HEADER HYDROLASE/HYDROLASE INHIBITOR 08-JUL-14 4TYL TITLE FRAGMENT-BASED SCREENING OF THE BROMODOMAIN OF ATAD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 981-1108; COMPND 5 SYNONYM: AAA NUCLEAR COREGULATOR CANCER-ASSOCIATED PROTEIN,ANCCA; COMPND 6 EC: 3.6.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATAD2, L16, PRO2000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD KEYWDS BROMODOMAIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.HARNER,B.A.CHAUDER,J.PHAN,S.W.FESIK REVDAT 5 27-DEC-23 4TYL 1 REMARK REVDAT 4 04-DEC-19 4TYL 1 REMARK REVDAT 3 06-SEP-17 4TYL 1 SOURCE JRNL REMARK REVDAT 2 03-DEC-14 4TYL 1 JRNL REVDAT 1 29-OCT-14 4TYL 0 JRNL AUTH M.J.HARNER,B.A.CHAUDER,J.PHAN,S.W.FESIK JRNL TITL FRAGMENT-BASED SCREENING OF THE BROMODOMAIN OF ATAD2. JRNL REF J.MED.CHEM. V. 57 9687 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25314628 JRNL DOI 10.1021/JM501035J REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1911 - 4.4554 0.99 1637 159 0.1668 0.2197 REMARK 3 2 4.4554 - 3.5372 1.00 1518 147 0.1233 0.1408 REMARK 3 3 3.5372 - 3.0903 1.00 1502 146 0.1507 0.1886 REMARK 3 4 3.0903 - 2.8079 1.00 1481 144 0.1741 0.1954 REMARK 3 5 2.8079 - 2.6067 1.00 1475 143 0.1697 0.2213 REMARK 3 6 2.6067 - 2.4530 1.00 1466 142 0.1723 0.2020 REMARK 3 7 2.4530 - 2.3302 1.00 1445 140 0.1673 0.2178 REMARK 3 8 2.3302 - 2.2288 1.00 1475 142 0.1578 0.2102 REMARK 3 9 2.2288 - 2.1430 1.00 1440 140 0.1622 0.2092 REMARK 3 10 2.1430 - 2.0690 1.00 1448 141 0.1634 0.1875 REMARK 3 11 2.0690 - 2.0043 1.00 1443 139 0.1731 0.1917 REMARK 3 12 2.0043 - 1.9470 1.00 1434 139 0.1907 0.2504 REMARK 3 13 1.9470 - 1.8958 1.00 1444 140 0.2000 0.2300 REMARK 3 14 1.8958 - 1.8500 0.99 1426 138 0.2387 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1125 REMARK 3 ANGLE : 1.494 1530 REMARK 3 CHIRALITY : 0.084 173 REMARK 3 PLANARITY : 0.008 198 REMARK 3 DIHEDRAL : 12.290 431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 979 THROUGH 1001 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6869 -24.9951 -6.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.1715 REMARK 3 T33: 0.1766 T12: -0.0277 REMARK 3 T13: 0.0128 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 4.2184 L22: 1.8631 REMARK 3 L33: 2.9055 L12: -0.2266 REMARK 3 L13: 0.2648 L23: -0.5915 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: -0.0523 S13: 0.2448 REMARK 3 S21: -0.0522 S22: 0.0600 S23: -0.2635 REMARK 3 S31: -0.1600 S32: 0.4158 S33: 0.1130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1002 THROUGH 1009 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3842 -26.4441 -0.6928 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.4317 REMARK 3 T33: 0.3204 T12: 0.0329 REMARK 3 T13: 0.0117 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 4.1984 L22: 1.3891 REMARK 3 L33: 2.6951 L12: 1.2912 REMARK 3 L13: 0.0480 L23: 0.2062 REMARK 3 S TENSOR REMARK 3 S11: 0.2228 S12: 0.3242 S13: 0.8253 REMARK 3 S21: -0.1134 S22: 0.2744 S23: 0.3001 REMARK 3 S31: -0.3339 S32: -1.1496 S33: -0.4109 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1010 THROUGH 1030 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9789 -19.6353 13.9725 REMARK 3 T TENSOR REMARK 3 T11: 0.4002 T22: 0.5042 REMARK 3 T33: 0.4548 T12: 0.0347 REMARK 3 T13: 0.0974 T23: -0.1337 REMARK 3 L TENSOR REMARK 3 L11: 2.3201 L22: 2.1759 REMARK 3 L33: 3.6733 L12: 0.2360 REMARK 3 L13: -0.6812 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: 0.4452 S12: -0.8137 S13: 0.9189 REMARK 3 S21: 0.3482 S22: -0.0736 S23: 0.1505 REMARK 3 S31: -0.9737 S32: -0.2243 S33: -0.3667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1031 THROUGH 1045 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9008 -21.0783 2.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.2223 REMARK 3 T33: 0.2421 T12: -0.0202 REMARK 3 T13: 0.0173 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 2.6307 L22: 2.4937 REMARK 3 L33: 2.2380 L12: -0.1751 REMARK 3 L13: -0.4681 L23: -0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.2538 S13: 0.2426 REMARK 3 S21: 0.1745 S22: 0.1157 S23: -0.2051 REMARK 3 S31: -0.4098 S32: 0.1998 S33: -0.1061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1046 THROUGH 1063 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1859 -30.0262 8.7498 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.3835 REMARK 3 T33: 0.2071 T12: -0.0084 REMARK 3 T13: -0.0194 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.7978 L22: 1.5244 REMARK 3 L33: 3.1554 L12: 0.6490 REMARK 3 L13: -2.7389 L23: -0.0992 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.9709 S13: -0.0769 REMARK 3 S21: 0.1003 S22: -0.1071 S23: -0.1942 REMARK 3 S31: 0.0105 S32: 0.4763 S33: 0.0657 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1064 THROUGH 1068 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1470 -34.3412 16.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.5406 REMARK 3 T33: 0.2826 T12: -0.0101 REMARK 3 T13: 0.0083 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.6178 L22: 2.9504 REMARK 3 L33: 0.3124 L12: 3.4840 REMARK 3 L13: -0.0525 L23: 0.2757 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.3699 S13: 0.1611 REMARK 3 S21: 0.4475 S22: 0.3483 S23: 0.5552 REMARK 3 S31: 0.0422 S32: 0.1614 S33: -0.2233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1069 THROUGH 1092 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1470 -34.9672 2.6708 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.2803 REMARK 3 T33: 0.2130 T12: -0.0175 REMARK 3 T13: -0.0065 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.0255 L22: 0.8303 REMARK 3 L33: 1.7847 L12: 0.0198 REMARK 3 L13: -2.3056 L23: -0.2224 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: -0.4047 S13: -0.1542 REMARK 3 S21: -0.0062 S22: 0.0240 S23: -0.0589 REMARK 3 S31: 0.2335 S32: -0.0358 S33: 0.1938 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1093 THROUGH 1108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9620 -33.4731 -0.8296 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.3906 REMARK 3 T33: 0.2642 T12: 0.0217 REMARK 3 T13: 0.0178 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 7.2129 L22: 3.6623 REMARK 3 L33: 6.9769 L12: -0.7742 REMARK 3 L13: 2.0315 L23: -0.3856 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -1.0322 S13: -0.1906 REMARK 3 S21: 0.4200 S22: 0.1290 S23: 0.0023 REMARK 3 S31: -0.1259 S32: 0.2114 S33: -0.0840 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 38.183 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.40 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 20.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 23.10 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 5.5, 2.5 M REMARK 280 (NH4)2SO4. LIGAND-FREE CRYSTALS GROWN AT 277K, THEN SOAKED WITH REMARK 280 LIGAND AT 291K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.67200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.83600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.75400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.91800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 114.59000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.67200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.83600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.91800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.75400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 114.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1395 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 980 CG SD CE REMARK 470 GLN A 981 CD OE1 NE2 REMARK 470 GLU A 983 CD OE1 OE2 REMARK 470 LYS A1004 CD CE NZ REMARK 470 LYS A1011 CE NZ REMARK 470 GLU A1017 CG CD OE1 OE2 REMARK 470 LYS A1047 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 1046 CA CB CG1 CG2 REMARK 480 ARG A 1067 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 1067 O HOH A 1301 1.16 REMARK 500 CZ ARG A 1067 O HOH A 1301 1.90 REMARK 500 O HOH A 1330 O HOH A 1377 1.97 REMARK 500 NH2 ARG A 1067 O HOH A 1302 2.01 REMARK 500 O HOH A 1319 O HOH A 1385 2.05 REMARK 500 O HOH A 1355 O HOH A 1374 2.06 REMARK 500 CL CL A 1204 O HOH A 1366 2.09 REMARK 500 CL CL A 1202 O HOH A 1352 2.15 REMARK 500 O HOH A 1492 O HOH A 1526 2.16 REMARK 500 OE1 GLU A 1095 O HOH A 1543 2.16 REMARK 500 CL CL A 1202 O HOH A 1365 2.19 REMARK 500 O HOH A 1332 O HOH A 1387 2.19 REMARK 500 O HOH A 1326 O HOH A 1360 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1361 O HOH A 1377 8545 2.02 REMARK 500 O HOH A 1340 O HOH A 1359 12544 2.05 REMARK 500 NE2 HIS A 1041 NH2 ARG A 1067 6554 2.12 REMARK 500 O HOH A 1341 O HOH A 1374 6554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1457 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1545 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1551 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 39O A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4TZ8 RELATED DB: PDB DBREF 4TYL A 981 1108 UNP Q6PL18 ATAD2_HUMAN 981 1108 SEQADV 4TYL SER A 979 UNP Q6PL18 EXPRESSION TAG SEQADV 4TYL MET A 980 UNP Q6PL18 EXPRESSION TAG SEQRES 1 A 130 SER MET GLN GLU GLU ASP THR PHE ARG GLU LEU ARG ILE SEQRES 2 A 130 PHE LEU ARG ASN VAL THR HIS ARG LEU ALA ILE ASP LYS SEQRES 3 A 130 ARG PHE ARG VAL PHE THR LYS PRO VAL ASP PRO ASP GLU SEQRES 4 A 130 VAL PRO ASP TYR VAL THR VAL ILE LYS GLN PRO MET ASP SEQRES 5 A 130 LEU SER SER VAL ILE SER LYS ILE ASP LEU HIS LYS TYR SEQRES 6 A 130 LEU THR VAL LYS ASP TYR LEU ARG ASP ILE ASP LEU ILE SEQRES 7 A 130 CYS SER ASN ALA LEU GLU TYR ASN PRO ASP ARG ASP PRO SEQRES 8 A 130 GLY ASP ARG LEU ILE ARG HIS ARG ALA CYS ALA LEU ARG SEQRES 9 A 130 ASP THR ALA TYR ALA ILE ILE LYS GLU GLU LEU ASP GLU SEQRES 10 A 130 ASP PHE GLU GLN LEU CYS GLU GLU ILE GLN GLU SER ARG HET SO4 A1201 5 HET CL A1202 1 HET 39O A1203 14 HET CL A1204 1 HET CL A1205 1 HET CL A1206 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM 39O 5-AMINO-1,3,6-TRIMETHYL-1,3-DIHYDRO-2H-BENZIMIDAZOL-2- HETNAM 2 39O ONE FORMUL 2 SO4 O4 S 2- FORMUL 3 CL 4(CL 1-) FORMUL 4 39O C10 H13 N3 O FORMUL 8 HOH *251(H2 O) HELIX 1 AA1 SER A 979 ILE A 1002 1 24 HELIX 2 AA2 ASP A 1003 THR A 1010 5 8 HELIX 3 AA3 ASP A 1020 ILE A 1025 1 6 HELIX 4 AA4 ASP A 1030 LEU A 1040 1 11 HELIX 5 AA5 THR A 1045 ASN A 1064 1 20 HELIX 6 AA6 ASP A 1068 LEU A 1093 1 26 HELIX 7 AA7 ASP A 1094 SER A 1107 1 14 SITE 1 AC1 6 ARG A 987 ARG A 990 ARG A 994 ARG A1067 SITE 2 AC1 6 ARG A1072 HOH A1302 SITE 1 AC2 3 ARG A1077 HOH A1352 HOH A1365 SITE 1 AC3 7 VAL A1008 VAL A1013 TYR A1063 ASN A1064 SITE 2 AC3 7 ILE A1074 HOH A1407 HOH A1459 SITE 1 AC4 1 HOH A1366 SITE 1 AC5 2 HOH A1387 HOH A1395 CRYST1 79.492 79.492 137.508 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012580 0.007263 0.000000 0.00000 SCALE2 0.000000 0.014526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007272 0.00000