HEADER RNA BINDING PROTEIN/RNA 09-JUL-14 4TZ0 TITLE DEAD-BOX HELICASE MSS116 BOUND TO SSRNA AND GDP-BEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-596; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*AP*AP*AP*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MSS116, YDR194C, YD9346.05C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-CT2; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ REVDAT 5 27-DEC-23 4TZ0 1 REMARK REVDAT 4 30-MAR-22 4TZ0 1 SOURCE REMARK LINK REVDAT 3 04-MAR-15 4TZ0 1 JRNL REVDAT 2 21-JAN-15 4TZ0 1 JRNL REVDAT 1 31-DEC-14 4TZ0 0 JRNL AUTH A.L.MALLAM,D.J.SIDOTE,A.M.LAMBOWITZ JRNL TITL MOLECULAR INSIGHTS INTO RNA AND DNA HELICASE EVOLUTION FROM JRNL TITL 2 THE DETERMINANTS OF SPECIFICITY FOR A DEAD-BOX RNA HELICASE. JRNL REF ELIFE V. 3 04630 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25497230 JRNL DOI 10.7554/ELIFE.04630 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2792 - 5.0611 1.00 2747 145 0.2038 0.2140 REMARK 3 2 5.0611 - 4.0178 1.00 2623 149 0.1922 0.2222 REMARK 3 3 4.0178 - 3.5101 1.00 2580 133 0.2309 0.2532 REMARK 3 4 3.5101 - 3.1893 1.00 2570 151 0.2484 0.2883 REMARK 3 5 3.1893 - 2.9607 1.00 2561 144 0.2623 0.2854 REMARK 3 6 2.9607 - 2.7862 1.00 2539 125 0.2684 0.3071 REMARK 3 7 2.7862 - 2.6467 1.00 2536 129 0.2729 0.3334 REMARK 3 8 2.6467 - 2.5315 1.00 2569 125 0.2786 0.3261 REMARK 3 9 2.5315 - 2.4340 1.00 2538 131 0.2801 0.3705 REMARK 3 10 2.4340 - 2.3500 1.00 2520 131 0.2974 0.3351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4154 REMARK 3 ANGLE : 0.710 5663 REMARK 3 CHIRALITY : 0.029 674 REMARK 3 PLANARITY : 0.003 694 REMARK 3 DIHEDRAL : 12.765 1547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 % TACSIMATE, PH 8.0, 12 % PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.98950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.30700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.98950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.30700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 596 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LEU A 90 CG CD1 CD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 138 CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 LYS A 323 CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 ASN A 354 CG OD1 ND2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 414 CD CE NZ REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLU A 473 CD OE1 OE2 REMARK 470 LYS A 482 CD CE NZ REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 LYS A 542 CE NZ REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 ARG A 545 CZ NH1 NH2 REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 ASP A 578 CG OD1 OD2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 ARG A 584 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 589 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 228 CG REMARK 480 ARG A 278 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 94 -170.89 -63.16 REMARK 500 ASN A 98 36.89 -88.98 REMARK 500 GLU A 110 -15.73 68.88 REMARK 500 PRO A 139 35.13 -94.58 REMARK 500 HIS A 146 78.89 -171.51 REMARK 500 ASN A 207 100.22 -161.25 REMARK 500 LYS A 294 -73.46 -80.16 REMARK 500 ASP A 309 -152.17 -135.79 REMARK 500 THR A 520 41.13 -106.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 601 O1B REMARK 620 2 HOH A 709 O 83.3 REMARK 620 3 HOH A 715 O 110.5 163.0 REMARK 620 4 HOH A 716 O 103.2 88.6 97.4 REMARK 620 5 HOH A 733 O 164.9 82.2 83.2 80.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYN RELATED DB: PDB REMARK 900 RELATED ID: 4TYW RELATED DB: PDB REMARK 900 RELATED ID: 4TYY RELATED DB: PDB REMARK 900 RELATED ID: 4TZ6 RELATED DB: PDB DBREF 4TZ0 A 88 596 UNP P15424 MS116_YEAST 88 596 DBREF 4TZ0 B 1 7 PDB 4TZ0 4TZ0 1 7 SEQRES 1 A 509 SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SER LYS SEQRES 2 A 509 GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY VAL LEU SEQRES 3 A 509 ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET GLU PHE SEQRES 4 A 509 PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE LYS PRO SEQRES 5 A 509 ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA ARG ALA SEQRES 6 A 509 LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU ILE PRO SEQRES 7 A 509 ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SER GLN SEQRES 8 A 509 TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR ARG ASP SEQRES 9 A 509 LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS ILE HIS SEQRES 10 A 509 ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS VAL SER SEQRES 11 A 509 LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET ASN LYS SEQRES 12 A 509 MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA THR PRO SEQRES 13 A 509 GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER ASN LYS SEQRES 14 A 509 PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP GLU ALA SEQRES 15 A 509 ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP LEU GLU SEQRES 16 A 509 THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER LYS SER SEQRES 17 A 509 ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA THR LEU SEQRES 18 A 509 ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE MET ASN SEQRES 19 A 509 LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP LYS ASN SEQRES 20 A 509 GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER VAL VAL SEQRES 21 A 509 ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA ALA VAL SEQRES 22 A 509 GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SER ASN SEQRES 23 A 509 TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS PHE THR SEQRES 24 A 509 SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE LYS LYS SEQRES 25 A 509 ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE THR GLN SEQRES 26 A 509 ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS LYS ASP SEQRES 27 A 509 GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY ALA ARG SEQRES 28 A 509 GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU GLN ILE SEQRES 29 A 509 GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS ARG ILE SEQRES 30 A 509 GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SER VAL SEQRES 31 A 509 LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL ARG GLU SEQRES 32 A 509 LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS GLN GLU SEQRES 33 A 509 LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU VAL LEU SEQRES 34 A 509 GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER ASP ILE SEQRES 35 A 509 VAL ILE SER LEU ILE SER SER TYR ARG SER CYS ILE LYS SEQRES 36 A 509 GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO GLU ILE SEQRES 37 A 509 ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO GLN LEU SEQRES 38 A 509 LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS LEU GLY SEQRES 39 A 509 LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE GLU ILE SEQRES 40 A 509 ARG ASP SEQRES 1 B 7 A A A A A A A HET GDP A 601 38 HET BEF A 602 4 HET MG A 603 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 BEF BE F3 1- FORMUL 5 MG MG 2+ FORMUL 6 HOH *61(H2 O) HELIX 1 AA1 THR A 103 GLU A 109 1 7 HELIX 2 AA2 ASP A 114 ARG A 123 1 10 HELIX 3 AA3 THR A 130 LEU A 141 1 12 HELIX 4 AA4 GLY A 157 THR A 173 1 17 HELIX 5 AA5 THR A 189 ASN A 207 1 19 HELIX 6 AA6 TYR A 208 LYS A 211 5 4 HELIX 7 AA7 ASP A 223 ARG A 235 1 13 HELIX 8 AA8 THR A 242 PHE A 258 1 17 HELIX 9 AA9 GLU A 268 LEU A 273 1 6 HELIX 10 AB1 PHE A 277 ASN A 292 1 16 HELIX 11 AB2 ASP A 310 ALA A 316 1 7 HELIX 12 AB3 ALA A 353 ARG A 370 1 18 HELIX 13 AB4 THR A 382 LYS A 398 1 17 HELIX 14 AB5 THR A 411 ASP A 425 1 15 HELIX 15 AB6 ASP A 434 ALA A 437 5 4 HELIX 16 AB7 ALA A 458 GLY A 465 1 8 HELIX 17 AB8 GLU A 484 ALA A 494 1 11 HELIX 18 AB9 SER A 508 VAL A 519 1 12 HELIX 19 AC1 GLU A 522 CYS A 540 1 19 HELIX 20 AC2 SER A 547 SER A 557 1 11 HELIX 21 AC3 SER A 557 LEU A 563 1 7 HELIX 22 AC4 SER A 573 LEU A 580 1 8 HELIX 23 AC5 GLY A 581 ARG A 584 5 4 HELIX 24 AC6 SER A 585 ALA A 590 1 6 SHEET 1 AA1 8 LYS A 89 VAL A 93 0 SHEET 2 AA1 8 GLU A 324 LEU A 328 1 O PHE A 327 N ILE A 91 SHEET 3 AA1 8 ASP A 147 ARG A 151 1 N ILE A 149 O LEU A 328 SHEET 4 AA1 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 AA1 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 AA1 8 ALA A 183 VAL A 186 1 N VAL A 184 O VAL A 265 SHEET 7 AA1 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 AA1 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 AA2 7 ILE A 403 PHE A 406 0 SHEET 2 AA2 7 GLY A 428 CYS A 432 1 O ILE A 429 N LEU A 404 SHEET 3 AA2 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 AA2 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 AA2 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 AA2 7 ILE A 342 SER A 349 1 N VAL A 347 O LEU A 478 SHEET 7 AA2 7 LYS A 501 TYR A 505 1 O GLU A 503 N ILE A 348 SHEET 1 AA3 2 ILE A 570 VAL A 572 0 SHEET 2 AA3 2 PHE A 592 ILE A 594 1 O GLU A 593 N VAL A 572 LINK O1B GDP A 601 MG MG A 603 1555 1555 2.05 LINK MG MG A 603 O HOH A 709 1555 1555 2.10 LINK MG MG A 603 O HOH A 715 1555 1555 2.25 LINK MG MG A 603 O HOH A 716 1555 1555 2.13 LINK MG MG A 603 O HOH A 733 1555 1555 2.13 CISPEP 1 LYS A 138 PRO A 139 0 3.63 CISPEP 2 GLU A 144 ASP A 145 0 0.61 SITE 1 AC1 16 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC1 16 GLY A 155 THR A 156 GLY A 157 LYS A 158 SITE 3 AC1 16 THR A 159 PHE A 160 ASP A 441 ARG A 469 SITE 4 AC1 16 SER A 470 BEF A 602 MG A 603 HOH A 709 SITE 1 AC2 13 THR A 154 LYS A 158 GLU A 268 GLY A 439 SITE 2 AC2 13 ARG A 466 ARG A 469 GDP A 601 MG A 603 SITE 3 AC2 13 HOH A 709 HOH A 715 HOH A 719 HOH A 732 SITE 4 AC2 13 HOH A 733 SITE 1 AC3 6 GDP A 601 BEF A 602 HOH A 709 HOH A 715 SITE 2 AC3 6 HOH A 716 HOH A 733 CRYST1 89.979 126.614 55.553 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011114 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018001 0.00000