HEADER HYDROLASE 09-JUL-14 4TYT TITLE CRYSTAL STRUCTURE OF BCII METALLO-BETA-LACTAMASE IN COMPLEX WITH TITLE 2 ML302F COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-257; COMPND 5 SYNONYM: BETA-LACTAMASE II,CEPHALOSPORINASE,PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: BLM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9A KEYWDS ANTIMICROBIAL RESISTANCE, METALLO BETA LACTAMASE, INHIBITOR, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BREM,S.S.VAN BERKEL,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 4 20-DEC-23 4TYT 1 ATOM REVDAT 3 13-SEP-17 4TYT 1 REMARK SITE ATOM REVDAT 2 03-DEC-14 4TYT 1 JRNL REVDAT 1 26-NOV-14 4TYT 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,W.AIK,A.M.RYDZIK,M.B.AVISON, JRNL AUTH 2 I.PETTINATI,K.D.UMLAND,A.KAWAMURA,J.SPENCER,T.D.CLARIDGE, JRNL AUTH 3 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL RHODANINE HYDROLYSIS LEADS TO POTENT THIOENOLATE MEDIATED JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITION. JRNL REF NAT.CHEM. V. 6 1084 2014 JRNL REFN ESSN 1755-4349 JRNL PMID 25411887 JRNL DOI 10.1038/NCHEM.2110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0578 - 4.3307 1.00 1380 144 0.1371 0.1610 REMARK 3 2 4.3307 - 3.4394 1.00 1354 144 0.1163 0.1852 REMARK 3 3 3.4394 - 3.0052 1.00 1346 148 0.1328 0.1990 REMARK 3 4 3.0052 - 2.7307 1.00 1334 143 0.1514 0.1850 REMARK 3 5 2.7307 - 2.5351 1.00 1344 137 0.1469 0.1937 REMARK 3 6 2.5351 - 2.3857 1.00 1319 140 0.1389 0.1864 REMARK 3 7 2.3857 - 2.2663 1.00 1332 152 0.1405 0.2034 REMARK 3 8 2.2663 - 2.1677 1.00 1350 149 0.1475 0.2069 REMARK 3 9 2.1677 - 2.0843 1.00 1323 141 0.1682 0.2004 REMARK 3 10 2.0843 - 2.0124 1.00 1328 145 0.1736 0.2436 REMARK 3 11 2.0124 - 1.9495 0.99 1320 141 0.1871 0.2509 REMARK 3 12 1.9495 - 1.8937 1.00 1317 145 0.1980 0.2730 REMARK 3 13 1.8937 - 1.8439 0.99 1294 142 0.2365 0.2583 REMARK 3 14 1.8439 - 1.8000 0.98 1357 135 0.2546 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1767 REMARK 3 ANGLE : 0.986 2403 REMARK 3 CHIRALITY : 0.036 282 REMARK 3 PLANARITY : 0.004 301 REMARK 3 DIHEDRAL : 15.960 654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2884 4.8624 8.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.4854 REMARK 3 T33: 0.2591 T12: -0.0820 REMARK 3 T13: 0.0023 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 5.7145 L22: 1.7005 REMARK 3 L33: 2.6208 L12: 0.4506 REMARK 3 L13: -0.9117 L23: -0.8867 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.5094 S13: 0.5686 REMARK 3 S21: -0.2870 S22: -0.0849 S23: -0.7212 REMARK 3 S31: -0.4538 S32: 0.7675 S33: -0.0899 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5906 2.5489 12.7350 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1139 REMARK 3 T33: 0.1183 T12: -0.0039 REMARK 3 T13: -0.0226 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.5238 L22: 1.4890 REMARK 3 L33: 4.1877 L12: -0.1717 REMARK 3 L13: 0.2898 L23: -0.8444 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.1269 S13: 0.0707 REMARK 3 S21: -0.0320 S22: -0.0719 S23: 0.0290 REMARK 3 S31: -0.2073 S32: 0.0728 S33: 0.0625 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.9048 -5.1171 25.4431 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1275 REMARK 3 T33: 0.1457 T12: 0.0197 REMARK 3 T13: 0.0050 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.9346 L22: 1.1651 REMARK 3 L33: 3.3065 L12: -0.2618 REMARK 3 L13: 0.6408 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.0950 S13: -0.0389 REMARK 3 S21: 0.0510 S22: -0.0334 S23: -0.0881 REMARK 3 S31: 0.1432 S32: 0.3189 S33: 0.0546 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC HF MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 701C3.DB027 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C09 REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M A.S., 0.1M BIS-TRIS, 25% PEG REMARK 280 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.53950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.67900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.53950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.67900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 597 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLN A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 GLU A 42 REMARK 465 PHE A 64 REMARK 465 ASN A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 512 2.09 REMARK 500 O HOH A 403 O HOH A 523 2.18 REMARK 500 O HOH A 450 O HOH A 523 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 506 O HOH A 588 2756 1.93 REMARK 500 O HOH A 566 O HOH A 582 3545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 150.94 74.37 REMARK 500 SER A 87 -128.22 -95.83 REMARK 500 ASP A 245 -156.35 -133.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 663 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 664 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 101.1 REMARK 620 3 HIS A 179 NE2 104.9 108.4 REMARK 620 4 S3C A 303 S9 124.3 108.7 108.6 REMARK 620 5 S3C A 303 S9 120.2 111.4 110.1 4.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 CYS A 198 SG 103.7 REMARK 620 3 HIS A 240 NE2 88.5 107.8 REMARK 620 4 S3C A 303 S9 92.0 128.9 121.1 REMARK 620 5 S3C A 303 S9 90.0 127.9 122.9 2.7 REMARK 620 6 S3C A 303 O8 159.1 96.9 81.2 78.0 80.5 REMARK 620 7 S3C A 303 O8 161.4 94.6 82.4 79.0 81.4 2.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S3C A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 DBREF 4TYT A 31 257 UNP P04190 BLA2_BACCE 31 257 SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY CYS LEU SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS SEQRES 18 A 227 THR LEU ASP LEU LEU LYS HET ZN A 301 1 HET ZN A 302 1 HET S3C A 303 30 HET SO4 A 304 5 HET GOL A 305 6 HETNAM ZN ZINC ION HETNAM S3C (2Z)-2-SULFANYL-3-(2,3,6-TRICHLOROPHENYL)PROP-2-ENOIC HETNAM 2 S3C ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 S3C C9 H5 CL3 O2 S FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *264(H2 O) HELIX 1 AA1 ASP A 90 GLN A 106 1 17 HELIX 2 AA2 HIS A 118 GLY A 123 1 6 HELIX 3 AA3 GLY A 124 GLY A 132 1 9 HELIX 4 AA4 THR A 138 ASN A 148 1 11 HELIX 5 AA5 CYS A 198 VAL A 200 5 3 HELIX 6 AA6 GLU A 218 TYR A 230 1 13 HELIX 7 AA7 LYS A 246 LEU A 256 1 11 SHEET 1 AA1 7 VAL A 38 LYS A 40 0 SHEET 2 AA1 7 ILE A 46 ASN A 52 -1 O ILE A 48 N ILE A 39 SHEET 3 AA1 7 VAL A 55 GLY A 62 -1 O VAL A 57 N SER A 49 SHEET 4 AA1 7 VAL A 69 THR A 78 -1 O VAL A 75 N TRP A 56 SHEET 5 AA1 7 GLY A 81 VAL A 85 -1 O VAL A 83 N LEU A 76 SHEET 6 AA1 7 VAL A 109 ILE A 113 1 O THR A 110 N LEU A 82 SHEET 7 AA1 7 LYS A 134 HIS A 136 1 O HIS A 136 N VAL A 112 SHEET 1 AA2 5 VAL A 160 PHE A 165 0 SHEET 2 AA2 5 MET A 168 PHE A 173 -1 O VAL A 170 N LEU A 163 SHEET 3 AA2 5 VAL A 185 TRP A 187 -1 O TRP A 187 N GLU A 171 SHEET 4 AA2 5 ILE A 193 GLY A 197 -1 O VAL A 195 N VAL A 186 SHEET 5 AA2 5 ALA A 235 PRO A 238 1 O VAL A 237 N LEU A 194 LINK NE2 HIS A 116 ZN ZN A 302 1555 1555 2.06 LINK ND1 HIS A 118 ZN ZN A 302 1555 1555 1.99 LINK OD1 ASP A 120 ZN ZN A 301 1555 1555 2.15 LINK NE2 HIS A 179 ZN ZN A 302 1555 1555 2.04 LINK SG CYS A 198 ZN ZN A 301 1555 1555 2.24 LINK NE2 HIS A 240 ZN ZN A 301 1555 1555 2.20 LINK ZN ZN A 301 S9 AS3C A 303 1555 1555 2.49 LINK ZN ZN A 301 S9 BS3C A 303 1555 1555 2.36 LINK ZN ZN A 301 O8 AS3C A 303 1555 1555 2.28 LINK ZN ZN A 301 O8 BS3C A 303 1555 1555 2.30 LINK ZN ZN A 302 S9 AS3C A 303 1555 1555 2.32 LINK ZN ZN A 302 S9 BS3C A 303 1555 1555 2.32 SITE 1 AC1 4 ASP A 120 CYS A 198 HIS A 240 S3C A 303 SITE 1 AC2 4 HIS A 116 HIS A 118 HIS A 179 S3C A 303 SITE 1 AC3 14 TRP A 89 HIS A 118 ASP A 120 HIS A 179 SITE 2 AC3 14 CYS A 198 LYS A 201 ASN A 210 ASP A 213 SITE 3 AC3 14 HIS A 240 ZN A 301 ZN A 302 HOH A 472 SITE 4 AC3 14 HOH A 416 HOH A 486 SITE 1 AC4 4 LYS A 103 LYS A 169 GLN A 190 HOH A 492 SITE 1 AC5 4 GLU A 130 ARG A 131 HOH A 431 HOH A 471 CRYST1 53.079 61.358 69.416 90.00 93.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018840 0.000000 0.000987 0.00000 SCALE2 0.000000 0.016298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014426 0.00000