HEADER LIGASE 10-JUL-14 4TZU TITLE CRYSTAL STRUCTURE OF MURINE CEREBLON IN COMPLEX WITH POMALIDOMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CEREBLON; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PROTEIN PIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRBN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN LIGASE, DCAF, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.P.CHAMBERLAIN,B.PAGARIGAN,S.DELKER,B.LEON REVDAT 3 27-DEC-23 4TZU 1 REMARK REVDAT 2 27-SEP-17 4TZU 1 SOURCE JRNL REMARK ATOM REVDAT 1 06-AUG-14 4TZU 0 JRNL AUTH P.P.CHAMBERLAIN,M.WANG,M.RILEY,S.DELKER,T.ITO,A.HIDEKI, JRNL AUTH 2 T.MORI,H.HANDA,T.HAKOSHIMA,T.O.DANIEL,B.E.CATHERS, JRNL AUTH 3 A.LOPEZ-GIRONA,K.MILLER,G.CARMEL,B.PAGARIGAN,B.LEON, JRNL AUTH 4 E.RYCHAK,L.CORRAL,Y.REN JRNL TITL STRUCTURAL BASIS FOR RESPONSIVENESS TO THALIDOMIDE-ANALOG JRNL TITL 2 DRUGS DEFINED BY THE CRYSTAL STRUCTURE OF THE HUMAN JRNL TITL 3 CEREBLON:DDB1:LENALIDOMIDE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 30286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3050 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4153 ; 1.710 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ;17.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.531 ;23.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;15.679 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.686 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2180 ; 0.019 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 D 321 426 A 321 426 121 0.060 0.050 REMARK 3 2 D 321 425 B 321 425 116 0.070 0.050 REMARK 3 3 D 321 426 C 321 426 112 0.060 0.050 REMARK 3 4 A 321 425 B 321 425 120 0.070 0.050 REMARK 3 5 A 321 426 C 321 426 120 0.060 0.050 REMARK 3 6 B 321 425 C 321 425 116 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 321 D 426 REMARK 3 ORIGIN FOR THE GROUP (A): -54.6516 -43.2209 -9.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0613 REMARK 3 T33: 0.0426 T12: 0.0217 REMARK 3 T13: -0.0026 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.0366 L22: 1.2333 REMARK 3 L33: 1.5293 L12: -1.0859 REMARK 3 L13: -0.3180 L23: 0.4528 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0670 S13: 0.0883 REMARK 3 S21: -0.0687 S22: 0.1421 S23: -0.0696 REMARK 3 S31: -0.0244 S32: 0.0587 S33: -0.1709 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): -43.1673 -61.8540 -17.2054 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0567 REMARK 3 T33: 0.0457 T12: 0.0656 REMARK 3 T13: -0.0345 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.3609 L22: 1.1766 REMARK 3 L33: 1.8903 L12: -0.7851 REMARK 3 L13: 0.6941 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: 0.1434 S12: 0.0596 S13: -0.0559 REMARK 3 S21: -0.1342 S22: -0.0514 S23: -0.0763 REMARK 3 S31: 0.0855 S32: 0.1629 S33: -0.0920 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 321 B 427 REMARK 3 ORIGIN FOR THE GROUP (A): -62.7073 -54.8741 -27.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0849 REMARK 3 T33: 0.1052 T12: 0.0354 REMARK 3 T13: -0.0806 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 1.1560 L22: 1.4598 REMARK 3 L33: 2.0198 L12: 0.0054 REMARK 3 L13: 0.4706 L23: 0.1664 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.2229 S13: -0.0854 REMARK 3 S21: -0.1759 S22: -0.0977 S23: 0.2563 REMARK 3 S31: 0.1848 S32: 0.0979 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 321 C 426 REMARK 3 ORIGIN FOR THE GROUP (A): -82.0343 -54.6468 -42.6005 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.1251 REMARK 3 T33: 0.1277 T12: 0.0048 REMARK 3 T13: -0.0541 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 2.1972 L22: 2.8585 REMARK 3 L33: 2.2728 L12: -0.0939 REMARK 3 L13: 1.0405 L23: 0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: -0.1918 S13: -0.1245 REMARK 3 S21: 0.1242 S22: 0.0367 S23: -0.2250 REMARK 3 S31: 0.0549 S32: 0.1555 S33: 0.0457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4TZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 101.357 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20400 REMARK 200 R SYM FOR SHELL (I) : 0.20400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH5, 600-800MM REMARK 280 AMMONIUM SULFATE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 71.67000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 71.67000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 71.67000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 71.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -143.34000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -143.34000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -143.34000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 -143.34000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 610 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 344 REMARK 465 CYS A 345 REMARK 465 GLY A 346 REMARK 465 PRO A 347 REMARK 465 MET A 348 REMARK 465 ALA A 349 REMARK 465 ALA A 350 REMARK 465 TYR A 351 REMARK 465 VAL A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 465 HIS A 355 REMARK 465 GLY A 356 REMARK 465 TYR A 357 REMARK 465 VAL A 358 REMARK 465 HIS A 359 REMARK 465 THR A 427 REMARK 465 ILE A 428 REMARK 465 LEU B 344 REMARK 465 CYS B 345 REMARK 465 GLY B 346 REMARK 465 PRO B 347 REMARK 465 MET B 348 REMARK 465 ALA B 349 REMARK 465 ALA B 350 REMARK 465 TYR B 351 REMARK 465 VAL B 352 REMARK 465 ASN B 353 REMARK 465 PRO B 354 REMARK 465 HIS B 355 REMARK 465 GLY B 356 REMARK 465 TYR B 357 REMARK 465 VAL B 358 REMARK 465 HIS B 359 REMARK 465 ILE B 428 REMARK 465 LEU C 344 REMARK 465 CYS C 345 REMARK 465 GLY C 346 REMARK 465 PRO C 347 REMARK 465 MET C 348 REMARK 465 ALA C 349 REMARK 465 ALA C 350 REMARK 465 TYR C 351 REMARK 465 VAL C 352 REMARK 465 ASN C 353 REMARK 465 PRO C 354 REMARK 465 HIS C 355 REMARK 465 GLY C 356 REMARK 465 TYR C 357 REMARK 465 VAL C 358 REMARK 465 HIS C 359 REMARK 465 THR C 427 REMARK 465 ILE C 428 REMARK 465 LEU D 344 REMARK 465 CYS D 345 REMARK 465 GLY D 346 REMARK 465 PRO D 347 REMARK 465 MET D 348 REMARK 465 ALA D 349 REMARK 465 ALA D 350 REMARK 465 TYR D 351 REMARK 465 VAL D 352 REMARK 465 ASN D 353 REMARK 465 PRO D 354 REMARK 465 HIS D 355 REMARK 465 GLY D 356 REMARK 465 TYR D 357 REMARK 465 VAL D 358 REMARK 465 HIS D 359 REMARK 465 THR D 427 REMARK 465 ILE D 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 502 O HOH A 624 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 399 CG HIS B 399 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 426 C - N - CD ANGL. DEV. = -20.4 DEGREES REMARK 500 PRO B 426 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO B 426 C - N - CD ANGL. DEV. = -20.1 DEGREES REMARK 500 PRO C 426 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO D 426 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 PRO D 426 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 329 -41.76 71.53 REMARK 500 PRO A 413 149.65 -37.28 REMARK 500 GLN B 329 -26.92 66.16 REMARK 500 ALA B 397 14.54 57.88 REMARK 500 PRO B 413 152.46 -45.14 REMARK 500 PRO B 426 163.23 44.03 REMARK 500 GLN C 329 12.22 51.06 REMARK 500 HIS C 399 98.07 -66.26 REMARK 500 PRO C 413 146.39 -39.52 REMARK 500 GLN D 329 -34.25 75.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 412 PRO A 413 -46.41 REMARK 500 LEU A 425 PRO A 426 -126.32 REMARK 500 SER B 412 PRO B 413 -39.92 REMARK 500 LEU B 425 PRO B 426 -118.12 REMARK 500 SER C 412 PRO C 413 -48.33 REMARK 500 LEU C 425 PRO C 426 -116.33 REMARK 500 SER D 412 PRO D 413 -43.09 REMARK 500 LEU D 425 PRO D 426 -110.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 412 -11.44 REMARK 500 SER B 412 -11.37 REMARK 500 SER C 412 -11.67 REMARK 500 SER D 412 -10.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 325 SG REMARK 620 2 CYS A 328 SG 106.0 REMARK 620 3 CYS A 393 SG 113.1 106.4 REMARK 620 4 CYS A 396 SG 98.6 118.9 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 325 SG REMARK 620 2 CYS B 328 SG 106.1 REMARK 620 3 CYS B 393 SG 112.6 102.6 REMARK 620 4 CYS B 396 SG 97.1 123.2 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 325 SG REMARK 620 2 CYS C 328 SG 110.4 REMARK 620 3 CYS C 393 SG 112.0 109.8 REMARK 620 4 CYS C 396 SG 96.0 120.8 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 325 SG REMARK 620 2 CYS D 328 SG 107.7 REMARK 620 3 CYS D 393 SG 115.1 104.6 REMARK 620 4 CYS D 396 SG 96.9 122.8 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y70 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y70 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y70 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y70 D 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TZC RELATED DB: PDB REMARK 900 RELATED ID: 4TZ4 RELATED DB: PDB DBREF 4TZU A 321 428 UNP Q8C7D2 CRBN_MOUSE 322 429 DBREF 4TZU B 321 428 UNP Q8C7D2 CRBN_MOUSE 322 429 DBREF 4TZU C 321 428 UNP Q8C7D2 CRBN_MOUSE 322 429 DBREF 4TZU D 321 428 UNP Q8C7D2 CRBN_MOUSE 322 429 SEQRES 1 A 108 THR SER LEU CYS CYS LYS GLN CYS GLN GLU THR GLU ILE SEQRES 2 A 108 THR THR LYS ASN GLU ILE PHE SER LEU SER LEU CYS GLY SEQRES 3 A 108 PRO MET ALA ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS SEQRES 4 A 108 GLU THR LEU THR VAL TYR LYS ALA SER ASN LEU ASN LEU SEQRES 5 A 108 ILE GLY ARG PRO SER THR VAL HIS SER TRP PHE PRO GLY SEQRES 6 A 108 TYR ALA TRP THR ILE ALA GLN CYS LYS ILE CYS ALA SER SEQRES 7 A 108 HIS ILE GLY TRP LYS PHE THR ALA THR LYS LYS ASP MET SEQRES 8 A 108 SER PRO GLN LYS PHE TRP GLY LEU THR ARG SER ALA LEU SEQRES 9 A 108 LEU PRO THR ILE SEQRES 1 B 108 THR SER LEU CYS CYS LYS GLN CYS GLN GLU THR GLU ILE SEQRES 2 B 108 THR THR LYS ASN GLU ILE PHE SER LEU SER LEU CYS GLY SEQRES 3 B 108 PRO MET ALA ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS SEQRES 4 B 108 GLU THR LEU THR VAL TYR LYS ALA SER ASN LEU ASN LEU SEQRES 5 B 108 ILE GLY ARG PRO SER THR VAL HIS SER TRP PHE PRO GLY SEQRES 6 B 108 TYR ALA TRP THR ILE ALA GLN CYS LYS ILE CYS ALA SER SEQRES 7 B 108 HIS ILE GLY TRP LYS PHE THR ALA THR LYS LYS ASP MET SEQRES 8 B 108 SER PRO GLN LYS PHE TRP GLY LEU THR ARG SER ALA LEU SEQRES 9 B 108 LEU PRO THR ILE SEQRES 1 C 108 THR SER LEU CYS CYS LYS GLN CYS GLN GLU THR GLU ILE SEQRES 2 C 108 THR THR LYS ASN GLU ILE PHE SER LEU SER LEU CYS GLY SEQRES 3 C 108 PRO MET ALA ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS SEQRES 4 C 108 GLU THR LEU THR VAL TYR LYS ALA SER ASN LEU ASN LEU SEQRES 5 C 108 ILE GLY ARG PRO SER THR VAL HIS SER TRP PHE PRO GLY SEQRES 6 C 108 TYR ALA TRP THR ILE ALA GLN CYS LYS ILE CYS ALA SER SEQRES 7 C 108 HIS ILE GLY TRP LYS PHE THR ALA THR LYS LYS ASP MET SEQRES 8 C 108 SER PRO GLN LYS PHE TRP GLY LEU THR ARG SER ALA LEU SEQRES 9 C 108 LEU PRO THR ILE SEQRES 1 D 108 THR SER LEU CYS CYS LYS GLN CYS GLN GLU THR GLU ILE SEQRES 2 D 108 THR THR LYS ASN GLU ILE PHE SER LEU SER LEU CYS GLY SEQRES 3 D 108 PRO MET ALA ALA TYR VAL ASN PRO HIS GLY TYR VAL HIS SEQRES 4 D 108 GLU THR LEU THR VAL TYR LYS ALA SER ASN LEU ASN LEU SEQRES 5 D 108 ILE GLY ARG PRO SER THR VAL HIS SER TRP PHE PRO GLY SEQRES 6 D 108 TYR ALA TRP THR ILE ALA GLN CYS LYS ILE CYS ALA SER SEQRES 7 D 108 HIS ILE GLY TRP LYS PHE THR ALA THR LYS LYS ASP MET SEQRES 8 D 108 SER PRO GLN LYS PHE TRP GLY LEU THR ARG SER ALA LEU SEQRES 9 D 108 LEU PRO THR ILE HET SO4 A 501 5 HET SO4 A 502 5 HET ZN A 503 1 HET Y70 A 504 20 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET ZN B 504 1 HET Y70 B 505 20 HET SO4 C 501 5 HET SO4 C 502 5 HET ZN C 503 1 HET Y70 C 504 20 HET SO4 D 501 5 HET ZN D 502 1 HET Y70 D 503 20 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM Y70 S-POMALIDOMIDE FORMUL 5 SO4 8(O4 S 2-) FORMUL 7 ZN 4(ZN 2+) FORMUL 8 Y70 4(C13 H11 N3 O4) FORMUL 21 HOH *181(H2 O) HELIX 1 AA1 ASN A 337 ILE A 339 5 3 HELIX 2 AA2 ASN B 337 ILE B 339 5 3 HELIX 3 AA3 ASN C 337 ILE C 339 5 3 HELIX 4 AA4 ASN D 337 ILE D 339 5 3 SHEET 1 AA1 3 GLU A 332 THR A 335 0 SHEET 2 AA1 3 SER A 322 CYS A 325 -1 N LEU A 323 O ILE A 333 SHEET 3 AA1 3 LEU A 424 LEU A 425 -1 O LEU A 425 N CYS A 324 SHEET 1 AA2 5 THR A 361 VAL A 364 0 SHEET 2 AA2 5 LYS A 415 THR A 420 -1 O LEU A 419 N LEU A 362 SHEET 3 AA2 5 HIS A 399 ALA A 406 -1 N PHE A 404 O PHE A 416 SHEET 4 AA2 5 TYR A 386 CYS A 393 -1 N ALA A 391 O GLY A 401 SHEET 5 AA2 5 LEU A 370 SER A 377 -1 N ASN A 371 O GLN A 392 SHEET 1 AA3 3 GLU B 332 THR B 335 0 SHEET 2 AA3 3 SER B 322 CYS B 325 -1 N LEU B 323 O ILE B 333 SHEET 3 AA3 3 LEU B 424 LEU B 425 -1 O LEU B 425 N CYS B 324 SHEET 1 AA4 5 THR B 361 VAL B 364 0 SHEET 2 AA4 5 LYS B 415 THR B 420 -1 O LEU B 419 N LEU B 362 SHEET 3 AA4 5 HIS B 399 ALA B 406 -1 N PHE B 404 O PHE B 416 SHEET 4 AA4 5 TYR B 386 CYS B 393 -1 N ALA B 387 O THR B 405 SHEET 5 AA4 5 LEU B 370 SER B 377 -1 N ASN B 371 O GLN B 392 SHEET 1 AA5 3 GLU C 332 THR C 335 0 SHEET 2 AA5 3 SER C 322 CYS C 325 -1 N LEU C 323 O ILE C 333 SHEET 3 AA5 3 LEU C 424 LEU C 425 -1 O LEU C 425 N CYS C 324 SHEET 1 AA6 5 THR C 361 VAL C 364 0 SHEET 2 AA6 5 LYS C 415 THR C 420 -1 O LEU C 419 N LEU C 362 SHEET 3 AA6 5 HIS C 399 ALA C 406 -1 N ILE C 400 O THR C 420 SHEET 4 AA6 5 TYR C 386 CYS C 393 -1 N ALA C 387 O THR C 405 SHEET 5 AA6 5 LEU C 370 SER C 377 -1 N SER C 377 O TRP C 388 SHEET 1 AA7 3 GLU D 332 THR D 335 0 SHEET 2 AA7 3 SER D 322 CYS D 325 -1 N LEU D 323 O ILE D 333 SHEET 3 AA7 3 LEU D 424 LEU D 425 -1 O LEU D 425 N CYS D 324 SHEET 1 AA8 5 THR D 361 VAL D 364 0 SHEET 2 AA8 5 LYS D 415 THR D 420 -1 O LEU D 419 N LEU D 362 SHEET 3 AA8 5 HIS D 399 ALA D 406 -1 N PHE D 404 O PHE D 416 SHEET 4 AA8 5 TYR D 386 CYS D 393 -1 N ALA D 391 O GLY D 401 SHEET 5 AA8 5 LEU D 370 SER D 377 -1 N ASN D 371 O GLN D 392 LINK SG CYS A 325 ZN ZN A 503 1555 1555 2.36 LINK SG CYS A 328 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 393 ZN ZN A 503 1555 1555 2.35 LINK SG CYS A 396 ZN ZN A 503 1555 1555 2.36 LINK SG CYS B 325 ZN ZN B 504 1555 1555 2.43 LINK SG CYS B 328 ZN ZN B 504 1555 1555 2.26 LINK SG CYS B 393 ZN ZN B 504 1555 1555 2.37 LINK SG CYS B 396 ZN ZN B 504 1555 1555 2.35 LINK SG CYS C 325 ZN ZN C 503 1555 1555 2.33 LINK SG CYS C 328 ZN ZN C 503 1555 1555 2.13 LINK SG CYS C 393 ZN ZN C 503 1555 1555 2.44 LINK SG CYS C 396 ZN ZN C 503 1555 1555 2.49 LINK SG CYS D 325 ZN ZN D 502 1555 1555 2.37 LINK SG CYS D 328 ZN ZN D 502 1555 1555 2.29 LINK SG CYS D 393 ZN ZN D 502 1555 1555 2.36 LINK SG CYS D 396 ZN ZN D 502 1555 1555 2.35 SITE 1 AC1 10 LYS A 366 LYS A 403 LYS A 415 TRP A 417 SITE 2 AC1 10 HOH A 617 HOH A 625 HOH A 647 SO4 B 502 SITE 3 AC1 10 PRO D 413 GLN D 414 SITE 1 AC2 10 PRO A 413 GLN A 414 HOH A 618 HOH A 619 SITE 2 AC2 10 HOH A 624 LYS B 366 LYS B 403 LYS B 415 SITE 3 AC2 10 TRP B 417 HOH B 604 SITE 1 AC3 4 CYS A 325 CYS A 328 CYS A 393 CYS A 396 SITE 1 AC4 10 HIS A 380 SER A 381 TRP A 382 TRP A 388 SITE 2 AC4 10 TRP A 402 PHE A 404 HOH A 604 THR D 361 SITE 3 AC4 10 TRP D 382 Y70 D 503 SITE 1 AC5 9 PRO B 413 GLN B 414 LYS B 415 SO4 B 502 SITE 2 AC5 9 HOH B 611 LYS D 366 LYS D 415 HOH D 616 SITE 3 AC5 9 HOH D 618 SITE 1 AC6 8 LYS A 366 LYS A 415 SO4 A 501 LYS B 366 SITE 2 AC6 8 LYS B 415 SO4 B 501 LYS D 366 LYS D 415 SITE 1 AC7 2 HIS B 380 HIS C 380 SITE 1 AC8 4 CYS B 325 CYS B 328 CYS B 393 CYS B 396 SITE 1 AC9 10 HIS B 380 SER B 381 TRP B 382 TRP B 388 SITE 2 AC9 10 TRP B 402 PHE B 404 HOH B 619 THR C 361 SITE 3 AC9 10 TRP C 382 Y70 C 504 SITE 1 AD1 7 LYS C 366 LYS C 403 PRO C 413 GLN C 414 SITE 2 AD1 7 LYS C 415 SO4 C 502 HOH C 607 SITE 1 AD2 3 LYS C 366 LYS C 415 SO4 C 501 SITE 1 AD3 5 CYS C 325 CYS C 328 THR C 331 CYS C 393 SITE 2 AD3 5 CYS C 396 SITE 1 AD4 8 TRP B 382 Y70 B 505 HIS C 380 SER C 381 SITE 2 AD4 8 TRP C 382 TRP C 388 TRP C 402 PHE C 404 SITE 1 AD5 2 HIS A 380 HIS D 380 SITE 1 AD6 4 CYS D 325 CYS D 328 CYS D 393 CYS D 396 SITE 1 AD7 10 GLU A 360 THR A 361 TRP A 382 Y70 A 504 SITE 2 AD7 10 HIS D 380 SER D 381 TRP D 382 TRP D 388 SITE 3 AD7 10 TRP D 402 PHE D 404 CRYST1 143.340 143.340 143.340 90.00 90.00 90.00 I 2 3 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006976 0.00000