HEADER TRANSFERASE 13-JUL-14 4U0P TITLE THE CRYSTAL STRUCTURE OF LIPOYL SYNTHASE IN COMPLEX WITH S-ADENOSYL TITLE 2 HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOYL SYNTHASE 2; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: LIP-SYN 2,LIPOATE SYNTHASE 2,LIPOIC ACID SYNTHASE 2,SULFUR COMPND 5 INSERTION PROTEIN LIPA2; COMPND 6 EC: 2.8.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: LIPA2, TLL0574; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MH003 KEYWDS THIOTRANSFERASE, TIM BARREL, FES CLUSTER, RADICAL SAM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HARMER,M.J.HISCOX,J.SANDY,P.C.DINIS,P.L.ROACH REVDAT 5 08-MAY-24 4U0P 1 REMARK REVDAT 4 30-AUG-17 4U0P 1 REMARK LINK SITE ATOM REVDAT 3 10-DEC-14 4U0P 1 REVDAT 2 05-NOV-14 4U0P 1 JRNL REVDAT 1 20-AUG-14 4U0P 0 JRNL AUTH J.E.HARMER,M.J.HISCOX,P.C.DINIS,S.J.FOX,A.ILIOPOULOS, JRNL AUTH 2 J.E.HUSSEY,J.SANDY,F.T.VAN BEEK,J.W.ESSEX,P.L.ROACH JRNL TITL STRUCTURES OF LIPOYL SYNTHASE REVEAL A COMPACT ACTIVE SITE JRNL TITL 2 FOR CONTROLLING SEQUENTIAL SULFUR INSERTION REACTIONS. JRNL REF BIOCHEM.J. V. 464 123 2014 JRNL REFN ESSN 1470-8728 JRNL PMID 25100160 JRNL DOI 10.1042/BJ20140895 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9053 - 4.0898 1.00 2772 118 0.1518 0.1685 REMARK 3 2 4.0898 - 3.2465 1.00 2618 169 0.1757 0.2005 REMARK 3 3 3.2465 - 2.8362 1.00 2595 154 0.1946 0.2076 REMARK 3 4 2.8362 - 2.5769 1.00 2599 131 0.1927 0.2250 REMARK 3 5 2.5769 - 2.3922 1.00 2605 112 0.1829 0.2354 REMARK 3 6 2.3922 - 2.2512 1.00 2613 116 0.1782 0.2158 REMARK 3 7 2.2512 - 2.1385 1.00 2539 161 0.1825 0.2170 REMARK 3 8 2.1385 - 2.0454 1.00 2514 167 0.1801 0.2321 REMARK 3 9 2.0454 - 1.9666 1.00 2588 119 0.1765 0.2019 REMARK 3 10 1.9666 - 1.8988 0.99 2549 131 0.1918 0.2289 REMARK 3 11 1.8988 - 1.8394 1.00 2566 135 0.1889 0.2265 REMARK 3 12 1.8394 - 1.7868 0.99 2530 125 0.1989 0.2565 REMARK 3 13 1.7868 - 1.7398 0.99 2526 145 0.2013 0.2419 REMARK 3 14 1.7398 - 1.6973 0.99 2522 138 0.2265 0.2400 REMARK 3 15 1.6973 - 1.6587 0.99 2497 142 0.2514 0.2773 REMARK 3 16 1.6587 - 1.6234 0.99 2564 120 0.2852 0.3458 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 2248 REMARK 3 ANGLE : 2.190 3068 REMARK 3 CHIRALITY : 0.077 344 REMARK 3 PLANARITY : 0.009 397 REMARK 3 DIHEDRAL : 14.620 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA, XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 43.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE, 15% POLYETHYLENE GLYCOL REMARK 280 20,000, 3% DEXTRAN SULFATE SODIUM SALT, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.73500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.73500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 17 CB CG CD CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 27 CG CD1 CD2 REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE1 SF4 B 301 N SAH B 303 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 140 170.85 -59.65 REMARK 500 GLU B 171 -45.45 76.24 REMARK 500 ASN B 200 97.23 -165.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAH B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 SF4 B 302 S1 118.0 REMARK 620 3 SF4 B 302 S3 112.7 100.8 REMARK 620 4 SF4 B 302 S4 115.7 105.8 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 42 SG REMARK 620 2 SF4 B 302 S1 119.6 REMARK 620 3 SF4 B 302 S2 115.2 100.2 REMARK 620 4 SF4 B 302 S4 111.0 105.0 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 48 SG REMARK 620 2 SF4 B 302 S2 113.9 REMARK 620 3 SF4 B 302 S3 120.6 105.6 REMARK 620 4 SF4 B 302 S4 111.2 102.8 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 SF4 B 301 S1 122.2 REMARK 620 3 SF4 B 301 S2 111.3 102.7 REMARK 620 4 SF4 B 301 S3 116.5 100.3 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 67 SG REMARK 620 2 SF4 B 301 S1 113.2 REMARK 620 3 SF4 B 301 S2 122.4 102.9 REMARK 620 4 SF4 B 301 S4 111.8 101.3 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 70 SG REMARK 620 2 SF4 B 301 S1 106.1 REMARK 620 3 SF4 B 301 S3 128.3 101.7 REMARK 620 4 SF4 B 301 S4 112.7 100.8 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 283 OG REMARK 620 2 SF4 B 302 S1 116.7 REMARK 620 3 SF4 B 302 S2 121.0 101.7 REMARK 620 4 SF4 B 302 S3 106.6 101.2 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 283 OG REMARK 620 2 HOH B 558 O 132.5 REMARK 620 3 HOH B 563 O 163.7 55.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAH B 303 OXT REMARK 620 2 SF4 B 301 S2 87.0 REMARK 620 3 SF4 B 301 S3 124.6 100.5 REMARK 620 4 SF4 B 301 S4 132.7 100.5 100.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 DBREF 4U0P B 1 290 UNP Q8DLC2 LIPA2_THEEB 1 290 SEQADV 4U0P HIS B 291 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0P HIS B 292 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0P HIS B 293 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0P HIS B 294 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0P HIS B 295 UNP Q8DLC2 EXPRESSION TAG SEQADV 4U0P HIS B 296 UNP Q8DLC2 EXPRESSION TAG SEQRES 1 B 296 MET ALA LEU SER ARG PRO LEU PRO SER TRP LEU ARG LYS SEQRES 2 B 296 PRO LEU GLY LYS ALA SER GLU ILE SER THR VAL GLN ARG SEQRES 3 B 296 LEU VAL ARG GLN TYR GLY ILE HIS THR ILE CYS GLU GLU SEQRES 4 B 296 GLY ARG CYS PRO ASN ARG GLY GLU CYS TYR GLY GLN LYS SEQRES 5 B 296 THR ALA THR PHE LEU LEU LEU GLY PRO THR CYS THR ARG SEQRES 6 B 296 ALA CYS ALA PHE CYS GLN VAL GLU LYS GLY HIS ALA PRO SEQRES 7 B 296 ALA ALA VAL ASP PRO GLU GLU PRO THR LYS ILE ALA ALA SEQRES 8 B 296 ALA VAL ALA THR LEU GLY LEU ARG TYR VAL VAL LEU THR SEQRES 9 B 296 SER VAL ALA ARG ASP ASP LEU PRO ASP GLN GLY ALA GLY SEQRES 10 B 296 GLN PHE VAL ALA THR MET ALA ALA ILE ARG GLN ARG CYS SEQRES 11 B 296 PRO GLY THR GLU ILE GLU VAL LEU SER PRO ASP PHE ARG SEQRES 12 B 296 MET ASP ARG GLY ARG LEU SER GLN ARG ASP CYS ILE ALA SEQRES 13 B 296 GLN ILE VAL ALA ALA GLN PRO ALA CYS TYR ASN HIS ASN SEQRES 14 B 296 LEU GLU THR VAL ARG ARG LEU GLN GLY PRO VAL ARG ARG SEQRES 15 B 296 GLY ALA THR TYR GLU SER SER LEU ARG VAL LEU ALA THR SEQRES 16 B 296 VAL LYS GLU LEU ASN PRO ASP ILE PRO THR LYS SER GLY SEQRES 17 B 296 LEU MET LEU GLY LEU GLY GLU THR GLU ALA GLU ILE ILE SEQRES 18 B 296 GLU THR LEU LYS ASP LEU ARG ARG VAL GLY CYS ASP ARG SEQRES 19 B 296 LEU THR LEU GLY GLN TYR LEU PRO PRO SER LEU SER HIS SEQRES 20 B 296 LEU PRO VAL VAL LYS TYR TRP THR PRO GLU GLU PHE ASN SEQRES 21 B 296 THR LEU GLY ASN ILE ALA ARG GLU LEU GLY PHE SER HIS SEQRES 22 B 296 VAL ARG SER GLY PRO LEU VAL ARG SER SER TYR HIS ALA SEQRES 23 B 296 ALA GLU GLY GLY HIS HIS HIS HIS HIS HIS HET SF4 B 301 8 HET SF4 B 302 8 HET SAH B 303 16 HET NA B 304 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM NA SODIUM ION FORMUL 2 SF4 2(FE4 S4) FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 NA NA 1+ FORMUL 6 HOH *172(H2 O) HELIX 1 AA1 PRO B 8 LYS B 17 1 10 HELIX 2 AA2 ILE B 21 TYR B 31 1 11 HELIX 3 AA3 THR B 35 GLY B 40 1 6 HELIX 4 AA4 ASN B 44 GLN B 51 1 8 HELIX 5 AA5 GLU B 84 GLY B 97 1 14 HELIX 6 AA6 GLY B 115 CYS B 130 1 16 HELIX 7 AA7 SER B 150 ALA B 161 1 12 HELIX 8 AA8 VAL B 173 ARG B 175 5 3 HELIX 9 AA9 LEU B 176 ARG B 181 1 6 HELIX 10 AB1 THR B 185 ASN B 200 1 16 HELIX 11 AB2 THR B 216 VAL B 230 1 15 HELIX 12 AB3 THR B 255 LEU B 269 1 15 SHEET 1 AA1 7 THR B 53 LEU B 58 0 SHEET 2 AA1 7 TYR B 100 SER B 105 1 O THR B 104 N LEU B 58 SHEET 3 AA1 7 GLU B 134 LEU B 138 1 O LEU B 138 N LEU B 103 SHEET 4 AA1 7 CYS B 165 ASN B 167 1 O ASN B 167 N VAL B 137 SHEET 5 AA1 7 THR B 205 LEU B 211 1 O LYS B 206 N TYR B 166 SHEET 6 AA1 7 ARG B 234 GLN B 239 1 O GLY B 238 N LEU B 211 SHEET 7 AA1 7 HIS B 273 SER B 276 1 O HIS B 273 N LEU B 235 SHEET 1 AA2 2 THR B 62 CYS B 63 0 SHEET 2 AA2 2 GLU B 73 LYS B 74 1 O GLU B 73 N CYS B 63 LINK SG CYS B 37 FE2 SF4 B 302 1555 1555 2.29 LINK SG CYS B 42 FE3 SF4 B 302 1555 1555 2.27 LINK SG CYS B 48 FE1 SF4 B 302 1555 1555 2.30 LINK SG CYS B 63 FE4 SF4 B 301 1555 1555 2.30 LINK SG CYS B 67 FE3 SF4 B 301 1555 1555 2.28 LINK SG CYS B 70 FE2 SF4 B 301 1555 1555 2.33 LINK OG SER B 283 FE4 SF4 B 302 1555 1555 1.99 LINK OG SER B 283 NA NA B 304 1555 1555 2.41 LINK FE1 SF4 B 301 OXT SAH B 303 1555 1555 2.32 LINK NA NA B 304 O HOH B 558 1555 1555 2.58 LINK NA NA B 304 O HOH B 563 1555 1555 2.42 CISPEP 1 GLY B 60 PRO B 61 0 10.32 SITE 1 AC1 5 CYS B 63 CYS B 67 CYS B 70 ALA B 107 SITE 2 AC1 5 SAH B 303 SITE 1 AC2 7 CYS B 37 CYS B 42 ASN B 44 CYS B 48 SITE 2 AC2 7 THR B 55 SER B 283 NA B 304 SITE 1 AC3 3 THR B 104 SF4 B 301 HOH B 527 SITE 1 AC4 4 SER B 283 SF4 B 302 HOH B 563 HOH B 558 CRYST1 71.090 161.130 59.470 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016815 0.00000