data_4U0Y # _entry.id 4U0Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U0Y pdb_00004u0y 10.2210/pdb4u0y/pdb WWPDB D_1000202632 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U0Y _pdbx_database_status.recvd_initial_deposition_date 2014-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fillenberg, S.B.' 1 'Muller, Y.A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 1283 _citation.page_last 1296 _citation.title 'Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gku1374 _citation.pdbx_database_id_PubMed 25564531 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fillenberg, S.B.' 1 ? primary 'Grau, F.C.' 2 ? primary 'Seidel, G.' 3 ? primary 'Muller, Y.A.' 4 ? # _cell.length_a 48.554 _cell.length_b 48.554 _cell.length_c 153.941 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4U0Y _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HTH-type transcriptional repressor YvoA' 8965.283 4 ? ? 'UNP residues 1-75' 'Truncated form of YvoA; comprises only the DNA-binding domain (residues 1-75)' 2 polymer syn ;DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*AP*CP*T)-3') ; 4584.984 2 ? ? ? ;15mer palindromic dsDNA construct; derived from the consensus sequence of the two native non-palindromic dre-site sequences upstream of nagAB-yvoA and nagP ; 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 287 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSHMNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS GSHMNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS A,B,C,D ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DG)(DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC)(DC)(DA)(DC)(DT)' GTGGTCTAGACCACT E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASN n 1 6 ILE n 1 7 ASN n 1 8 LYS n 1 9 GLN n 1 10 SER n 1 11 PRO n 1 12 ILE n 1 13 PRO n 1 14 ILE n 1 15 TYR n 1 16 TYR n 1 17 GLN n 1 18 ILE n 1 19 MET n 1 20 GLU n 1 21 GLN n 1 22 LEU n 1 23 LYS n 1 24 THR n 1 25 GLN n 1 26 ILE n 1 27 LYS n 1 28 ASN n 1 29 GLY n 1 30 GLU n 1 31 LEU n 1 32 GLN n 1 33 PRO n 1 34 ASP n 1 35 MET n 1 36 PRO n 1 37 LEU n 1 38 PRO n 1 39 SER n 1 40 GLU n 1 41 ARG n 1 42 GLU n 1 43 TYR n 1 44 ALA n 1 45 GLU n 1 46 GLN n 1 47 PHE n 1 48 GLY n 1 49 ILE n 1 50 SER n 1 51 ARG n 1 52 MET n 1 53 THR n 1 54 VAL n 1 55 ARG n 1 56 GLN n 1 57 ALA n 1 58 LEU n 1 59 SER n 1 60 ASN n 1 61 LEU n 1 62 VAL n 1 63 ASN n 1 64 GLU n 1 65 GLY n 1 66 LEU n 1 67 LEU n 1 68 TYR n 1 69 ARG n 1 70 LEU n 1 71 LYS n 1 72 GLY n 1 73 ARG n 1 74 GLY n 1 75 THR n 1 76 PHE n 1 77 VAL n 1 78 SER n 2 1 DG n 2 2 DT n 2 3 DG n 2 4 DG n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DC n 2 13 DA n 2 14 DC n 2 15 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 78 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'yvoA, BSU35030' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis subsp. subtilis str. 168' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis subsp. subtilis str. 168' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 224308 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.db_code _struct_ref.db_name _struct_ref.details _struct_ref.entity_id _struct_ref.id _struct_ref.seq_align _struct_ref.seq_dif _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_align_end _struct_ref.pdbx_db_isoform YVOA_BACSU UNP ? 1 1 ? ? O34817 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS 1 ? ? 4U0Y PDB ? 2 2 ? ? 4U0Y ? 1 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U0Y A 4 ? 78 ? O34817 1 ? 75 ? 1 75 2 1 4U0Y B 4 ? 78 ? O34817 1 ? 75 ? 1 75 3 1 4U0Y C 4 ? 78 ? O34817 1 ? 75 ? 1 75 4 1 4U0Y D 4 ? 78 ? O34817 1 ? 75 ? 1 75 5 2 4U0Y E 1 ? 15 ? 4U0Y 1 ? 15 ? 1 15 6 2 4U0Y F 1 ? 15 ? 4U0Y 1 ? 15 ? 1 15 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4U0Y GLY A 1 ? UNP O34817 ? ? 'expression tag' -2 1 1 4U0Y SER A 2 ? UNP O34817 ? ? 'expression tag' -1 2 1 4U0Y HIS A 3 ? UNP O34817 ? ? 'expression tag' 0 3 2 4U0Y GLY B 1 ? UNP O34817 ? ? 'expression tag' -2 4 2 4U0Y SER B 2 ? UNP O34817 ? ? 'expression tag' -1 5 2 4U0Y HIS B 3 ? UNP O34817 ? ? 'expression tag' 0 6 3 4U0Y GLY C 1 ? UNP O34817 ? ? 'expression tag' -2 7 3 4U0Y SER C 2 ? UNP O34817 ? ? 'expression tag' -1 8 3 4U0Y HIS C 3 ? UNP O34817 ? ? 'expression tag' 0 9 4 4U0Y GLY D 1 ? UNP O34817 ? ? 'expression tag' -2 10 4 4U0Y SER D 2 ? UNP O34817 ? ? 'expression tag' -1 11 4 4U0Y HIS D 3 ? UNP O34817 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U0Y _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;50 mM sodium cacodylate, 200 mM sodium citrate, 10 mM MgCl2, 5 % (v/v) isopropanol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2010-10-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91841 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 25.860 _reflns.entry_id 4U0Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.91 _reflns.d_resolution_low 32.52 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31230 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.8 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.61 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.91 _reflns_shell.d_res_low 1.98 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 98.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.87 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 99.380 _refine.B_iso_mean 29.8537 _refine.B_iso_min 13.230 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U0Y _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.91 _refine.ls_d_res_low 32.52 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31190 _refine.ls_number_reflns_R_free 1558 _refine.ls_number_reflns_R_work 29632 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6700 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1809 _refine.ls_R_factor_R_free 0.2294 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1783 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.450 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.950 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'DNA-binding domain of PDB entry 2wv0' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.1400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8245 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2420 _refine_hist.pdbx_number_atoms_nucleic_acid 614 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 287 _refine_hist.number_atoms_total 3323 _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 32.52 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 3176 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.087 ? 4407 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 482 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 472 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.676 ? 1303 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 1.9140 1.9758 2799 . 139 2660 98.0000 . . . 0.3129 . 0.2671 . . . . . . 11 . 'X-RAY DIFFRACTION' 1.9758 2.0464 2859 . 143 2716 100.0000 . . . 0.2900 . 0.2338 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.0464 2.1283 2814 . 140 2674 100.0000 . . . 0.2585 . 0.2193 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.1283 2.2252 2855 . 143 2712 100.0000 . . . 0.2877 . 0.2059 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.2252 2.3425 2836 . 141 2695 100.0000 . . . 0.2816 . 0.2055 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.3425 2.4892 2826 . 142 2684 100.0000 . . . 0.2341 . 0.1950 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.4892 2.6813 2884 . 144 2740 100.0000 . . . 0.2387 . 0.1977 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.6813 2.9510 2797 . 140 2657 100.0000 . . . 0.2567 . 0.1916 . . . . . . 11 . 'X-RAY DIFFRACTION' 2.9510 3.3776 2850 . 142 2708 100.0000 . . . 0.2488 . 0.1698 . . . . . . 11 . 'X-RAY DIFFRACTION' 3.3776 4.2539 2827 . 141 2686 100.0000 . . . 0.1951 . 0.1482 . . . . . . 11 . 'X-RAY DIFFRACTION' 4.2539 32.5286 2843 . 143 2700 100.0000 . . . 0.1788 . 0.1476 . . . . . . 11 . # _struct.entry_id 4U0Y _struct.title 'Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U0Y _struct_keywords.text ;Transcription, Repressor, Bacterial transcription regulation, Transcription factor, GntR/HutC family, Winged helix-turn-helix motif, N-acetylglucosamine utilization, DNA-binding, Operator-binding ; _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 13 ? ASN A 28 ? PRO A 10 ASN A 25 1 ? 16 HELX_P HELX_P2 AA2 SER A 39 ? GLY A 48 ? SER A 36 GLY A 45 1 ? 10 HELX_P HELX_P3 AA3 SER A 50 ? GLU A 64 ? SER A 47 GLU A 61 1 ? 15 HELX_P HELX_P4 AA4 PRO B 13 ? GLY B 29 ? PRO B 10 GLY B 26 1 ? 17 HELX_P HELX_P5 AA5 SER B 39 ? GLY B 48 ? SER B 36 GLY B 45 1 ? 10 HELX_P HELX_P6 AA6 SER B 50 ? GLU B 64 ? SER B 47 GLU B 61 1 ? 15 HELX_P HELX_P7 AA7 PRO C 13 ? ASN C 28 ? PRO C 10 ASN C 25 1 ? 16 HELX_P HELX_P8 AA8 SER C 39 ? GLY C 48 ? SER C 36 GLY C 45 1 ? 10 HELX_P HELX_P9 AA9 SER C 50 ? GLU C 64 ? SER C 47 GLU C 61 1 ? 15 HELX_P HELX_P10 AB1 PRO D 13 ? ASN D 28 ? PRO D 10 ASN D 25 1 ? 16 HELX_P HELX_P11 AB2 SER D 39 ? GLY D 48 ? SER D 36 GLY D 45 1 ? 10 HELX_P HELX_P12 AB3 SER D 50 ? GLU D 64 ? SER D 47 GLU D 61 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 14 N3 ? ? E DG 1 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 14 O2 ? ? E DG 1 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 14 N4 ? ? E DG 1 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 13 N1 ? ? E DT 2 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 13 N6 ? ? E DT 2 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? E DG 3 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 3 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E DG 3 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 3 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E DG 3 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 3 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 11 N3 ? ? E DG 4 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 11 O2 ? ? E DG 4 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 11 N4 ? ? E DG 4 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 10 N1 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 10 N6 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 9 N1 ? ? E DC 6 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 9 O6 ? ? E DC 6 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 9 N2 ? ? E DC 6 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 8 N1 ? ? E DT 7 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 8 N6 ? ? E DT 7 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? E DA 8 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 8 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? E DA 8 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 8 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? E DG 9 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 9 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? E DG 9 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 9 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? E DG 9 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 9 F DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 11 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 11 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 11 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E DC 12 N3 ? ? ? 1_555 F DG 3 N1 ? ? E DC 12 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E DC 12 N4 ? ? ? 1_555 F DG 3 O6 ? ? E DC 12 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E DC 12 O2 ? ? ? 1_555 F DG 3 N2 ? ? E DC 12 F DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 13 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 13 F DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 13 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 13 F DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DC 14 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 14 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DC 14 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 14 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DC 14 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 14 F DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 67 ? LEU A 70 ? LEU A 64 LEU A 67 AA1 2 GLY A 74 ? VAL A 77 ? GLY A 71 VAL A 74 AA2 1 LEU B 67 ? LEU B 70 ? LEU B 64 LEU B 67 AA2 2 GLY B 74 ? VAL B 77 ? GLY B 71 VAL B 74 AA3 1 LEU C 67 ? LEU C 70 ? LEU C 64 LEU C 67 AA3 2 GLY C 74 ? VAL C 77 ? GLY C 71 VAL C 74 AA4 1 LEU D 67 ? LEU D 70 ? LEU D 64 LEU D 67 AA4 2 GLY D 74 ? VAL D 77 ? GLY D 71 VAL D 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 68 ? N TYR A 65 O PHE A 76 ? O PHE A 73 AA2 1 2 N TYR B 68 ? N TYR B 65 O PHE B 76 ? O PHE B 73 AA3 1 2 N TYR C 68 ? N TYR C 65 O PHE C 76 ? O PHE C 73 AA4 1 2 N TYR D 68 ? N TYR D 65 O PHE D 76 ? O PHE D 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 101 ? 4 'binding site for residue CL B 101' AC2 Software C CL 101 ? 4 'binding site for residue CL C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 51 ? ARG A 48 . ? 1_555 ? 2 AC1 4 ARG B 41 ? ARG B 38 . ? 1_555 ? 3 AC1 4 DC E 11 ? DC E 11 . ? 1_555 ? 4 AC1 4 HOH M . ? HOH E 131 . ? 1_555 ? 5 AC2 4 ARG C 51 ? ARG C 48 . ? 1_555 ? 6 AC2 4 ARG D 41 ? ARG D 38 . ? 1_555 ? 7 AC2 4 DC F 11 ? DC F 11 . ? 1_555 ? 8 AC2 4 HOH N . ? HOH F 129 . ? 1_555 ? # _atom_sites.entry_id 4U0Y _atom_sites.fract_transf_matrix[1][1] 0.020596 _atom_sites.fract_transf_matrix[1][2] 0.011891 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023782 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006496 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ASN 5 2 2 ASN ASN A . n A 1 6 ILE 6 3 3 ILE ILE A . n A 1 7 ASN 7 4 4 ASN ASN A . n A 1 8 LYS 8 5 5 LYS LYS A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 PRO 11 8 8 PRO PRO A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 PRO 13 10 10 PRO PRO A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 TYR 15 12 12 TYR TYR A . n A 1 16 TYR 16 13 13 TYR TYR A . n A 1 17 GLN 17 14 14 GLN GLN A . n A 1 18 ILE 18 15 15 ILE ILE A . n A 1 19 MET 19 16 16 MET MET A . n A 1 20 GLU 20 17 17 GLU GLU A . n A 1 21 GLN 21 18 18 GLN GLN A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 THR 24 21 21 THR THR A . n A 1 25 GLN 25 22 22 GLN GLN A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 ASN 28 25 25 ASN ASN A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 GLN 32 29 29 GLN GLN A . n A 1 33 PRO 33 30 30 PRO PRO A . n A 1 34 ASP 34 31 31 ASP ASP A . n A 1 35 MET 35 32 32 MET MET A . n A 1 36 PRO 36 33 33 PRO PRO A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 PRO 38 35 35 PRO PRO A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 ARG 41 38 38 ARG ARG A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 TYR 43 40 40 TYR TYR A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 GLN 46 43 43 GLN GLN A . n A 1 47 PHE 47 44 44 PHE PHE A . n A 1 48 GLY 48 45 45 GLY GLY A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 ARG 51 48 48 ARG ARG A . n A 1 52 MET 52 49 49 MET MET A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 GLN 56 53 53 GLN GLN A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 ASN 60 57 57 ASN ASN A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 VAL 62 59 59 VAL VAL A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 GLY 65 62 62 GLY GLY A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 TYR 68 65 65 TYR TYR A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 LYS 71 68 68 LYS LYS A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 VAL 77 74 74 VAL VAL A . n A 1 78 SER 78 75 75 SER SER A . n B 1 1 GLY 1 -2 ? ? ? B . n B 1 2 SER 2 -1 ? ? ? B . n B 1 3 HIS 3 0 ? ? ? B . n B 1 4 MET 4 1 1 MET MET B . n B 1 5 ASN 5 2 2 ASN ASN B . n B 1 6 ILE 6 3 3 ILE ILE B . n B 1 7 ASN 7 4 4 ASN ASN B . n B 1 8 LYS 8 5 5 LYS LYS B . n B 1 9 GLN 9 6 6 GLN GLN B . n B 1 10 SER 10 7 7 SER SER B . n B 1 11 PRO 11 8 8 PRO PRO B . n B 1 12 ILE 12 9 9 ILE ILE B . n B 1 13 PRO 13 10 10 PRO PRO B . n B 1 14 ILE 14 11 11 ILE ILE B . n B 1 15 TYR 15 12 12 TYR TYR B . n B 1 16 TYR 16 13 13 TYR TYR B . n B 1 17 GLN 17 14 14 GLN GLN B . n B 1 18 ILE 18 15 15 ILE ILE B . n B 1 19 MET 19 16 16 MET MET B . n B 1 20 GLU 20 17 17 GLU GLU B . n B 1 21 GLN 21 18 18 GLN GLN B . n B 1 22 LEU 22 19 19 LEU LEU B . n B 1 23 LYS 23 20 20 LYS LYS B . n B 1 24 THR 24 21 21 THR THR B . n B 1 25 GLN 25 22 22 GLN GLN B . n B 1 26 ILE 26 23 23 ILE ILE B . n B 1 27 LYS 27 24 24 LYS LYS B . n B 1 28 ASN 28 25 25 ASN ASN B . n B 1 29 GLY 29 26 26 GLY GLY B . n B 1 30 GLU 30 27 27 GLU GLU B . n B 1 31 LEU 31 28 28 LEU LEU B . n B 1 32 GLN 32 29 29 GLN GLN B . n B 1 33 PRO 33 30 30 PRO PRO B . n B 1 34 ASP 34 31 31 ASP ASP B . n B 1 35 MET 35 32 32 MET MET B . n B 1 36 PRO 36 33 33 PRO PRO B . n B 1 37 LEU 37 34 34 LEU LEU B . n B 1 38 PRO 38 35 35 PRO PRO B . n B 1 39 SER 39 36 36 SER SER B . n B 1 40 GLU 40 37 37 GLU GLU B . n B 1 41 ARG 41 38 38 ARG ARG B . n B 1 42 GLU 42 39 39 GLU GLU B . n B 1 43 TYR 43 40 40 TYR TYR B . n B 1 44 ALA 44 41 41 ALA ALA B . n B 1 45 GLU 45 42 42 GLU GLU B . n B 1 46 GLN 46 43 43 GLN GLN B . n B 1 47 PHE 47 44 44 PHE PHE B . n B 1 48 GLY 48 45 45 GLY GLY B . n B 1 49 ILE 49 46 46 ILE ILE B . n B 1 50 SER 50 47 47 SER SER B . n B 1 51 ARG 51 48 48 ARG ARG B . n B 1 52 MET 52 49 49 MET MET B . n B 1 53 THR 53 50 50 THR THR B . n B 1 54 VAL 54 51 51 VAL VAL B . n B 1 55 ARG 55 52 52 ARG ARG B . n B 1 56 GLN 56 53 53 GLN GLN B . n B 1 57 ALA 57 54 54 ALA ALA B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 SER 59 56 56 SER SER B . n B 1 60 ASN 60 57 57 ASN ASN B . n B 1 61 LEU 61 58 58 LEU LEU B . n B 1 62 VAL 62 59 59 VAL VAL B . n B 1 63 ASN 63 60 60 ASN ASN B . n B 1 64 GLU 64 61 61 GLU GLU B . n B 1 65 GLY 65 62 62 GLY GLY B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 LEU 67 64 64 LEU LEU B . n B 1 68 TYR 68 65 65 TYR TYR B . n B 1 69 ARG 69 66 66 ARG ARG B . n B 1 70 LEU 70 67 67 LEU LEU B . n B 1 71 LYS 71 68 68 LYS LYS B . n B 1 72 GLY 72 69 69 GLY GLY B . n B 1 73 ARG 73 70 70 ARG ARG B . n B 1 74 GLY 74 71 71 GLY GLY B . n B 1 75 THR 75 72 72 THR THR B . n B 1 76 PHE 76 73 73 PHE PHE B . n B 1 77 VAL 77 74 74 VAL VAL B . n B 1 78 SER 78 75 75 SER SER B . n C 1 1 GLY 1 -2 ? ? ? C . n C 1 2 SER 2 -1 ? ? ? C . n C 1 3 HIS 3 0 ? ? ? C . n C 1 4 MET 4 1 1 MET MET C . n C 1 5 ASN 5 2 2 ASN ASN C . n C 1 6 ILE 6 3 3 ILE ILE C . n C 1 7 ASN 7 4 4 ASN ASN C . n C 1 8 LYS 8 5 5 LYS LYS C . n C 1 9 GLN 9 6 6 GLN GLN C . n C 1 10 SER 10 7 7 SER SER C . n C 1 11 PRO 11 8 8 PRO PRO C . n C 1 12 ILE 12 9 9 ILE ILE C . n C 1 13 PRO 13 10 10 PRO PRO C . n C 1 14 ILE 14 11 11 ILE ILE C . n C 1 15 TYR 15 12 12 TYR TYR C . n C 1 16 TYR 16 13 13 TYR TYR C . n C 1 17 GLN 17 14 14 GLN GLN C . n C 1 18 ILE 18 15 15 ILE ILE C . n C 1 19 MET 19 16 16 MET MET C . n C 1 20 GLU 20 17 17 GLU GLU C . n C 1 21 GLN 21 18 18 GLN GLN C . n C 1 22 LEU 22 19 19 LEU LEU C . n C 1 23 LYS 23 20 20 LYS LYS C . n C 1 24 THR 24 21 21 THR THR C . n C 1 25 GLN 25 22 22 GLN GLN C . n C 1 26 ILE 26 23 23 ILE ILE C . n C 1 27 LYS 27 24 24 LYS LYS C . n C 1 28 ASN 28 25 25 ASN ASN C . n C 1 29 GLY 29 26 26 GLY GLY C . n C 1 30 GLU 30 27 27 GLU GLU C . n C 1 31 LEU 31 28 28 LEU LEU C . n C 1 32 GLN 32 29 29 GLN GLN C . n C 1 33 PRO 33 30 30 PRO PRO C . n C 1 34 ASP 34 31 31 ASP ASP C . n C 1 35 MET 35 32 32 MET MET C . n C 1 36 PRO 36 33 33 PRO PRO C . n C 1 37 LEU 37 34 34 LEU LEU C . n C 1 38 PRO 38 35 35 PRO PRO C . n C 1 39 SER 39 36 36 SER SER C . n C 1 40 GLU 40 37 37 GLU GLU C . n C 1 41 ARG 41 38 38 ARG ARG C . n C 1 42 GLU 42 39 39 GLU GLU C . n C 1 43 TYR 43 40 40 TYR TYR C . n C 1 44 ALA 44 41 41 ALA ALA C . n C 1 45 GLU 45 42 42 GLU GLU C . n C 1 46 GLN 46 43 43 GLN GLN C . n C 1 47 PHE 47 44 44 PHE PHE C . n C 1 48 GLY 48 45 45 GLY GLY C . n C 1 49 ILE 49 46 46 ILE ILE C . n C 1 50 SER 50 47 47 SER SER C . n C 1 51 ARG 51 48 48 ARG ARG C . n C 1 52 MET 52 49 49 MET MET C . n C 1 53 THR 53 50 50 THR THR C . n C 1 54 VAL 54 51 51 VAL VAL C . n C 1 55 ARG 55 52 52 ARG ARG C . n C 1 56 GLN 56 53 53 GLN GLN C . n C 1 57 ALA 57 54 54 ALA ALA C . n C 1 58 LEU 58 55 55 LEU LEU C . n C 1 59 SER 59 56 56 SER SER C . n C 1 60 ASN 60 57 57 ASN ASN C . n C 1 61 LEU 61 58 58 LEU LEU C . n C 1 62 VAL 62 59 59 VAL VAL C . n C 1 63 ASN 63 60 60 ASN ASN C . n C 1 64 GLU 64 61 61 GLU GLU C . n C 1 65 GLY 65 62 62 GLY GLY C . n C 1 66 LEU 66 63 63 LEU LEU C . n C 1 67 LEU 67 64 64 LEU LEU C . n C 1 68 TYR 68 65 65 TYR TYR C . n C 1 69 ARG 69 66 66 ARG ARG C . n C 1 70 LEU 70 67 67 LEU LEU C . n C 1 71 LYS 71 68 68 LYS LYS C . n C 1 72 GLY 72 69 69 GLY GLY C . n C 1 73 ARG 73 70 70 ARG ARG C . n C 1 74 GLY 74 71 71 GLY GLY C . n C 1 75 THR 75 72 72 THR THR C . n C 1 76 PHE 76 73 73 PHE PHE C . n C 1 77 VAL 77 74 74 VAL VAL C . n C 1 78 SER 78 75 75 SER SER C . n D 1 1 GLY 1 -2 ? ? ? D . n D 1 2 SER 2 -1 ? ? ? D . n D 1 3 HIS 3 0 ? ? ? D . n D 1 4 MET 4 1 ? ? ? D . n D 1 5 ASN 5 2 2 ASN ASN D . n D 1 6 ILE 6 3 3 ILE ILE D . n D 1 7 ASN 7 4 4 ASN ASN D . n D 1 8 LYS 8 5 5 LYS LYS D . n D 1 9 GLN 9 6 6 GLN GLN D . n D 1 10 SER 10 7 7 SER SER D . n D 1 11 PRO 11 8 8 PRO PRO D . n D 1 12 ILE 12 9 9 ILE ILE D . n D 1 13 PRO 13 10 10 PRO PRO D . n D 1 14 ILE 14 11 11 ILE ILE D . n D 1 15 TYR 15 12 12 TYR TYR D . n D 1 16 TYR 16 13 13 TYR TYR D . n D 1 17 GLN 17 14 14 GLN GLN D . n D 1 18 ILE 18 15 15 ILE ILE D . n D 1 19 MET 19 16 16 MET MET D . n D 1 20 GLU 20 17 17 GLU GLU D . n D 1 21 GLN 21 18 18 GLN GLN D . n D 1 22 LEU 22 19 19 LEU LEU D . n D 1 23 LYS 23 20 20 LYS LYS D . n D 1 24 THR 24 21 21 THR THR D . n D 1 25 GLN 25 22 22 GLN GLN D . n D 1 26 ILE 26 23 23 ILE ILE D . n D 1 27 LYS 27 24 24 LYS LYS D . n D 1 28 ASN 28 25 25 ASN ASN D . n D 1 29 GLY 29 26 26 GLY GLY D . n D 1 30 GLU 30 27 27 GLU GLU D . n D 1 31 LEU 31 28 28 LEU LEU D . n D 1 32 GLN 32 29 29 GLN GLN D . n D 1 33 PRO 33 30 30 PRO PRO D . n D 1 34 ASP 34 31 31 ASP ASP D . n D 1 35 MET 35 32 32 MET MET D . n D 1 36 PRO 36 33 33 PRO PRO D . n D 1 37 LEU 37 34 34 LEU LEU D . n D 1 38 PRO 38 35 35 PRO PRO D . n D 1 39 SER 39 36 36 SER SER D . n D 1 40 GLU 40 37 37 GLU GLU D . n D 1 41 ARG 41 38 38 ARG ARG D . n D 1 42 GLU 42 39 39 GLU GLU D . n D 1 43 TYR 43 40 40 TYR TYR D . n D 1 44 ALA 44 41 41 ALA ALA D . n D 1 45 GLU 45 42 42 GLU GLU D . n D 1 46 GLN 46 43 43 GLN GLN D . n D 1 47 PHE 47 44 44 PHE PHE D . n D 1 48 GLY 48 45 45 GLY GLY D . n D 1 49 ILE 49 46 46 ILE ILE D . n D 1 50 SER 50 47 47 SER SER D . n D 1 51 ARG 51 48 48 ARG ARG D . n D 1 52 MET 52 49 49 MET MET D . n D 1 53 THR 53 50 50 THR THR D . n D 1 54 VAL 54 51 51 VAL VAL D . n D 1 55 ARG 55 52 52 ARG ARG D . n D 1 56 GLN 56 53 53 GLN GLN D . n D 1 57 ALA 57 54 54 ALA ALA D . n D 1 58 LEU 58 55 55 LEU LEU D . n D 1 59 SER 59 56 56 SER SER D . n D 1 60 ASN 60 57 57 ASN ASN D . n D 1 61 LEU 61 58 58 LEU LEU D . n D 1 62 VAL 62 59 59 VAL VAL D . n D 1 63 ASN 63 60 60 ASN ASN D . n D 1 64 GLU 64 61 61 GLU GLU D . n D 1 65 GLY 65 62 62 GLY GLY D . n D 1 66 LEU 66 63 63 LEU LEU D . n D 1 67 LEU 67 64 64 LEU LEU D . n D 1 68 TYR 68 65 65 TYR TYR D . n D 1 69 ARG 69 66 66 ARG ARG D . n D 1 70 LEU 70 67 67 LEU LEU D . n D 1 71 LYS 71 68 68 LYS LYS D . n D 1 72 GLY 72 69 69 GLY GLY D . n D 1 73 ARG 73 70 70 ARG ARG D . n D 1 74 GLY 74 71 71 GLY GLY D . n D 1 75 THR 75 72 72 THR THR D . n D 1 76 PHE 76 73 73 PHE PHE D . n D 1 77 VAL 77 74 74 VAL VAL D . n D 1 78 SER 78 75 75 SER SER D . n E 2 1 DG 1 1 1 DG DG E . n E 2 2 DT 2 2 2 DT DT E . n E 2 3 DG 3 3 3 DG DG E . n E 2 4 DG 4 4 4 DG DG E . n E 2 5 DT 5 5 5 DT DT E . n E 2 6 DC 6 6 6 DC DC E . n E 2 7 DT 7 7 7 DT DT E . n E 2 8 DA 8 8 8 DA DA E . n E 2 9 DG 9 9 9 DG DG E . n E 2 10 DA 10 10 10 DA DA E . n E 2 11 DC 11 11 11 DC DC E . n E 2 12 DC 12 12 12 DC DC E . n E 2 13 DA 13 13 13 DA DA E . n E 2 14 DC 14 14 14 DC DC E . n E 2 15 DT 15 15 15 DT DT E . n F 2 1 DG 1 1 1 DG DG F . n F 2 2 DT 2 2 2 DT DT F . n F 2 3 DG 3 3 3 DG DG F . n F 2 4 DG 4 4 4 DG DG F . n F 2 5 DT 5 5 5 DT DT F . n F 2 6 DC 6 6 6 DC DC F . n F 2 7 DT 7 7 7 DT DT F . n F 2 8 DA 8 8 8 DA DA F . n F 2 9 DG 9 9 9 DG DG F . n F 2 10 DA 10 10 10 DA DA F . n F 2 11 DC 11 11 11 DC DC F . n F 2 12 DC 12 12 12 DC DC F . n F 2 13 DA 13 13 13 DA DA F . n F 2 14 DC 14 14 14 DC DC F . n F 2 15 DT 15 15 15 DT DT F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CL 1 101 1 CL CL B . H 3 CL 1 101 1 CL CL C . I 4 HOH 1 101 168 HOH HOH A . I 4 HOH 2 102 188 HOH HOH A . I 4 HOH 3 103 204 HOH HOH A . I 4 HOH 4 104 281 HOH HOH A . I 4 HOH 5 105 180 HOH HOH A . I 4 HOH 6 106 62 HOH HOH A . I 4 HOH 7 107 238 HOH HOH A . I 4 HOH 8 108 256 HOH HOH A . I 4 HOH 9 109 83 HOH HOH A . I 4 HOH 10 110 101 HOH HOH A . I 4 HOH 11 111 202 HOH HOH A . I 4 HOH 12 112 28 HOH HOH A . I 4 HOH 13 113 130 HOH HOH A . I 4 HOH 14 114 37 HOH HOH A . I 4 HOH 15 115 16 HOH HOH A . I 4 HOH 16 116 105 HOH HOH A . I 4 HOH 17 117 158 HOH HOH A . I 4 HOH 18 118 183 HOH HOH A . I 4 HOH 19 119 167 HOH HOH A . I 4 HOH 20 120 103 HOH HOH A . I 4 HOH 21 121 65 HOH HOH A . I 4 HOH 22 122 199 HOH HOH A . I 4 HOH 23 123 60 HOH HOH A . I 4 HOH 24 124 209 HOH HOH A . I 4 HOH 25 125 112 HOH HOH A . I 4 HOH 26 126 252 HOH HOH A . I 4 HOH 27 127 39 HOH HOH A . I 4 HOH 28 128 72 HOH HOH A . I 4 HOH 29 129 156 HOH HOH A . I 4 HOH 30 130 178 HOH HOH A . I 4 HOH 31 131 261 HOH HOH A . I 4 HOH 32 132 200 HOH HOH A . I 4 HOH 33 133 122 HOH HOH A . I 4 HOH 34 134 160 HOH HOH A . I 4 HOH 35 135 95 HOH HOH A . I 4 HOH 36 136 111 HOH HOH A . I 4 HOH 37 137 121 HOH HOH A . I 4 HOH 38 138 186 HOH HOH A . I 4 HOH 39 139 77 HOH HOH A . I 4 HOH 40 140 49 HOH HOH A . I 4 HOH 41 141 58 HOH HOH A . I 4 HOH 42 142 288 HOH HOH A . I 4 HOH 43 143 219 HOH HOH A . I 4 HOH 44 144 262 HOH HOH A . I 4 HOH 45 145 157 HOH HOH A . I 4 HOH 46 146 173 HOH HOH A . I 4 HOH 47 147 221 HOH HOH A . I 4 HOH 48 148 226 HOH HOH A . J 4 HOH 1 201 148 HOH HOH B . J 4 HOH 2 202 218 HOH HOH B . J 4 HOH 3 203 134 HOH HOH B . J 4 HOH 4 204 97 HOH HOH B . J 4 HOH 5 205 271 HOH HOH B . J 4 HOH 6 206 22 HOH HOH B . J 4 HOH 7 207 86 HOH HOH B . J 4 HOH 8 208 224 HOH HOH B . J 4 HOH 9 209 237 HOH HOH B . J 4 HOH 10 210 165 HOH HOH B . J 4 HOH 11 211 266 HOH HOH B . J 4 HOH 12 212 109 HOH HOH B . J 4 HOH 13 213 53 HOH HOH B . J 4 HOH 14 214 57 HOH HOH B . J 4 HOH 15 215 215 HOH HOH B . J 4 HOH 16 216 36 HOH HOH B . J 4 HOH 17 217 98 HOH HOH B . J 4 HOH 18 218 151 HOH HOH B . J 4 HOH 19 219 117 HOH HOH B . J 4 HOH 20 220 68 HOH HOH B . J 4 HOH 21 221 76 HOH HOH B . J 4 HOH 22 222 192 HOH HOH B . J 4 HOH 23 223 147 HOH HOH B . J 4 HOH 24 224 106 HOH HOH B . J 4 HOH 25 225 34 HOH HOH B . J 4 HOH 26 226 23 HOH HOH B . J 4 HOH 27 227 236 HOH HOH B . J 4 HOH 28 228 85 HOH HOH B . J 4 HOH 29 229 43 HOH HOH B . J 4 HOH 30 230 115 HOH HOH B . J 4 HOH 31 231 216 HOH HOH B . J 4 HOH 32 232 133 HOH HOH B . J 4 HOH 33 233 129 HOH HOH B . J 4 HOH 34 234 14 HOH HOH B . J 4 HOH 35 235 172 HOH HOH B . J 4 HOH 36 236 175 HOH HOH B . J 4 HOH 37 237 54 HOH HOH B . J 4 HOH 38 238 189 HOH HOH B . J 4 HOH 39 239 197 HOH HOH B . J 4 HOH 40 240 211 HOH HOH B . J 4 HOH 41 241 250 HOH HOH B . J 4 HOH 42 242 280 HOH HOH B . J 4 HOH 43 243 114 HOH HOH B . J 4 HOH 44 244 228 HOH HOH B . J 4 HOH 45 245 205 HOH HOH B . J 4 HOH 46 246 227 HOH HOH B . J 4 HOH 47 247 126 HOH HOH B . J 4 HOH 48 248 29 HOH HOH B . J 4 HOH 49 249 214 HOH HOH B . J 4 HOH 50 250 260 HOH HOH B . J 4 HOH 51 251 283 HOH HOH B . J 4 HOH 52 252 245 HOH HOH B . J 4 HOH 53 253 289 HOH HOH B . K 4 HOH 1 201 164 HOH HOH C . K 4 HOH 2 202 229 HOH HOH C . K 4 HOH 3 203 174 HOH HOH C . K 4 HOH 4 204 230 HOH HOH C . K 4 HOH 5 205 146 HOH HOH C . K 4 HOH 6 206 241 HOH HOH C . K 4 HOH 7 207 203 HOH HOH C . K 4 HOH 8 208 213 HOH HOH C . K 4 HOH 9 209 99 HOH HOH C . K 4 HOH 10 210 234 HOH HOH C . K 4 HOH 11 211 152 HOH HOH C . K 4 HOH 12 212 196 HOH HOH C . K 4 HOH 13 213 90 HOH HOH C . K 4 HOH 14 214 142 HOH HOH C . K 4 HOH 15 215 104 HOH HOH C . K 4 HOH 16 216 286 HOH HOH C . K 4 HOH 17 217 181 HOH HOH C . K 4 HOH 18 218 136 HOH HOH C . K 4 HOH 19 219 161 HOH HOH C . K 4 HOH 20 220 169 HOH HOH C . K 4 HOH 21 221 193 HOH HOH C . K 4 HOH 22 222 79 HOH HOH C . K 4 HOH 23 223 233 HOH HOH C . K 4 HOH 24 224 35 HOH HOH C . K 4 HOH 25 225 223 HOH HOH C . K 4 HOH 26 226 210 HOH HOH C . K 4 HOH 27 227 206 HOH HOH C . K 4 HOH 28 228 253 HOH HOH C . K 4 HOH 29 229 84 HOH HOH C . K 4 HOH 30 230 138 HOH HOH C . K 4 HOH 31 231 124 HOH HOH C . K 4 HOH 32 232 89 HOH HOH C . K 4 HOH 33 233 208 HOH HOH C . K 4 HOH 34 234 171 HOH HOH C . K 4 HOH 35 235 254 HOH HOH C . K 4 HOH 36 236 52 HOH HOH C . K 4 HOH 37 237 70 HOH HOH C . K 4 HOH 38 238 225 HOH HOH C . K 4 HOH 39 239 61 HOH HOH C . K 4 HOH 40 240 232 HOH HOH C . K 4 HOH 41 241 187 HOH HOH C . K 4 HOH 42 242 59 HOH HOH C . K 4 HOH 43 243 153 HOH HOH C . K 4 HOH 44 244 272 HOH HOH C . K 4 HOH 45 245 201 HOH HOH C . K 4 HOH 46 246 170 HOH HOH C . K 4 HOH 47 247 269 HOH HOH C . K 4 HOH 48 248 258 HOH HOH C . K 4 HOH 49 249 276 HOH HOH C . K 4 HOH 50 250 282 HOH HOH C . K 4 HOH 51 251 287 HOH HOH C . K 4 HOH 52 252 265 HOH HOH C . L 4 HOH 1 101 149 HOH HOH D . L 4 HOH 2 102 182 HOH HOH D . L 4 HOH 3 103 108 HOH HOH D . L 4 HOH 4 104 274 HOH HOH D . L 4 HOH 5 105 244 HOH HOH D . L 4 HOH 6 106 110 HOH HOH D . L 4 HOH 7 107 127 HOH HOH D . L 4 HOH 8 108 128 HOH HOH D . L 4 HOH 9 109 67 HOH HOH D . L 4 HOH 10 110 240 HOH HOH D . L 4 HOH 11 111 235 HOH HOH D . L 4 HOH 12 112 7 HOH HOH D . L 4 HOH 13 113 125 HOH HOH D . L 4 HOH 14 114 74 HOH HOH D . L 4 HOH 15 115 143 HOH HOH D . L 4 HOH 16 116 177 HOH HOH D . L 4 HOH 17 117 31 HOH HOH D . L 4 HOH 18 118 273 HOH HOH D . L 4 HOH 19 119 155 HOH HOH D . L 4 HOH 20 120 163 HOH HOH D . L 4 HOH 21 121 166 HOH HOH D . L 4 HOH 22 122 11 HOH HOH D . L 4 HOH 23 123 51 HOH HOH D . L 4 HOH 24 124 140 HOH HOH D . L 4 HOH 25 125 19 HOH HOH D . L 4 HOH 26 126 264 HOH HOH D . L 4 HOH 27 127 145 HOH HOH D . L 4 HOH 28 128 284 HOH HOH D . L 4 HOH 29 129 50 HOH HOH D . L 4 HOH 30 130 107 HOH HOH D . L 4 HOH 31 131 285 HOH HOH D . L 4 HOH 32 132 176 HOH HOH D . L 4 HOH 33 133 137 HOH HOH D . L 4 HOH 34 134 135 HOH HOH D . L 4 HOH 35 135 6 HOH HOH D . L 4 HOH 36 136 278 HOH HOH D . M 4 HOH 1 101 123 HOH HOH E . M 4 HOH 2 102 162 HOH HOH E . M 4 HOH 3 103 277 HOH HOH E . M 4 HOH 4 104 118 HOH HOH E . M 4 HOH 5 105 24 HOH HOH E . M 4 HOH 6 106 33 HOH HOH E . M 4 HOH 7 107 44 HOH HOH E . M 4 HOH 8 108 13 HOH HOH E . M 4 HOH 9 109 46 HOH HOH E . M 4 HOH 10 110 8 HOH HOH E . M 4 HOH 11 111 116 HOH HOH E . M 4 HOH 12 112 63 HOH HOH E . M 4 HOH 13 113 212 HOH HOH E . M 4 HOH 14 114 257 HOH HOH E . M 4 HOH 15 115 73 HOH HOH E . M 4 HOH 16 116 194 HOH HOH E . M 4 HOH 17 117 18 HOH HOH E . M 4 HOH 18 118 132 HOH HOH E . M 4 HOH 19 119 195 HOH HOH E . M 4 HOH 20 120 154 HOH HOH E . M 4 HOH 21 121 26 HOH HOH E . M 4 HOH 22 122 255 HOH HOH E . M 4 HOH 23 123 25 HOH HOH E . M 4 HOH 24 124 248 HOH HOH E . M 4 HOH 25 125 45 HOH HOH E . M 4 HOH 26 126 48 HOH HOH E . M 4 HOH 27 127 190 HOH HOH E . M 4 HOH 28 128 15 HOH HOH E . M 4 HOH 29 129 3 HOH HOH E . M 4 HOH 30 130 27 HOH HOH E . M 4 HOH 31 131 21 HOH HOH E . M 4 HOH 32 132 32 HOH HOH E . M 4 HOH 33 133 4 HOH HOH E . M 4 HOH 34 134 87 HOH HOH E . M 4 HOH 35 135 75 HOH HOH E . M 4 HOH 36 136 222 HOH HOH E . M 4 HOH 37 137 207 HOH HOH E . M 4 HOH 38 138 81 HOH HOH E . M 4 HOH 39 139 263 HOH HOH E . M 4 HOH 40 140 100 HOH HOH E . M 4 HOH 41 141 131 HOH HOH E . M 4 HOH 42 142 150 HOH HOH E . M 4 HOH 43 143 94 HOH HOH E . M 4 HOH 44 144 80 HOH HOH E . M 4 HOH 45 145 91 HOH HOH E . M 4 HOH 46 146 96 HOH HOH E . M 4 HOH 47 147 139 HOH HOH E . N 4 HOH 1 101 251 HOH HOH F . N 4 HOH 2 102 267 HOH HOH F . N 4 HOH 3 103 242 HOH HOH F . N 4 HOH 4 104 239 HOH HOH F . N 4 HOH 5 105 249 HOH HOH F . N 4 HOH 6 106 47 HOH HOH F . N 4 HOH 7 107 10 HOH HOH F . N 4 HOH 8 108 184 HOH HOH F . N 4 HOH 9 109 185 HOH HOH F . N 4 HOH 10 110 66 HOH HOH F . N 4 HOH 11 111 141 HOH HOH F . N 4 HOH 12 112 78 HOH HOH F . N 4 HOH 13 113 9 HOH HOH F . N 4 HOH 14 114 42 HOH HOH F . N 4 HOH 15 115 82 HOH HOH F . N 4 HOH 16 116 93 HOH HOH F . N 4 HOH 17 117 92 HOH HOH F . N 4 HOH 18 118 120 HOH HOH F . N 4 HOH 19 119 243 HOH HOH F . N 4 HOH 20 120 198 HOH HOH F . N 4 HOH 21 121 12 HOH HOH F . N 4 HOH 22 122 38 HOH HOH F . N 4 HOH 23 123 247 HOH HOH F . N 4 HOH 24 124 41 HOH HOH F . N 4 HOH 25 125 279 HOH HOH F . N 4 HOH 26 126 55 HOH HOH F . N 4 HOH 27 127 20 HOH HOH F . N 4 HOH 28 128 159 HOH HOH F . N 4 HOH 29 129 30 HOH HOH F . N 4 HOH 30 130 71 HOH HOH F . N 4 HOH 31 131 5 HOH HOH F . N 4 HOH 32 132 17 HOH HOH F . N 4 HOH 33 133 69 HOH HOH F . N 4 HOH 34 134 56 HOH HOH F . N 4 HOH 35 135 64 HOH HOH F . N 4 HOH 36 136 40 HOH HOH F . N 4 HOH 37 137 259 HOH HOH F . N 4 HOH 38 138 144 HOH HOH F . N 4 HOH 39 139 191 HOH HOH F . N 4 HOH 40 140 102 HOH HOH F . N 4 HOH 41 141 179 HOH HOH F . N 4 HOH 42 142 217 HOH HOH F . N 4 HOH 43 143 119 HOH HOH F . N 4 HOH 44 144 220 HOH HOH F . N 4 HOH 45 145 246 HOH HOH F . N 4 HOH 46 146 268 HOH HOH F . N 4 HOH 47 147 88 HOH HOH F . N 4 HOH 48 148 231 HOH HOH F . N 4 HOH 49 149 113 HOH HOH F . N 4 HOH 50 150 270 HOH HOH F . N 4 HOH 51 151 275 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8830 ? 1 MORE -68 ? 1 'SSA (A^2)' 18350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-14 2 'Structure model' 1 1 2015-01-21 3 'Structure model' 1 2 2015-02-04 4 'Structure model' 2 0 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' ndb_struct_na_base_pair 6 4 'Structure model' ndb_struct_na_base_pair_step 7 4 'Structure model' pdbx_audit_support 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' pdbx_nonpoly_scheme 10 4 'Structure model' pdbx_validate_close_contact 11 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_ndb_struct_na_base_pair.propeller' 8 4 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 9 4 'Structure model' '_ndb_struct_na_base_pair_step.roll' 10 4 'Structure model' '_ndb_struct_na_base_pair_step.tip' 11 4 'Structure model' '_pdbx_audit_support.funding_organization' 12 4 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 13 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 14 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 15 4 'Structure model' '_struct_site_gen.auth_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.4_1496)' 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 101 ? ? O A HOH 143 ? ? 2.11 2 1 OP2 F DA 8 ? ? O F HOH 101 ? ? 2.13 3 1 O E HOH 143 ? ? O F HOH 140 ? ? 2.16 4 1 O B MET 1 ? ? O B HOH 201 ? ? 2.18 5 1 O C HOH 203 ? ? O C HOH 214 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 48 ? ? CZ B ARG 48 ? ? NH1 B ARG 48 ? ? 123.47 120.30 3.17 0.50 N 2 1 "C3'" E DG 1 ? ? "C2'" E DG 1 ? ? "C1'" E DG 1 ? ? 97.55 102.40 -4.85 0.80 N 3 1 "O4'" E DG 1 ? ? "C1'" E DG 1 ? ? N9 E DG 1 ? ? 112.57 108.30 4.27 0.30 N 4 1 "O4'" E DA 8 ? ? "C1'" E DA 8 ? ? N9 E DA 8 ? ? 110.65 108.30 2.35 0.30 N 5 1 "O4'" F DG 1 ? ? "C1'" F DG 1 ? ? N9 F DG 1 ? ? 113.01 108.30 4.71 0.30 N 6 1 "O4'" F DA 8 ? ? "C1'" F DA 8 ? ? N9 F DA 8 ? ? 110.37 108.30 2.07 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 31 ? ? 55.15 19.53 2 1 PRO A 35 ? ? -49.14 152.16 3 1 ARG A 70 ? ? -122.43 -54.32 4 1 ARG B 70 ? ? -124.01 -57.30 5 1 ARG B 70 ? ? -123.55 -58.28 6 1 ASP C 31 ? ? 57.18 19.68 7 1 ARG C 70 ? ? -134.92 -47.92 8 1 PRO D 30 ? ? -39.65 132.75 9 1 ARG D 70 ? ? -132.86 -49.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 B GLY -2 ? B GLY 1 5 1 Y 1 B SER -1 ? B SER 2 6 1 Y 1 B HIS 0 ? B HIS 3 7 1 Y 1 C GLY -2 ? C GLY 1 8 1 Y 1 C SER -1 ? C SER 2 9 1 Y 1 C HIS 0 ? C HIS 3 10 1 Y 1 D GLY -2 ? D GLY 1 11 1 Y 1 D SER -1 ? D SER 2 12 1 Y 1 D HIS 0 ? D HIS 3 13 1 Y 1 D MET 1 ? D MET 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 DA OP3 O N N 75 DA P P N N 76 DA OP1 O N N 77 DA OP2 O N N 78 DA "O5'" O N N 79 DA "C5'" C N N 80 DA "C4'" C N R 81 DA "O4'" O N N 82 DA "C3'" C N S 83 DA "O3'" O N N 84 DA "C2'" C N N 85 DA "C1'" C N R 86 DA N9 N Y N 87 DA C8 C Y N 88 DA N7 N Y N 89 DA C5 C Y N 90 DA C6 C Y N 91 DA N6 N N N 92 DA N1 N Y N 93 DA C2 C Y N 94 DA N3 N Y N 95 DA C4 C Y N 96 DA HOP3 H N N 97 DA HOP2 H N N 98 DA "H5'" H N N 99 DA "H5''" H N N 100 DA "H4'" H N N 101 DA "H3'" H N N 102 DA "HO3'" H N N 103 DA "H2'" H N N 104 DA "H2''" H N N 105 DA "H1'" H N N 106 DA H8 H N N 107 DA H61 H N N 108 DA H62 H N N 109 DA H2 H N N 110 DC OP3 O N N 111 DC P P N N 112 DC OP1 O N N 113 DC OP2 O N N 114 DC "O5'" O N N 115 DC "C5'" C N N 116 DC "C4'" C N R 117 DC "O4'" O N N 118 DC "C3'" C N S 119 DC "O3'" O N N 120 DC "C2'" C N N 121 DC "C1'" C N R 122 DC N1 N N N 123 DC C2 C N N 124 DC O2 O N N 125 DC N3 N N N 126 DC C4 C N N 127 DC N4 N N N 128 DC C5 C N N 129 DC C6 C N N 130 DC HOP3 H N N 131 DC HOP2 H N N 132 DC "H5'" H N N 133 DC "H5''" H N N 134 DC "H4'" H N N 135 DC "H3'" H N N 136 DC "HO3'" H N N 137 DC "H2'" H N N 138 DC "H2''" H N N 139 DC "H1'" H N N 140 DC H41 H N N 141 DC H42 H N N 142 DC H5 H N N 143 DC H6 H N N 144 DG OP3 O N N 145 DG P P N N 146 DG OP1 O N N 147 DG OP2 O N N 148 DG "O5'" O N N 149 DG "C5'" C N N 150 DG "C4'" C N R 151 DG "O4'" O N N 152 DG "C3'" C N S 153 DG "O3'" O N N 154 DG "C2'" C N N 155 DG "C1'" C N R 156 DG N9 N Y N 157 DG C8 C Y N 158 DG N7 N Y N 159 DG C5 C Y N 160 DG C6 C N N 161 DG O6 O N N 162 DG N1 N N N 163 DG C2 C N N 164 DG N2 N N N 165 DG N3 N N N 166 DG C4 C Y N 167 DG HOP3 H N N 168 DG HOP2 H N N 169 DG "H5'" H N N 170 DG "H5''" H N N 171 DG "H4'" H N N 172 DG "H3'" H N N 173 DG "HO3'" H N N 174 DG "H2'" H N N 175 DG "H2''" H N N 176 DG "H1'" H N N 177 DG H8 H N N 178 DG H1 H N N 179 DG H21 H N N 180 DG H22 H N N 181 DT OP3 O N N 182 DT P P N N 183 DT OP1 O N N 184 DT OP2 O N N 185 DT "O5'" O N N 186 DT "C5'" C N N 187 DT "C4'" C N R 188 DT "O4'" O N N 189 DT "C3'" C N S 190 DT "O3'" O N N 191 DT "C2'" C N N 192 DT "C1'" C N R 193 DT N1 N N N 194 DT C2 C N N 195 DT O2 O N N 196 DT N3 N N N 197 DT C4 C N N 198 DT O4 O N N 199 DT C5 C N N 200 DT C7 C N N 201 DT C6 C N N 202 DT HOP3 H N N 203 DT HOP2 H N N 204 DT "H5'" H N N 205 DT "H5''" H N N 206 DT "H4'" H N N 207 DT "H3'" H N N 208 DT "HO3'" H N N 209 DT "H2'" H N N 210 DT "H2''" H N N 211 DT "H1'" H N N 212 DT H3 H N N 213 DT H71 H N N 214 DT H72 H N N 215 DT H73 H N N 216 DT H6 H N N 217 GLN N N N N 218 GLN CA C N S 219 GLN C C N N 220 GLN O O N N 221 GLN CB C N N 222 GLN CG C N N 223 GLN CD C N N 224 GLN OE1 O N N 225 GLN NE2 N N N 226 GLN OXT O N N 227 GLN H H N N 228 GLN H2 H N N 229 GLN HA H N N 230 GLN HB2 H N N 231 GLN HB3 H N N 232 GLN HG2 H N N 233 GLN HG3 H N N 234 GLN HE21 H N N 235 GLN HE22 H N N 236 GLN HXT H N N 237 GLU N N N N 238 GLU CA C N S 239 GLU C C N N 240 GLU O O N N 241 GLU CB C N N 242 GLU CG C N N 243 GLU CD C N N 244 GLU OE1 O N N 245 GLU OE2 O N N 246 GLU OXT O N N 247 GLU H H N N 248 GLU H2 H N N 249 GLU HA H N N 250 GLU HB2 H N N 251 GLU HB3 H N N 252 GLU HG2 H N N 253 GLU HG3 H N N 254 GLU HE2 H N N 255 GLU HXT H N N 256 GLY N N N N 257 GLY CA C N N 258 GLY C C N N 259 GLY O O N N 260 GLY OXT O N N 261 GLY H H N N 262 GLY H2 H N N 263 GLY HA2 H N N 264 GLY HA3 H N N 265 GLY HXT H N N 266 HIS N N N N 267 HIS CA C N S 268 HIS C C N N 269 HIS O O N N 270 HIS CB C N N 271 HIS CG C Y N 272 HIS ND1 N Y N 273 HIS CD2 C Y N 274 HIS CE1 C Y N 275 HIS NE2 N Y N 276 HIS OXT O N N 277 HIS H H N N 278 HIS H2 H N N 279 HIS HA H N N 280 HIS HB2 H N N 281 HIS HB3 H N N 282 HIS HD1 H N N 283 HIS HD2 H N N 284 HIS HE1 H N N 285 HIS HE2 H N N 286 HIS HXT H N N 287 HOH O O N N 288 HOH H1 H N N 289 HOH H2 H N N 290 ILE N N N N 291 ILE CA C N S 292 ILE C C N N 293 ILE O O N N 294 ILE CB C N S 295 ILE CG1 C N N 296 ILE CG2 C N N 297 ILE CD1 C N N 298 ILE OXT O N N 299 ILE H H N N 300 ILE H2 H N N 301 ILE HA H N N 302 ILE HB H N N 303 ILE HG12 H N N 304 ILE HG13 H N N 305 ILE HG21 H N N 306 ILE HG22 H N N 307 ILE HG23 H N N 308 ILE HD11 H N N 309 ILE HD12 H N N 310 ILE HD13 H N N 311 ILE HXT H N N 312 LEU N N N N 313 LEU CA C N S 314 LEU C C N N 315 LEU O O N N 316 LEU CB C N N 317 LEU CG C N N 318 LEU CD1 C N N 319 LEU CD2 C N N 320 LEU OXT O N N 321 LEU H H N N 322 LEU H2 H N N 323 LEU HA H N N 324 LEU HB2 H N N 325 LEU HB3 H N N 326 LEU HG H N N 327 LEU HD11 H N N 328 LEU HD12 H N N 329 LEU HD13 H N N 330 LEU HD21 H N N 331 LEU HD22 H N N 332 LEU HD23 H N N 333 LEU HXT H N N 334 LYS N N N N 335 LYS CA C N S 336 LYS C C N N 337 LYS O O N N 338 LYS CB C N N 339 LYS CG C N N 340 LYS CD C N N 341 LYS CE C N N 342 LYS NZ N N N 343 LYS OXT O N N 344 LYS H H N N 345 LYS H2 H N N 346 LYS HA H N N 347 LYS HB2 H N N 348 LYS HB3 H N N 349 LYS HG2 H N N 350 LYS HG3 H N N 351 LYS HD2 H N N 352 LYS HD3 H N N 353 LYS HE2 H N N 354 LYS HE3 H N N 355 LYS HZ1 H N N 356 LYS HZ2 H N N 357 LYS HZ3 H N N 358 LYS HXT H N N 359 MET N N N N 360 MET CA C N S 361 MET C C N N 362 MET O O N N 363 MET CB C N N 364 MET CG C N N 365 MET SD S N N 366 MET CE C N N 367 MET OXT O N N 368 MET H H N N 369 MET H2 H N N 370 MET HA H N N 371 MET HB2 H N N 372 MET HB3 H N N 373 MET HG2 H N N 374 MET HG3 H N N 375 MET HE1 H N N 376 MET HE2 H N N 377 MET HE3 H N N 378 MET HXT H N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 THR N N N N 434 THR CA C N S 435 THR C C N N 436 THR O O N N 437 THR CB C N R 438 THR OG1 O N N 439 THR CG2 C N N 440 THR OXT O N N 441 THR H H N N 442 THR H2 H N N 443 THR HA H N N 444 THR HB H N N 445 THR HG1 H N N 446 THR HG21 H N N 447 THR HG22 H N N 448 THR HG23 H N N 449 THR HXT H N N 450 TYR N N N N 451 TYR CA C N S 452 TYR C C N N 453 TYR O O N N 454 TYR CB C N N 455 TYR CG C Y N 456 TYR CD1 C Y N 457 TYR CD2 C Y N 458 TYR CE1 C Y N 459 TYR CE2 C Y N 460 TYR CZ C Y N 461 TYR OH O N N 462 TYR OXT O N N 463 TYR H H N N 464 TYR H2 H N N 465 TYR HA H N N 466 TYR HB2 H N N 467 TYR HB3 H N N 468 TYR HD1 H N N 469 TYR HD2 H N N 470 TYR HE1 H N N 471 TYR HE2 H N N 472 TYR HH H N N 473 TYR HXT H N N 474 VAL N N N N 475 VAL CA C N S 476 VAL C C N N 477 VAL O O N N 478 VAL CB C N N 479 VAL CG1 C N N 480 VAL CG2 C N N 481 VAL OXT O N N 482 VAL H H N N 483 VAL H2 H N N 484 VAL HA H N N 485 VAL HB H N N 486 VAL HG11 H N N 487 VAL HG12 H N N 488 VAL HG13 H N N 489 VAL HG21 H N N 490 VAL HG22 H N N 491 VAL HG23 H N N 492 VAL HXT H N N 493 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TYR N CA sing N N 442 TYR N H sing N N 443 TYR N H2 sing N N 444 TYR CA C sing N N 445 TYR CA CB sing N N 446 TYR CA HA sing N N 447 TYR C O doub N N 448 TYR C OXT sing N N 449 TYR CB CG sing N N 450 TYR CB HB2 sing N N 451 TYR CB HB3 sing N N 452 TYR CG CD1 doub Y N 453 TYR CG CD2 sing Y N 454 TYR CD1 CE1 sing Y N 455 TYR CD1 HD1 sing N N 456 TYR CD2 CE2 doub Y N 457 TYR CD2 HD2 sing N N 458 TYR CE1 CZ doub Y N 459 TYR CE1 HE1 sing N N 460 TYR CE2 CZ sing Y N 461 TYR CE2 HE2 sing N N 462 TYR CZ OH sing N N 463 TYR OH HH sing N N 464 TYR OXT HXT sing N N 465 VAL N CA sing N N 466 VAL N H sing N N 467 VAL N H2 sing N N 468 VAL CA C sing N N 469 VAL CA CB sing N N 470 VAL CA HA sing N N 471 VAL C O doub N N 472 VAL C OXT sing N N 473 VAL CB CG1 sing N N 474 VAL CB CG2 sing N N 475 VAL CB HB sing N N 476 VAL CG1 HG11 sing N N 477 VAL CG1 HG12 sing N N 478 VAL CG1 HG13 sing N N 479 VAL CG2 HG21 sing N N 480 VAL CG2 HG22 sing N N 481 VAL CG2 HG23 sing N N 482 VAL OXT HXT sing N N 483 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4U0Y 'double helix' 4U0Y 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 E DG 1 1_555 F DC 14 1_555 -0.189 -0.113 -0.086 7.425 12.082 -0.144 1 E_DG1:DC14_F E 1 ? F 14 ? 19 1 1 E DT 2 1_555 F DA 13 1_555 -0.091 -0.146 0.369 5.541 -10.432 -0.206 2 E_DT2:DA13_F E 2 ? F 13 ? 20 1 1 E DG 3 1_555 F DC 12 1_555 -0.075 -0.081 0.447 12.804 -3.971 -1.043 3 E_DG3:DC12_F E 3 ? F 12 ? 19 1 1 E DG 4 1_555 F DC 11 1_555 -0.385 -0.220 -0.387 -11.730 -9.181 0.093 4 E_DG4:DC11_F E 4 ? F 11 ? 19 1 1 E DT 5 1_555 F DA 10 1_555 -0.188 -0.117 0.079 1.574 -12.566 2.586 5 E_DT5:DA10_F E 5 ? F 10 ? 20 1 1 E DC 6 1_555 F DG 9 1_555 0.101 -0.048 0.168 -2.520 -8.568 0.032 6 E_DC6:DG9_F E 6 ? F 9 ? 19 1 1 E DT 7 1_555 F DA 8 1_555 -0.070 -0.092 -0.336 -2.670 -8.794 3.099 7 E_DT7:DA8_F E 7 ? F 8 ? 20 1 1 E DA 8 1_555 F DT 7 1_555 0.266 -0.081 -0.211 4.209 -8.632 2.881 8 E_DA8:DT7_F E 8 ? F 7 ? 20 1 1 E DG 9 1_555 F DC 6 1_555 -0.138 -0.042 0.113 2.212 -7.310 0.789 9 E_DG9:DC6_F E 9 ? F 6 ? 19 1 1 E DA 10 1_555 F DT 5 1_555 0.193 -0.046 0.101 -0.478 -15.120 4.897 10 E_DA10:DT5_F E 10 ? F 5 ? 20 1 1 E DC 11 1_555 F DG 4 1_555 0.314 -0.096 -0.526 12.499 -7.797 2.777 11 E_DC11:DG4_F E 11 ? F 4 ? 19 1 1 E DC 12 1_555 F DG 3 1_555 0.154 -0.141 0.141 -10.340 -4.078 0.372 12 E_DC12:DG3_F E 12 ? F 3 ? 19 1 1 E DA 13 1_555 F DT 2 1_555 0.029 -0.179 0.134 -9.643 -12.457 1.761 13 E_DA13:DT2_F E 13 ? F 2 ? 20 1 1 E DC 14 1_555 F DG 1 1_555 0.142 -0.086 -0.073 -9.416 16.606 0.772 14 E_DC14:DG1_F E 14 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 E DG 1 1_555 F DC 14 1_555 E DT 2 1_555 F DA 13 1_555 -0.871 -0.581 3.525 -2.597 -6.377 31.662 0.202 1.055 3.628 -11.517 4.690 32.383 1 EE_DG1DT2:DA13DC14_FF E 1 ? F 14 ? E 2 ? F 13 ? 1 E DT 2 1_555 F DA 13 1_555 E DG 3 1_555 F DC 12 1_555 0.396 -0.193 3.037 0.939 3.437 36.796 -0.734 -0.508 3.016 5.430 -1.483 36.962 2 EE_DT2DG3:DC12DA13_FF E 2 ? F 13 ? E 3 ? F 12 ? 1 E DG 3 1_555 F DC 12 1_555 E DG 4 1_555 F DC 11 1_555 0.065 -1.305 3.889 6.077 2.509 38.996 -2.277 0.746 3.769 3.726 -9.025 39.525 3 EE_DG3DG4:DC11DC12_FF E 3 ? F 12 ? E 4 ? F 11 ? 1 E DG 4 1_555 F DC 11 1_555 E DT 5 1_555 F DA 10 1_555 0.290 -0.658 2.969 -4.738 4.448 31.617 -1.886 -1.269 2.781 8.056 8.583 32.262 4 EE_DG4DT5:DA10DC11_FF E 4 ? F 11 ? E 5 ? F 10 ? 1 E DT 5 1_555 F DA 10 1_555 E DC 6 1_555 F DG 9 1_555 0.326 -1.131 3.472 -1.894 -0.467 34.560 -1.825 -0.858 3.464 -0.785 3.184 34.613 5 EE_DT5DC6:DG9DA10_FF E 5 ? F 10 ? E 6 ? F 9 ? 1 E DC 6 1_555 F DG 9 1_555 E DT 7 1_555 F DA 8 1_555 -0.925 -0.862 3.256 5.418 1.903 25.211 -2.434 3.510 2.924 4.289 -12.211 25.846 6 EE_DC6DT7:DA8DG9_FF E 6 ? F 9 ? E 7 ? F 8 ? 1 E DT 7 1_555 F DA 8 1_555 E DA 8 1_555 F DT 7 1_555 -0.106 1.091 3.547 -1.253 18.156 23.677 -2.452 -0.110 3.491 37.889 2.615 29.784 7 EE_DT7DA8:DT7DA8_FF E 7 ? F 8 ? E 8 ? F 7 ? 1 E DA 8 1_555 F DT 7 1_555 E DG 9 1_555 F DC 6 1_555 0.977 -0.825 3.386 -3.988 0.322 24.433 -2.022 -3.501 3.177 0.754 9.342 24.753 8 EE_DA8DG9:DC6DT7_FF E 8 ? F 7 ? E 9 ? F 6 ? 1 E DG 9 1_555 F DC 6 1_555 E DA 10 1_555 F DT 5 1_555 -0.311 -1.092 3.433 2.305 -0.353 35.390 -1.739 0.865 3.417 -0.579 -3.786 35.464 9 EE_DG9DA10:DT5DC6_FF E 9 ? F 6 ? E 10 ? F 5 ? 1 E DA 10 1_555 F DT 5 1_555 E DC 11 1_555 F DG 4 1_555 -0.258 -0.572 2.963 5.277 6.181 30.587 -2.061 1.336 2.717 11.466 -9.788 31.623 10 EE_DA10DC11:DG4DT5_FF E 10 ? F 5 ? E 11 ? F 4 ? 1 E DC 11 1_555 F DG 4 1_555 E DC 12 1_555 F DG 3 1_555 -0.202 -1.174 3.835 -5.401 2.931 39.327 -2.121 -0.432 3.736 4.324 7.966 39.785 11 EE_DC11DC12:DG3DG4_FF E 11 ? F 4 ? E 12 ? F 3 ? 1 E DC 12 1_555 F DG 3 1_555 E DA 13 1_555 F DT 2 1_555 -0.419 0.006 3.241 -1.741 5.869 35.809 -0.805 0.431 3.218 9.459 2.805 36.312 12 EE_DC12DA13:DT2DG3_FF E 12 ? F 3 ? E 13 ? F 2 ? 1 E DA 13 1_555 F DT 2 1_555 E DC 14 1_555 F DG 1 1_555 0.826 -0.504 3.526 -0.035 -8.369 33.105 0.599 -1.414 3.544 -14.402 0.061 34.118 13 EE_DA13DC14:DG1DT2_FF E 13 ? F 2 ? E 14 ? F 1 ? # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WV0 _pdbx_initial_refinement_model.details 'DNA-binding domain of PDB entry 2wv0' #