HEADER RIBOSOMAL PROTEIN/RNA 11-JUL-14 4TZW TITLE CO-CRYSTALS OF THE TERNARY COMPLEX CONTAINING A T-BOX STEM I RNA, ITS TITLE 2 COGNATE TRNAGLY, AND B. SUBTILIS YBXF PROTEIN, TREATED BY REMOVING TITLE 3 LITHIUM SULFATE AND REPLACING MG2+ WITH SR2+ POST CRYSTALLIZATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-ASSOCIATED PROTEIN L7AE-LIKE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENGINEERED TRNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: T-BOX STEM I; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RPLGB, YBAB, YBXF, BSU01090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 12 ORGANISM_TAXID: 1423; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; SOURCE 16 ORGANISM_TAXID: 221109 KEYWDS RNA, RIBOSWITCH, TRNA, T-BOX, RIBOSOMAL PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,A.R.FERRE-D'AMARE REVDAT 4 15-NOV-23 4TZW 1 REMARK REVDAT 3 27-SEP-23 4TZW 1 SOURCE JRNL REMARK LINK REVDAT 2 24-SEP-14 4TZW 1 JRNL REVDAT 1 10-SEP-14 4TZW 0 JRNL AUTH J.ZHANG,A.R.FERRE-D'AMARE JRNL TITL DRAMATIC IMPROVEMENT OF CRYSTALS OF LARGE RNAS BY CATION JRNL TITL 2 REPLACEMENT AND DEHYDRATION. JRNL REF STRUCTURE V. 22 1363 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25185828 JRNL DOI 10.1016/J.STR.2014.07.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZHANG,A.R.FERRE-D'AMARE REMARK 1 TITL CO-CRYSTAL STRUCTURE OF A T-BOX RIBOSWITCH STEM I DOMAIN IN REMARK 1 TITL 2 COMPLEX WITH ITS COGNATE TRNA. REMARK 1 REF NATURE V. 500 363 2013 REMARK 1 REFN ESSN 1476-4687 REMARK 1 PMID 23892783 REMARK 1 DOI 10.1038/NATURE12440 REMARK 2 REMARK 2 RESOLUTION. 4.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 7638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7886 - 7.9759 0.96 1355 155 0.2485 0.2929 REMARK 3 2 7.9759 - 6.3360 0.97 1369 151 0.3010 0.3896 REMARK 3 3 6.3360 - 5.5367 0.98 1392 152 0.2377 0.3707 REMARK 3 4 5.5367 - 5.0311 0.99 1382 153 0.2635 0.3468 REMARK 3 5 5.0311 - 4.6710 0.99 1374 155 0.3393 0.4041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.780 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4769 REMARK 3 ANGLE : 1.681 7334 REMARK 3 CHIRALITY : 0.069 983 REMARK 3 PLANARITY : 0.007 265 REMARK 3 DIHEDRAL : 17.787 2286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4428 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.670 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4LCK REMARK 200 REMARK 200 REMARK: RECTANGULAR OR RHOMBIC PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS (HCL) PH 6.5, 300 MM REMARK 280 LI2SO4, AND 20% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.47100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.65800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 201.70650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.65800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.65800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.23550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.65800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 201.70650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.65800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.65800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.23550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 134.47100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1015.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SR SR B 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 LYS A 64 CD CE NZ REMARK 470 LYS A 67 CD CE NZ REMARK 470 ILE A 71 CG1 CG2 CD1 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 ILE A 81 CG1 CG2 CD1 REMARK 470 U B 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 16 C6 REMARK 470 U B 46 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 46 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SR SR C 202 SR SR C 221 2.16 REMARK 500 O2 C B 30 N2 G B 39 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 9 N9 A B 9 C4 0.038 REMARK 500 G B 72 N9 G B 72 C4 -0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 41 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 U B 8 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 G B 17 C8 - N9 - C4 ANGL. DEV. = 4.1 DEGREES REMARK 500 G B 17 N9 - C4 - C5 ANGL. DEV. = -3.7 DEGREES REMARK 500 G B 17 N1 - C6 - O6 ANGL. DEV. = 4.0 DEGREES REMARK 500 G B 17 C5 - C6 - O6 ANGL. DEV. = -3.9 DEGREES REMARK 500 G B 18 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 G B 18 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 C B 27 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 G B 33 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 C B 60 C6 - N1 - C2 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 72 N9 - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 G B 72 N3 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 G B 72 C8 - N9 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 G B 72 C8 - N9 - C1' ANGL. DEV. = 7.9 DEGREES REMARK 500 G B 72 C4 - N9 - C1' ANGL. DEV. = -12.1 DEGREES REMARK 500 G C 3 C4 - C5 - N7 ANGL. DEV. = -2.6 DEGREES REMARK 500 G C 3 C5 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 G C 15 N3 - C4 - C5 ANGL. DEV. = 3.3 DEGREES REMARK 500 C C 34 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 U C 37 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 G C 38 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 A C 39 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 A C 39 N1 - C6 - N6 ANGL. DEV. = 4.8 DEGREES REMARK 500 A C 42 N3 - C4 - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 G C 43 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 G C 43 N3 - C4 - C5 ANGL. DEV. = 4.2 DEGREES REMARK 500 G C 43 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 G C 43 C5 - N7 - C8 ANGL. DEV. = -3.7 DEGREES REMARK 500 G C 43 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 C C 44 C6 - N1 - C2 ANGL. DEV. = 5.8 DEGREES REMARK 500 C C 44 N3 - C4 - C5 ANGL. DEV. = 2.4 DEGREES REMARK 500 U C 50 O5' - P - OP2 ANGL. DEV. = -11.5 DEGREES REMARK 500 G C 57 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 U C 58 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 G C 59 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 G C 59 N9 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 G C 63 C8 - N9 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 G C 74 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 C C 89 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 C C 94 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 A C 96 N1 - C2 - N3 ANGL. DEV. = 3.1 DEGREES REMARK 500 A C 99 N9 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 A C 99 C6 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 A C 99 N1 - C6 - N6 ANGL. DEV. = 3.7 DEGREES REMARK 500 C C 100 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 C C 102 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 159.24 -46.55 REMARK 500 ALA A 9 -174.24 102.13 REMARK 500 LYS A 10 -68.98 -102.61 REMARK 500 GLU A 60 -97.30 -58.41 REMARK 500 GLU A 72 57.20 -100.24 REMARK 500 VAL A 73 -21.59 -155.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 8 ALA A 9 147.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 111 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 52 O6 REMARK 620 2 A B 57 O2' 91.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 206 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 7 N1 REMARK 620 2 G C 97 N7 102.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 221 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 39 OP2 REMARK 620 2 C C 102 O3' 76.1 REMARK 620 3 C C 102 O2' 74.5 2.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 219 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U C 40 O3' REMARK 620 2 U C 41 OP1 56.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR C 221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LCK RELATED DB: PDB REMARK 900 4LCK CONTAINS CO-CRYSTALS FULLY TREATED BY CONCURRENT ION EXCHANGE REMARK 900 AND DEHYDRATION REMARK 900 RELATED ID: 4TZP RELATED DB: PDB REMARK 900 4TZP CONTAIN UNTREATED, AS GROWN CO-CRYSTALS OF THE T-BOX TERNARY REMARK 900 COMPLEX REMARK 900 RELATED ID: 4TZV RELATED DB: PDB REMARK 900 4TZV CONTAINS CO-CRYSTALS THAT WAS SUBJECTED TO REMOVAL OF LITHIUM REMARK 900 SULFATE REMARK 900 RELATED ID: 4TZX RELATED DB: PDB REMARK 900 RELATED ID: 4TZY RELATED DB: PDB REMARK 900 RELATED ID: 4TZZ RELATED DB: PDB DBREF 4TZW A 2 82 UNP P46350 RXL7_BACSU 2 82 DBREF 4TZW B 5 79 PDB 4TZW 4TZW 5 79 DBREF 4TZW C 1 102 PDB 4TZW 4TZW 1 102 SEQADV 4TZW GLY A 1 UNP P46350 EXPRESSION TAG SEQRES 1 A 82 GLY SER TYR ASP LYS VAL SER GLN ALA LYS SER ILE ILE SEQRES 2 A 82 ILE GLY THR LYS GLN THR VAL LYS ALA LEU LYS ARG GLY SEQRES 3 A 82 SER VAL LYS GLU VAL VAL VAL ALA LYS ASP ALA ASP PRO SEQRES 4 A 82 ILE LEU THR SER SER VAL VAL SER LEU ALA GLU ASP GLN SEQRES 5 A 82 GLY ILE SER VAL SER MSE VAL GLU SER MSE LYS LYS LEU SEQRES 6 A 82 GLY LYS ALA CYS GLY ILE GLU VAL GLY ALA ALA ALA VAL SEQRES 7 A 82 ALA ILE ILE LEU SEQRES 1 B 75 G A G U A G U U C A G U G SEQRES 2 B 75 G U A G A A C A C C A C C SEQRES 3 B 75 U U G C C A A G G U G G G SEQRES 4 B 75 G G U C G C G G G U U C G SEQRES 5 B 75 A A U C C C G U C U C G G SEQRES 6 B 75 G C G A A A G C C C SEQRES 1 C 102 G G G U G C G A U G A G A SEQRES 2 C 102 A G A A G A G U A U U A A SEQRES 3 C 102 G G A U U U A C U A U G A SEQRES 4 C 102 U U A G C G A C U C U A G SEQRES 5 C 102 G A U A G U G A A A G C U SEQRES 6 C 102 A G A G G A U A G U A A C SEQRES 7 C 102 C U U A A G A A G G C A C SEQRES 8 C 102 U U C G A G C A C C C MODRES 4TZW MSE A 58 MET MODIFIED RESIDUE MODRES 4TZW MSE A 62 MET MODIFIED RESIDUE HET MSE A 58 8 HET MSE A 62 8 HET SR B 101 1 HET SR B 102 1 HET SR B 103 1 HET SR B 104 1 HET SR B 105 1 HET SR B 106 1 HET SR B 107 1 HET SR B 108 1 HET SR B 109 1 HET SR B 110 1 HET SR B 111 1 HET SR B 112 1 HET SR B 113 1 HET SR B 114 1 HET SR B 115 1 HET SR C 201 1 HET SR C 202 1 HET SR C 203 1 HET SR C 204 1 HET SR C 205 1 HET SR C 206 1 HET SR C 207 1 HET SR C 208 1 HET SR C 209 1 HET SR C 210 1 HET SR C 211 1 HET SR C 212 1 HET SR C 213 1 HET SR C 214 1 HET SR C 215 1 HET SR C 216 1 HET SR C 217 1 HET SR C 218 1 HET SR C 219 1 HET SR C 220 1 HET SR C 221 1 HETNAM MSE SELENOMETHIONINE HETNAM SR STRONTIUM ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 4 SR 36(SR 2+) HELIX 1 AA1 TYR A 3 GLN A 8 1 6 HELIX 2 AA2 GLY A 15 LYS A 24 1 10 HELIX 3 AA3 ASP A 38 GLY A 53 1 16 HELIX 4 AA4 SER A 61 CYS A 69 1 9 SHEET 1 AA1 4 ILE A 12 ILE A 14 0 SHEET 2 AA1 4 ALA A 77 ILE A 80 -1 O ALA A 79 N ILE A 13 SHEET 3 AA1 4 GLU A 30 ALA A 34 -1 N VAL A 32 O VAL A 78 SHEET 4 AA1 4 VAL A 56 VAL A 59 1 O VAL A 59 N VAL A 33 LINK C SER A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N VAL A 59 1555 1555 1.34 LINK C SER A 61 N MSE A 62 1555 1555 1.34 LINK C MSE A 62 N LYS A 63 1555 1555 1.33 LINK O6 G B 41 SR SR B 108 1555 1555 2.92 LINK O6 G B 52 SR SR B 111 1555 1555 2.96 LINK O4 U B 54 SR SR B 106 1555 1555 2.98 LINK O2' A B 57 SR SR B 111 1555 1555 2.73 LINK N1 G C 7 SR SR C 206 1555 1555 2.54 LINK O6 G C 18 SR SR C 209 1555 1555 2.59 LINK OP2 A C 39 SR SR C 221 1555 7545 2.75 LINK O3' U C 40 SR SR C 219 1555 1555 2.60 LINK OP1 U C 41 SR SR C 219 1555 1555 2.59 LINK O6 G C 43 SR SR C 201 1555 1555 2.69 LINK O2' U C 50 SR SR C 208 1555 1555 2.67 LINK N7 G C 97 SR SR C 206 1555 1555 2.69 LINK O3' C C 102 SR SR C 221 1555 1555 2.42 LINK O2' C C 102 SR SR C 221 1555 1555 2.94 SITE 1 AC1 2 G B 43 SR B 112 SITE 1 AC2 2 G B 50 G B 51 SITE 1 AC3 1 U B 54 SITE 1 AC4 2 G B 41 G B 42 SITE 1 AC5 2 U B 8 A B 9 SITE 1 AC6 2 G B 52 A B 57 SITE 1 AC7 2 G B 44 SR B 104 SITE 1 AC8 1 G B 33 SITE 1 AC9 1 A B 37 SITE 1 AD1 1 G C 43 SITE 1 AD2 4 A C 39 U C 40 C C 102 SR C 221 SITE 1 AD3 2 G C 59 SR C 214 SITE 1 AD4 2 G C 52 G C 53 SITE 1 AD5 1 A C 11 SITE 1 AD6 2 G C 7 G C 97 SITE 1 AD7 1 U C 50 SITE 1 AD8 2 A C 17 G C 18 SITE 1 AD9 2 A C 8 U C 9 SITE 1 AE1 1 G C 15 SITE 1 AE2 2 G C 59 SR C 203 SITE 1 AE3 1 C C 79 SITE 1 AE4 2 U C 40 U C 41 SITE 1 AE5 3 A C 16 A C 17 A C 90 SITE 1 AE6 3 A C 39 C C 102 SR C 202 CRYST1 75.316 75.316 268.942 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003718 0.00000