 5 GLN A 480 PHE A 487 -1 O ARG A 483 N LYS A 471
SHEET 3 AA1 5 ALA A 497 MET A 504 -1 O SER A 498 N ALA A 486
SHEET 4 AA1 5 TYR A 547 GLU A 551 -1 O VAL A 550 N ALA A 501
SHEET 5 AA1 5 LEU A 536 CYS A 540 -1 N GLY A 538 O ILE A 549
SHEET 1 AA2 2 VAL A 618 VAL A 620 0
SHEET 2 AA2 2 MET A 626 ILE A 628 -1 O LYS A 627 N LEU A 619
SITE 1 AC1 17 ALA A 501 LYS A 503 GLU A 520 MET A 524
SITE 2 AC1 17 ILE A 527 ILE A 533 VAL A 550 GLU A 551
SITE 3 AC1 17 ALA A 553 CYS A 608 ILE A 609 HIS A 610
SITE 4 AC1 17 LEU A 619 ILE A 628 ALA A 629 ASP A 630
SITE 5 AC1 17 PHE A 631
SITE 1 AC2 5 LYS A 531 ASN A 535 GLU A 551 LYS A 627
SITE 2 AC2 5 HOH A 956
SITE 1 AC3 6 GLU A 461 PHE A 462 ARG A 464 CYS A 540
SITE 2 AC3 6 GLN A 542 GLU A 543
SITE 1 AC4 6 ARG A 707 ARG A 723 TRP A 726 HIS A 727
SITE 2 AC4 6 HOH A 923 HOH A 930
CRYST1 66.281 66.281 176.033 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015087 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015087 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005681 0.00000