HEADER OXIDOREDUCTASE 11-JUL-14 4U0J TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ENOYL REDUCTASE (INHA) TITLE 2 COMPLEXED WITH 1-CYCLOHEXYL-5-OXO-N-PHENYLPYRROLIDINE-3-CARBOXAMIDE, TITLE 3 REFINED WITH NEW LIGAND RESTRAINTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NADH-DEPENDENT ENOYL-ACP REDUCTASE; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: INHA, RV1484, MTCY277.05; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS OXIDOREDUCTASE, PYRROLIDINE CARBOXAMIDE EXPDTA X-RAY DIFFRACTION AUTHOR X.HE,A.ALIAN,R.M.STROUD,P.R.ORTIZ DE MONTELLANO REVDAT 4 27-DEC-23 4U0J 1 REMARK REVDAT 3 25-DEC-19 4U0J 1 REMARK REVDAT 2 20-SEP-17 4U0J 1 SOURCE JRNL REMARK REVDAT 1 30-JUL-14 4U0J 0 SPRSDE 30-JUL-14 4U0J 2H7I JRNL AUTH X.HE,A.ALIAN,R.M.STROUD,P.R.ORTIZ DE MONTELLANO JRNL TITL PYRROLIDINE CARBOXAMIDES AS A NOVEL CLASS OF INHIBITORS OF JRNL TITL 2 ENOYL ACYL CARRIER PROTEIN REDUCTASE FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS JRNL REF J. MED. CHEM. 6308 2006 JRNL REFN ISSN 0022-2623 JRNL PMID 17034137 JRNL DOI 10.1021/JM060715Y REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 46801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0476 - 5.0324 1.00 2999 178 0.1667 0.1690 REMARK 3 2 5.0324 - 3.9948 1.00 3010 162 0.1210 0.1358 REMARK 3 3 3.9948 - 3.4899 1.00 2990 152 0.1318 0.1209 REMARK 3 4 3.4899 - 3.1709 1.00 3037 141 0.1457 0.1708 REMARK 3 5 3.1709 - 2.9436 0.99 2966 185 0.1368 0.1505 REMARK 3 6 2.9436 - 2.7701 0.99 2949 200 0.1394 0.1782 REMARK 3 7 2.7701 - 2.6314 0.99 2984 152 0.1460 0.1614 REMARK 3 8 2.6314 - 2.5168 0.99 2980 169 0.1453 0.1850 REMARK 3 9 2.5168 - 2.4199 0.99 2975 176 0.1433 0.1558 REMARK 3 10 2.4199 - 2.3364 0.99 2949 181 0.1392 0.1619 REMARK 3 11 2.3364 - 2.2634 0.99 2968 163 0.1383 0.1575 REMARK 3 12 2.2634 - 2.1987 0.98 2974 149 0.1437 0.1728 REMARK 3 13 2.1987 - 2.1408 0.98 2957 154 0.1478 0.1759 REMARK 3 14 2.1408 - 2.0885 0.99 2986 142 0.1508 0.1980 REMARK 3 15 2.0885 - 2.0411 0.99 2936 186 0.1567 0.1684 REMARK 3 16 2.0411 - 1.9976 0.98 2957 153 0.1677 0.1876 REMARK 3 17 1.9976 - 1.9577 0.98 2996 133 0.1662 0.1914 REMARK 3 18 1.9577 - 1.9207 0.98 2931 148 0.1708 0.2089 REMARK 3 19 1.9207 - 1.8864 0.98 3006 139 0.1680 0.2153 REMARK 3 20 1.8864 - 1.8544 0.98 2923 166 0.1803 0.2188 REMARK 3 21 1.8544 - 1.8245 0.97 2862 188 0.1836 0.1772 REMARK 3 22 1.8245 - 1.7965 0.92 2778 151 0.1845 0.1880 REMARK 3 23 1.7965 - 1.7700 0.82 2442 137 0.1985 0.1897 REMARK 3 24 1.7700 - 1.7451 0.74 2216 113 0.1913 0.1962 REMARK 3 25 1.7451 - 1.7215 0.68 2089 109 0.1892 0.2166 REMARK 3 26 1.7215 - 1.6992 0.63 1873 97 0.2060 0.2667 REMARK 3 27 1.6992 - 1.6779 0.59 1773 87 0.2233 0.2616 REMARK 3 28 1.6779 - 1.6577 0.56 1685 76 0.2342 0.2848 REMARK 3 29 1.6577 - 1.6384 0.51 1576 62 0.2644 0.2791 REMARK 3 30 1.6384 - 1.6200 0.49 1487 70 0.2769 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2118 REMARK 3 ANGLE : 1.286 2888 REMARK 3 CHIRALITY : 0.052 329 REMARK 3 PLANARITY : 0.007 392 REMARK 3 DIHEDRAL : 13.113 788 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 45.3476 47.8630 -88.2565 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.2310 REMARK 3 T33: 0.1832 T12: -0.0003 REMARK 3 T13: -0.0031 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3266 L22: 0.3223 REMARK 3 L33: 0.4726 L12: -0.0433 REMARK 3 L13: 0.2360 L23: 0.0201 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0256 S13: 0.0485 REMARK 3 S21: 0.0312 S22: -0.0171 S23: -0.0657 REMARK 3 S31: -0.0604 S32: 0.1876 S33: -0.0149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : DOUBLE FLAT, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46805 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 54.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 50MM NA CITRATE PH 6.5, HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.68133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.84067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.68133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.84067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.68133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.84067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.68133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.84067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.77000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.47212 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -187.36267 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 48.77000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 84.47212 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -187.36267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 240 O HOH A 501 1.52 REMARK 500 O HOH A 740 O HOH A 747 1.91 REMARK 500 O HOH A 757 O HOH A 764 1.97 REMARK 500 NZ LYS A 240 O HOH A 501 2.02 REMARK 500 OD1 ASN A 106 O HOH A 738 2.03 REMARK 500 O HOH A 507 O HOH A 536 2.07 REMARK 500 O ILE A 257 O HOH A 502 2.09 REMARK 500 O HOH A 686 O HOH A 729 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 502 10663 1.52 REMARK 500 O HOH A 560 O HOH A 562 11654 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -60.85 69.38 REMARK 500 ALA A 124 -57.89 -125.44 REMARK 500 ALA A 157 -34.19 71.05 REMARK 500 ASN A 159 -117.45 42.55 REMARK 500 ALA A 260 73.74 -106.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 566 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TRJ RELATED DB: PDB REMARK 900 RELATED ID: 4TZK RELATED DB: PDB REMARK 900 RELATED ID: 4TZT RELATED DB: PDB REMARK 900 RELATED ID: 4U0K RELATED DB: PDB DBREF 4U0J A 1 269 UNP P9WGR1 INHA_MYCTU 1 269 SEQRES 1 A 269 MET THR GLY LEU LEU ASP GLY LYS ARG ILE LEU VAL SER SEQRES 2 A 269 GLY ILE ILE THR ASP SER SER ILE ALA PHE HIS ILE ALA SEQRES 3 A 269 ARG VAL ALA GLN GLU GLN GLY ALA GLN LEU VAL LEU THR SEQRES 4 A 269 GLY PHE ASP ARG LEU ARG LEU ILE GLN ARG ILE THR ASP SEQRES 5 A 269 ARG LEU PRO ALA LYS ALA PRO LEU LEU GLU LEU ASP VAL SEQRES 6 A 269 GLN ASN GLU GLU HIS LEU ALA SER LEU ALA GLY ARG VAL SEQRES 7 A 269 THR GLU ALA ILE GLY ALA GLY ASN LYS LEU ASP GLY VAL SEQRES 8 A 269 VAL HIS SER ILE GLY PHE MET PRO GLN THR GLY MET GLY SEQRES 9 A 269 ILE ASN PRO PHE PHE ASP ALA PRO TYR ALA ASP VAL SER SEQRES 10 A 269 LYS GLY ILE HIS ILE SER ALA TYR SER TYR ALA SER MET SEQRES 11 A 269 ALA LYS ALA LEU LEU PRO ILE MET ASN PRO GLY GLY SER SEQRES 12 A 269 ILE VAL GLY MET ASP PHE ASP PRO SER ARG ALA MET PRO SEQRES 13 A 269 ALA TYR ASN TRP MET THR VAL ALA LYS SER ALA LEU GLU SEQRES 14 A 269 SER VAL ASN ARG PHE VAL ALA ARG GLU ALA GLY LYS TYR SEQRES 15 A 269 GLY VAL ARG SER ASN LEU VAL ALA ALA GLY PRO ILE ARG SEQRES 16 A 269 THR LEU ALA MET SER ALA ILE VAL GLY GLY ALA LEU GLY SEQRES 17 A 269 GLU GLU ALA GLY ALA GLN ILE GLN LEU LEU GLU GLU GLY SEQRES 18 A 269 TRP ASP GLN ARG ALA PRO ILE GLY TRP ASN MET LYS ASP SEQRES 19 A 269 ALA THR PRO VAL ALA LYS THR VAL CYS ALA LEU LEU SER SEQRES 20 A 269 ASP TRP LEU PRO ALA THR THR GLY ASP ILE ILE TYR ALA SEQRES 21 A 269 ASP GLY GLY ALA HIS THR GLN LEU LEU HET NAD A 400 70 HET 566 A 401 43 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 566 (3S)-1-CYCLOHEXYL-5-OXO-N-PHENYLPYRROLIDINE-3- HETNAM 2 566 CARBOXAMIDE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 566 C17 H22 N2 O2 FORMUL 4 HOH *287(H2 O) HELIX 1 AA1 SER A 20 GLN A 32 1 13 HELIX 2 AA2 ARG A 43 ASP A 52 1 10 HELIX 3 AA3 ASN A 67 GLY A 83 1 17 HELIX 4 AA4 PRO A 99 MET A 103 5 5 HELIX 5 AA5 PRO A 107 ALA A 111 5 5 HELIX 6 AA6 PRO A 112 ALA A 124 1 13 HELIX 7 AA7 ALA A 124 LEU A 135 1 12 HELIX 8 AA8 TYR A 158 LYS A 181 1 24 HELIX 9 AA9 THR A 196 GLY A 204 1 9 HELIX 10 AB1 GLY A 208 ALA A 226 1 19 HELIX 11 AB2 ALA A 235 SER A 247 1 13 HELIX 12 AB3 GLY A 263 GLN A 267 5 5 SHEET 1 AA1 7 LEU A 60 GLU A 62 0 SHEET 2 AA1 7 GLN A 35 GLY A 40 1 N LEU A 38 O LEU A 61 SHEET 3 AA1 7 ARG A 9 SER A 13 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 AA1 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 AA1 7 ARG A 185 ALA A 191 1 O VAL A 189 N ASP A 148 SHEET 7 AA1 7 ASP A 256 ALA A 260 1 O ILE A 258 N LEU A 188 SITE 1 AC1 33 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC1 33 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC1 33 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC1 33 ILE A 122 MET A 147 ASP A 148 LYS A 165 SITE 5 AC1 33 GLY A 192 PRO A 193 ILE A 194 THR A 196 SITE 6 AC1 33 566 A 401 HOH A 587 HOH A 593 HOH A 594 SITE 7 AC1 33 HOH A 595 HOH A 613 HOH A 623 HOH A 671 SITE 8 AC1 33 HOH A 673 HOH A 674 HOH A 676 HOH A 680 SITE 9 AC1 33 HOH A 681 SITE 1 AC2 9 GLY A 96 MET A 103 PRO A 156 ALA A 157 SITE 2 AC2 9 TYR A 158 MET A 199 ILE A 215 NAD A 400 SITE 3 AC2 9 HOH A 671 CRYST1 97.540 97.540 140.522 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010252 0.005919 0.000000 0.00000 SCALE2 0.000000 0.011838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007116 0.00000