data_4U13 # _entry.id 4U13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U13 pdb_00004u13 10.2210/pdb4u13/pdb WWPDB D_1000202631 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-021002 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U13 _pdbx_database_status.recvd_initial_deposition_date 2014-07-14 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shabalin, I.G.' 1 ? 'Bacal, P.' 2 ? 'Osinski, T.' 3 ? 'Cooper, D.R.' 4 ? 'Szlachta, K.' 5 ? 'Stead, M.' 6 ? 'Grabowski, M.' 7 ? 'Hammonds, J.' 8 ? 'Ahmed, M.' 9 ? 'Hillerich, B.S.' 10 ? 'Bonanno, J.' 11 ? 'Seidel, R.' 12 ? 'Almo, S.C.' 13 ? 'Minor, W.' 14 0000-0001-7075-7090 'New York Structural Genomics Research Consortium (NYSGRC)' 15 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a putative polyketide cyclase (protein SMa1630) from Sinorhizobium meliloti at 2.3 A resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shabalin, I.G.' 1 ? primary 'Bacal, P.' 2 ? primary 'Osinski, T.' 3 ? primary 'Cooper, D.R.' 4 ? primary 'Szlachta, K.' 5 ? primary 'Stead, M.' 6 ? primary 'Grabowski, M.' 7 ? primary 'Hammonds, J.' 8 ? primary 'Ahmed, M.' 9 ? primary 'Hillerich, B.S.' 10 ? primary 'Bonanno, J.' 11 ? primary 'Seidel, R.' 12 ? primary 'Almo, S.C.' 13 ? primary 'Minor, W.' 14 0000-0001-7075-7090 # _cell.length_a 47.764 _cell.length_b 42.295 _cell.length_c 62.287 _cell.angle_alpha 90.000 _cell.angle_beta 111.830 _cell.angle_gamma 90.000 _cell.entry_id 4U13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative polyketide cyclase SMa1630' 12030.148 2 ? ? ? 'The protein was expressed with HIS-tag but was subjected to limited proteolysis with chymotrypsin.' 2 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;FQS(MSE)DLPDIVN(MSE)YFDADSCNDTDALSETFAPDAVVEDEGARHQGVVAILRWWVAAKKAASYVAEPLESTVDG DKALVRAKVSGRFPGSPVTLTYSFTIKDGRIARLEIQ ; _entity_poly.pdbx_seq_one_letter_code_can ;FQSMDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDEGARHQGVVAILRWWVAAKKAASYVAEPLESTVDGDKALVRAK VSGRFPGSPVTLTYSFTIKDGRIARLEIQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGRC-021002 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 GLN n 1 3 SER n 1 4 MSE n 1 5 ASP n 1 6 LEU n 1 7 PRO n 1 8 ASP n 1 9 ILE n 1 10 VAL n 1 11 ASN n 1 12 MSE n 1 13 TYR n 1 14 PHE n 1 15 ASP n 1 16 ALA n 1 17 ASP n 1 18 SER n 1 19 CYS n 1 20 ASN n 1 21 ASP n 1 22 THR n 1 23 ASP n 1 24 ALA n 1 25 LEU n 1 26 SER n 1 27 GLU n 1 28 THR n 1 29 PHE n 1 30 ALA n 1 31 PRO n 1 32 ASP n 1 33 ALA n 1 34 VAL n 1 35 VAL n 1 36 GLU n 1 37 ASP n 1 38 GLU n 1 39 GLY n 1 40 ALA n 1 41 ARG n 1 42 HIS n 1 43 GLN n 1 44 GLY n 1 45 VAL n 1 46 VAL n 1 47 ALA n 1 48 ILE n 1 49 LEU n 1 50 ARG n 1 51 TRP n 1 52 TRP n 1 53 VAL n 1 54 ALA n 1 55 ALA n 1 56 LYS n 1 57 LYS n 1 58 ALA n 1 59 ALA n 1 60 SER n 1 61 TYR n 1 62 VAL n 1 63 ALA n 1 64 GLU n 1 65 PRO n 1 66 LEU n 1 67 GLU n 1 68 SER n 1 69 THR n 1 70 VAL n 1 71 ASP n 1 72 GLY n 1 73 ASP n 1 74 LYS n 1 75 ALA n 1 76 LEU n 1 77 VAL n 1 78 ARG n 1 79 ALA n 1 80 LYS n 1 81 VAL n 1 82 SER n 1 83 GLY n 1 84 ARG n 1 85 PHE n 1 86 PRO n 1 87 GLY n 1 88 SER n 1 89 PRO n 1 90 VAL n 1 91 THR n 1 92 LEU n 1 93 THR n 1 94 TYR n 1 95 SER n 1 96 PHE n 1 97 THR n 1 98 ILE n 1 99 LYS n 1 100 ASP n 1 101 GLY n 1 102 ARG n 1 103 ILE n 1 104 ALA n 1 105 ARG n 1 106 LEU n 1 107 GLU n 1 108 ILE n 1 109 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 109 _entity_src_gen.gene_src_common_name 'Ensifer meliloti' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SMa1630 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sinorhizobium meliloti 1021' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 266834 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain RIL _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSGC-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q92YJ1_RHIME _struct_ref.pdbx_db_accession Q92YJ1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDEGARHQGVVAILRWWVAAKKAASYVAEPLESTVDGDKALVRAKVSG RFPGSPVTLTYSFTIKDGRIARLEIQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U13 A 4 ? 109 ? Q92YJ1 1 ? 106 ? 1 106 2 1 4U13 B 4 ? 109 ? Q92YJ1 1 ? 106 ? 1 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4U13 PHE A 1 ? UNP Q92YJ1 ? ? 'expression tag' -2 1 1 4U13 GLN A 2 ? UNP Q92YJ1 ? ? 'expression tag' -1 2 1 4U13 SER A 3 ? UNP Q92YJ1 ? ? 'expression tag' 0 3 2 4U13 PHE B 1 ? UNP Q92YJ1 ? ? 'expression tag' -2 4 2 4U13 GLN B 2 ? UNP Q92YJ1 ? ? 'expression tag' -1 5 2 4U13 SER B 3 ? UNP Q92YJ1 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U13 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details 'Rigaku Gallery 700' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 ul of 18 mg/ml protein in 20 mM HEPES pH 7.5, 150 mM NaCl, 10% Glycerol, 0.1% Sodium Azide and 0.5 mM TCEP were mixed with 0.2 ul of the MCSG condition #96 (0.2 M Lithium Sulfate, 0.1 M HEPES:NaOH pH 7.5, 25% (w/v) PEG 3350) and equilibrated against 1.5 M NaCl solution in 96 Well 3 drop Crystallization Plate (Swissci). Before crystallization protein was incubated with 1/50 v/v of 2 mg/ml chymotrypsin solution at 289 K for 3 hours. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Beryllium Lenses' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-11 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Diamond [111]' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 55 _reflns.entry_id 4U13 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10379 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.700 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.070 _reflns.pdbx_netI_over_av_sigmaI 20.149 _reflns.pdbx_netI_over_sigmaI 12.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.244 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 38669 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.300 2.340 ? 2.1 ? ? ? 480 ? 92.500 ? ? ? ? 0.674 ? ? ? ? ? ? ? ? 3.200 ? 0.917 ? ? ? ? 0 1 1 ? ? 2.340 2.380 ? ? ? ? ? 510 ? 97.100 ? ? ? ? 0.573 ? ? ? ? ? ? ? ? 3.200 ? 0.959 ? ? ? ? 0 2 1 ? ? 2.380 2.430 ? ? ? ? ? 495 ? 99.000 ? ? ? ? 0.618 ? ? ? ? ? ? ? ? 3.600 ? 0.849 ? ? ? ? 0 3 1 ? ? 2.430 2.480 ? ? ? ? ? 521 ? 99.800 ? ? ? ? 0.710 ? ? ? ? ? ? ? ? 3.800 ? 1.025 ? ? ? ? 0 4 1 ? ? 2.480 2.530 ? ? ? ? ? 507 ? 100.000 ? ? ? ? 0.632 ? ? ? ? ? ? ? ? 3.900 ? 0.929 ? ? ? ? 0 5 1 ? ? 2.530 2.590 ? ? ? ? ? 509 ? 100.000 ? ? ? ? 0.378 ? ? ? ? ? ? ? ? 4.000 ? 1.005 ? ? ? ? 0 6 1 ? ? 2.590 2.660 ? ? ? ? ? 543 ? 100.000 ? ? ? ? 0.357 ? ? ? ? ? ? ? ? 4.000 ? 1.146 ? ? ? ? 0 7 1 ? ? 2.660 2.730 ? ? ? ? ? 487 ? 100.000 ? ? ? ? 0.277 ? ? ? ? ? ? ? ? 4.000 ? 1.138 ? ? ? ? 0 8 1 ? ? 2.730 2.810 ? ? ? ? ? 550 ? 100.000 ? ? ? ? 0.260 ? ? ? ? ? ? ? ? 4.000 ? 1.429 ? ? ? ? 0 9 1 ? ? 2.810 2.900 ? ? ? ? ? 502 ? 100.000 ? ? ? ? 0.201 ? ? ? ? ? ? ? ? 4.000 ? 1.392 ? ? ? ? 0 10 1 ? ? 2.900 3.000 ? ? ? ? ? 539 ? 100.000 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 3.900 ? 1.417 ? ? ? ? 0 11 1 ? ? 3.000 3.120 ? ? ? ? ? 505 ? 100.000 ? ? ? ? 0.110 ? ? ? ? ? ? ? ? 3.900 ? 1.487 ? ? ? ? 0 12 1 ? ? 3.120 3.260 ? ? ? ? ? 523 ? 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 3.900 ? 1.369 ? ? ? ? 0 13 1 ? ? 3.260 3.440 ? ? ? ? ? 520 ? 99.800 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 3.800 ? 1.431 ? ? ? ? 0 14 1 ? ? 3.440 3.650 ? ? ? ? ? 523 ? 100.000 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 3.700 ? 1.551 ? ? ? ? 0 15 1 ? ? 3.650 3.930 ? ? ? ? ? 524 ? 99.800 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 3.800 ? 1.395 ? ? ? ? 0 16 1 ? ? 3.930 4.330 ? ? ? ? ? 524 ? 100.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 3.600 ? 1.326 ? ? ? ? 0 17 1 ? ? 4.330 4.950 ? ? ? ? ? 524 ? 99.800 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 3.600 ? 1.203 ? ? ? ? 0 18 1 ? ? 4.950 6.240 ? ? ? ? ? 546 ? 100.000 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 3.600 ? 1.408 ? ? ? ? 0 19 1 ? ? 6.240 50.000 ? ? ? ? ? 547 ? 98.600 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 3.300 ? 1.293 ? ? ? ? 0 20 1 ? ? # _refine.aniso_B[1][1] 2.6500 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 1.2000 _refine.aniso_B[2][2] -1.7200 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.4400 _refine.B_iso_max 160.470 _refine.B_iso_mean 65.0570 _refine.B_iso_min 43.150 _refine.correlation_coeff_Fo_to_Fc 0.9650 _refine.correlation_coeff_Fo_to_Fc_free 0.9510 _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U13 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 50.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10348 _refine.ls_number_reflns_R_free 535 _refine.ls_number_reflns_R_work 9813 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.8500 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1942 _refine.ls_R_factor_R_free 0.2238 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1926 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.2313 _refine.ls_wR_factor_R_work 0.2045 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3fh1 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.3260 _refine.pdbx_overall_ESU_R_Free 0.2160 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 18.3640 _refine.overall_SU_ML 0.1950 _refine.overall_SU_R_Cruickshank_DPI 0.3262 _refine.overall_SU_R_free 0.2160 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.7849 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 50.0000 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1656 _refine_hist.pdbx_number_residues_total 218 _refine_hist.pdbx_B_iso_mean_solvent 58.62 _refine_hist.pdbx_number_atoms_protein 1635 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.019 1670 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 1561 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.689 1.953 2276 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.992 3.000 3568 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.046 5.000 216 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.953 23.134 67 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.349 15.000 237 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.038 15.000 12 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.098 0.200 264 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.021 1902 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 378 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 2.652 3.484 870 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.648 3.482 869 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.021 5.208 1084 ? r_mcangle_it ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'X-RAY DIFFRACTION' 1 1 'interatomic distance' A 5738 0.060 0.050 ? ? ? 2 'X-RAY DIFFRACTION' 1 2 'interatomic distance' B 5738 0.060 0.050 ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.3000 _refine_ls_shell.d_res_low 2.3600 _refine_ls_shell.number_reflns_all 678 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_R_work 646 _refine_ls_shell.percent_reflns_obs 87.7100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3670 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 0 0 A -2 A 106 ? ? ? ? ? ? ? ? ? 1 2 0 0 B -2 B 106 ? ? ? ? ? ? ? ? ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4U13 _struct.title 'Crystal structure of putative polyketide cyclase (protein SMa1630) from Sinorhizobium meliloti at 2.3 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U13 _struct_keywords.text ;PSI-Biology, NYSGRC, putative polyketide cyclase, protein SMa1630, Structural Genomics, New York Structural Genomics Research Consortium, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.details 'biological unit is the same as asym.' _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.pdbx_formula_weight ? _struct_biol.pdbx_formula_weight_method ? _struct_biol.pdbx_aggregation_state ? _struct_biol.pdbx_assembly_method ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 2 ? LEU A 6 ? GLN A -1 LEU A 3 5 ? 5 HELX_P HELX_P2 AA2 PRO A 7 ? ASN A 20 ? PRO A 4 ASN A 17 1 ? 14 HELX_P HELX_P3 AA3 ASP A 21 ? GLU A 27 ? ASP A 18 GLU A 24 1 ? 7 HELX_P HELX_P4 AA4 GLY A 44 ? SER A 60 ? GLY A 41 SER A 57 1 ? 17 HELX_P HELX_P5 AA5 GLN B 2 ? LEU B 6 ? GLN B -1 LEU B 3 5 ? 5 HELX_P HELX_P6 AA6 PRO B 7 ? ASN B 20 ? PRO B 4 ASN B 17 1 ? 14 HELX_P HELX_P7 AA7 ASP B 21 ? GLU B 27 ? ASP B 18 GLU B 24 1 ? 7 HELX_P HELX_P8 AA8 GLY B 44 ? SER B 60 ? GLY B 41 SER B 57 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 B CYS 19 SG ? ? A CYS 16 B CYS 16 1_555 ? ? ? ? ? ? ? 2.140 ? ? covale1 covale both ? A SER 3 C ? ? ? 1_555 A MSE 4 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 4 C ? ? ? 1_555 A ASP 5 N ? ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale3 covale both ? A ASN 11 C ? ? ? 1_555 A MSE 12 N ? ? A ASN 8 A MSE 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 12 C ? ? ? 1_555 A TYR 13 N ? ? A MSE 9 A TYR 10 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? B SER 3 C ? ? ? 1_555 B MSE 4 N ? ? B SER 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? B MSE 4 C ? ? ? 1_555 B ASP 5 N ? ? B MSE 1 B ASP 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale7 covale both ? B ASN 11 C ? ? ? 1_555 B MSE 12 N ? ? B ASN 8 B MSE 9 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? B MSE 12 C ? ? ? 1_555 B TYR 13 N ? ? B MSE 9 B TYR 10 1_555 ? ? ? ? ? ? ? 1.325 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 88 A . ? SER 85 A PRO 89 A ? PRO 86 A 1 0.12 2 SER 88 B . ? SER 85 B PRO 89 B ? PRO 86 B 1 -2.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 40 ? GLN A 43 ? ALA A 37 GLN A 40 AA1 2 PHE A 29 ? ASP A 37 ? PHE A 26 ASP A 34 AA1 3 ARG A 102 ? GLN A 109 ? ARG A 99 GLN A 106 AA1 4 VAL A 90 ? LYS A 99 ? VAL A 87 LYS A 96 AA1 5 LYS A 74 ? SER A 82 ? LYS A 71 SER A 79 AA1 6 VAL A 62 ? ASP A 71 ? VAL A 59 ASP A 68 AA2 1 ALA B 40 ? GLN B 43 ? ALA B 37 GLN B 40 AA2 2 PHE B 29 ? ASP B 37 ? PHE B 26 ASP B 34 AA2 3 ARG B 102 ? GLN B 109 ? ARG B 99 GLN B 106 AA2 4 VAL B 90 ? LYS B 99 ? VAL B 87 LYS B 96 AA2 5 LYS B 74 ? SER B 82 ? LYS B 71 SER B 79 AA2 6 VAL B 62 ? ASP B 71 ? VAL B 59 ASP B 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O HIS A 42 ? O HIS A 39 N VAL A 35 ? N VAL A 32 AA1 2 3 N ALA A 30 ? N ALA A 27 O ILE A 103 ? O ILE A 100 AA1 3 4 O ALA A 104 ? O ALA A 101 N THR A 97 ? N THR A 94 AA1 4 5 O TYR A 94 ? O TYR A 91 N VAL A 77 ? N VAL A 74 AA1 5 6 O ARG A 78 ? O ARG A 75 N LEU A 66 ? N LEU A 63 AA2 1 2 O HIS B 42 ? O HIS B 39 N VAL B 35 ? N VAL B 32 AA2 2 3 N ALA B 30 ? N ALA B 27 O ILE B 103 ? O ILE B 100 AA2 3 4 O ALA B 104 ? O ALA B 101 N THR B 97 ? N THR B 94 AA2 4 5 O TYR B 94 ? O TYR B 91 N VAL B 77 ? N VAL B 74 AA2 5 6 O ARG B 78 ? O ARG B 75 N LEU B 66 ? N LEU B 63 # _atom_sites.entry_id 4U13 _atom_sites.fract_transf_matrix[1][1] 0.020936 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008388 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023643 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017295 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 -2 -2 PHE PHE A . n A 1 2 GLN 2 -1 -1 GLN GLN A . n A 1 3 SER 3 0 0 SER SER A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ASP 5 2 2 ASP ASP A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 ASN 11 8 8 ASN ASN A . n A 1 12 MSE 12 9 9 MSE MSE A . n A 1 13 TYR 13 10 10 TYR TYR A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 ASP 15 12 12 ASP ASP A . n A 1 16 ALA 16 13 13 ALA ALA A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 SER 18 15 15 SER SER A . n A 1 19 CYS 19 16 16 CYS CYS A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 ASP 21 18 18 ASP ASP A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 GLU 27 24 24 GLU GLU A . n A 1 28 THR 28 25 25 THR THR A . n A 1 29 PHE 29 26 26 PHE PHE A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 PRO 31 28 28 PRO PRO A . n A 1 32 ASP 32 29 29 ASP ASP A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 ASP 37 34 34 ASP ASP A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 ARG 41 38 38 ARG ARG A . n A 1 42 HIS 42 39 39 HIS HIS A . n A 1 43 GLN 43 40 40 GLN GLN A . n A 1 44 GLY 44 41 41 GLY GLY A . n A 1 45 VAL 45 42 42 VAL VAL A . n A 1 46 VAL 46 43 43 VAL VAL A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 TRP 51 48 48 TRP TRP A . n A 1 52 TRP 52 49 49 TRP TRP A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 ALA 54 51 51 ALA ALA A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 VAL 62 59 59 VAL VAL A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 PRO 65 62 62 PRO PRO A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 SER 68 65 65 SER SER A . n A 1 69 THR 69 66 66 THR THR A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 VAL 77 74 74 VAL VAL A . n A 1 78 ARG 78 75 75 ARG ARG A . n A 1 79 ALA 79 76 76 ALA ALA A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 SER 82 79 79 SER SER A . n A 1 83 GLY 83 80 80 GLY GLY A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 PHE 85 82 82 PHE PHE A . n A 1 86 PRO 86 83 83 PRO PRO A . n A 1 87 GLY 87 84 84 GLY GLY A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 TYR 94 91 91 TYR TYR A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 PHE 96 93 93 PHE PHE A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 ILE 98 95 95 ILE ILE A . n A 1 99 LYS 99 96 96 LYS LYS A . n A 1 100 ASP 100 97 97 ASP ASP A . n A 1 101 GLY 101 98 98 GLY GLY A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 ARG 105 102 102 ARG ARG A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 ILE 108 105 105 ILE ILE A . n A 1 109 GLN 109 106 106 GLN GLN A . n B 1 1 PHE 1 -2 -2 PHE PHE B . n B 1 2 GLN 2 -1 -1 GLN GLN B . n B 1 3 SER 3 0 0 SER SER B . n B 1 4 MSE 4 1 1 MSE MSE B . n B 1 5 ASP 5 2 2 ASP ASP B . n B 1 6 LEU 6 3 3 LEU LEU B . n B 1 7 PRO 7 4 4 PRO PRO B . n B 1 8 ASP 8 5 5 ASP ASP B . n B 1 9 ILE 9 6 6 ILE ILE B . n B 1 10 VAL 10 7 7 VAL VAL B . n B 1 11 ASN 11 8 8 ASN ASN B . n B 1 12 MSE 12 9 9 MSE MSE B . n B 1 13 TYR 13 10 10 TYR TYR B . n B 1 14 PHE 14 11 11 PHE PHE B . n B 1 15 ASP 15 12 12 ASP ASP B . n B 1 16 ALA 16 13 13 ALA ALA B . n B 1 17 ASP 17 14 14 ASP ASP B . n B 1 18 SER 18 15 15 SER SER B . n B 1 19 CYS 19 16 16 CYS CYS B . n B 1 20 ASN 20 17 17 ASN ASN B . n B 1 21 ASP 21 18 18 ASP ASP B . n B 1 22 THR 22 19 19 THR THR B . n B 1 23 ASP 23 20 20 ASP ASP B . n B 1 24 ALA 24 21 21 ALA ALA B . n B 1 25 LEU 25 22 22 LEU LEU B . n B 1 26 SER 26 23 23 SER SER B . n B 1 27 GLU 27 24 24 GLU GLU B . n B 1 28 THR 28 25 25 THR THR B . n B 1 29 PHE 29 26 26 PHE PHE B . n B 1 30 ALA 30 27 27 ALA ALA B . n B 1 31 PRO 31 28 28 PRO PRO B . n B 1 32 ASP 32 29 29 ASP ASP B . n B 1 33 ALA 33 30 30 ALA ALA B . n B 1 34 VAL 34 31 31 VAL VAL B . n B 1 35 VAL 35 32 32 VAL VAL B . n B 1 36 GLU 36 33 33 GLU GLU B . n B 1 37 ASP 37 34 34 ASP ASP B . n B 1 38 GLU 38 35 35 GLU GLU B . n B 1 39 GLY 39 36 36 GLY GLY B . n B 1 40 ALA 40 37 37 ALA ALA B . n B 1 41 ARG 41 38 38 ARG ARG B . n B 1 42 HIS 42 39 39 HIS HIS B . n B 1 43 GLN 43 40 40 GLN GLN B . n B 1 44 GLY 44 41 41 GLY GLY B . n B 1 45 VAL 45 42 42 VAL VAL B . n B 1 46 VAL 46 43 43 VAL VAL B . n B 1 47 ALA 47 44 44 ALA ALA B . n B 1 48 ILE 48 45 45 ILE ILE B . n B 1 49 LEU 49 46 46 LEU LEU B . n B 1 50 ARG 50 47 47 ARG ARG B . n B 1 51 TRP 51 48 48 TRP TRP B . n B 1 52 TRP 52 49 49 TRP TRP B . n B 1 53 VAL 53 50 50 VAL VAL B . n B 1 54 ALA 54 51 51 ALA ALA B . n B 1 55 ALA 55 52 52 ALA ALA B . n B 1 56 LYS 56 53 53 LYS LYS B . n B 1 57 LYS 57 54 54 LYS LYS B . n B 1 58 ALA 58 55 55 ALA ALA B . n B 1 59 ALA 59 56 56 ALA ALA B . n B 1 60 SER 60 57 57 SER SER B . n B 1 61 TYR 61 58 58 TYR TYR B . n B 1 62 VAL 62 59 59 VAL VAL B . n B 1 63 ALA 63 60 60 ALA ALA B . n B 1 64 GLU 64 61 61 GLU GLU B . n B 1 65 PRO 65 62 62 PRO PRO B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 GLU 67 64 64 GLU GLU B . n B 1 68 SER 68 65 65 SER SER B . n B 1 69 THR 69 66 66 THR THR B . n B 1 70 VAL 70 67 67 VAL VAL B . n B 1 71 ASP 71 68 68 ASP ASP B . n B 1 72 GLY 72 69 69 GLY GLY B . n B 1 73 ASP 73 70 70 ASP ASP B . n B 1 74 LYS 74 71 71 LYS LYS B . n B 1 75 ALA 75 72 72 ALA ALA B . n B 1 76 LEU 76 73 73 LEU LEU B . n B 1 77 VAL 77 74 74 VAL VAL B . n B 1 78 ARG 78 75 75 ARG ARG B . n B 1 79 ALA 79 76 76 ALA ALA B . n B 1 80 LYS 80 77 77 LYS LYS B . n B 1 81 VAL 81 78 78 VAL VAL B . n B 1 82 SER 82 79 79 SER SER B . n B 1 83 GLY 83 80 80 GLY GLY B . n B 1 84 ARG 84 81 81 ARG ARG B . n B 1 85 PHE 85 82 82 PHE PHE B . n B 1 86 PRO 86 83 83 PRO PRO B . n B 1 87 GLY 87 84 84 GLY GLY B . n B 1 88 SER 88 85 85 SER SER B . n B 1 89 PRO 89 86 86 PRO PRO B . n B 1 90 VAL 90 87 87 VAL VAL B . n B 1 91 THR 91 88 88 THR THR B . n B 1 92 LEU 92 89 89 LEU LEU B . n B 1 93 THR 93 90 90 THR THR B . n B 1 94 TYR 94 91 91 TYR TYR B . n B 1 95 SER 95 92 92 SER SER B . n B 1 96 PHE 96 93 93 PHE PHE B . n B 1 97 THR 97 94 94 THR THR B . n B 1 98 ILE 98 95 95 ILE ILE B . n B 1 99 LYS 99 96 96 LYS LYS B . n B 1 100 ASP 100 97 97 ASP ASP B . n B 1 101 GLY 101 98 98 GLY GLY B . n B 1 102 ARG 102 99 99 ARG ARG B . n B 1 103 ILE 103 100 100 ILE ILE B . n B 1 104 ALA 104 101 101 ALA ALA B . n B 1 105 ARG 105 102 102 ARG ARG B . n B 1 106 LEU 106 103 103 LEU LEU B . n B 1 107 GLU 107 104 104 GLU GLU B . n B 1 108 ILE 108 105 105 ILE ILE B . n B 1 109 GLN 109 106 106 GLN GLN B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 3 HOH HOH A . C 2 HOH 2 202 8 HOH HOH A . C 2 HOH 3 203 17 HOH HOH A . C 2 HOH 4 204 23 HOH HOH A . C 2 HOH 5 205 10 HOH HOH A . C 2 HOH 6 206 22 HOH HOH A . C 2 HOH 7 207 1 HOH HOH A . C 2 HOH 8 208 5 HOH HOH A . C 2 HOH 9 209 6 HOH HOH A . C 2 HOH 10 210 9 HOH HOH A . C 2 HOH 11 211 15 HOH HOH A . C 2 HOH 12 212 16 HOH HOH A . C 2 HOH 13 213 24 HOH HOH A . D 2 HOH 1 201 4 HOH HOH B . D 2 HOH 2 202 19 HOH HOH B . D 2 HOH 3 203 11 HOH HOH B . D 2 HOH 4 204 12 HOH HOH B . D 2 HOH 5 205 13 HOH HOH B . D 2 HOH 6 206 18 HOH HOH B . D 2 HOH 7 207 20 HOH HOH B . D 2 HOH 8 208 21 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET 'modified residue' 2 A MSE 12 A MSE 9 ? MET 'modified residue' 3 B MSE 4 B MSE 1 ? MET 'modified residue' 4 B MSE 12 B MSE 9 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 680 ? 1 MORE -4 ? 1 'SSA (A^2)' 11520 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-10 2 'Structure model' 1 1 2014-09-24 3 'Structure model' 1 2 2015-08-26 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' software 4 5 'Structure model' pdbx_audit_support 5 6 'Structure model' audit_author 6 6 'Structure model' citation_author 7 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_software.classification' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' 5 6 'Structure model' '_audit_author.identifier_ORCID' 6 6 'Structure model' '_citation_author.identifier_ORCID' 7 6 'Structure model' '_database_2.pdbx_DOI' 8 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 17.1060 24.2430 41.9560 0.4407 ? 0.1542 ? 0.1180 ? 0.1779 ? -0.0072 ? 0.3578 ? 8.3526 ? 1.5413 ? 6.7275 ? 4.3914 ? 1.5279 ? 20.6032 ? 0.3292 ? 0.0307 ? -1.0980 ? -0.3320 ? 0.2366 ? -0.4992 ? 0.5052 ? 0.1281 ? -0.5657 ? 2 'X-RAY DIFFRACTION' ? refined 15.7880 35.7260 53.8390 0.3383 ? 0.0583 ? 0.0434 ? 0.2680 ? 0.0207 ? 0.2113 ? 3.4296 ? 2.3460 ? 0.0979 ? 2.0074 ? 0.3272 ? 5.8543 ? 0.2254 ? -0.2394 ? -0.0937 ? 0.2158 ? -0.2352 ? 0.0850 ? -0.0979 ? 0.5049 ? 0.0097 ? 3 'X-RAY DIFFRACTION' ? refined 14.5030 36.9550 44.8470 0.3743 ? 0.0636 ? 0.0904 ? 0.2515 ? 0.0391 ? 0.2589 ? 1.3331 ? -0.2040 ? -0.4849 ? 0.7990 ? 0.6180 ? 2.8345 ? 0.1075 ? -0.0114 ? -0.0915 ? 0.1247 ? -0.0725 ? 0.0899 ? -0.0803 ? 0.3320 ? -0.0350 ? 4 'X-RAY DIFFRACTION' ? refined -0.7850 26.9580 36.7690 0.4557 ? 0.1485 ? 0.0161 ? 0.2406 ? 0.0645 ? 0.1979 ? 5.2724 ? 0.7522 ? -0.1755 ? 4.1318 ? 2.9648 ? 5.5656 ? 0.1226 ? 0.3926 ? 0.3315 ? -0.2433 ? -0.2317 ? -0.2597 ? -0.9969 ? -0.3526 ? 0.1092 ? 5 'X-RAY DIFFRACTION' ? refined -7.0140 17.5900 45.0850 0.3833 ? 0.0653 ? 0.0050 ? 0.2252 ? -0.0208 ? 0.1687 ? 2.8319 ? 0.2082 ? -1.6000 ? 4.2270 ? 0.7816 ? 4.0902 ? 0.2724 ? 0.0898 ? -0.1416 ? 0.0338 ? -0.4637 ? 0.1271 ? -0.0875 ? -0.3278 ? 0.1913 ? 6 'X-RAY DIFFRACTION' ? refined -2.2310 15.0240 39.3760 0.4207 ? 0.1050 ? 0.0362 ? 0.2453 ? -0.0273 ? 0.1967 ? 2.0232 ? -0.2751 ? -0.5658 ? 1.7524 ? 0.3747 ? 2.2557 ? 0.1800 ? 0.1300 ? -0.0093 ? -0.1962 ? -0.2632 ? -0.0208 ? -0.0735 ? -0.2492 ? 0.0833 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A -2 ? ? A 9 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? A 10 ? ? A 45 ? ? 3 'X-RAY DIFFRACTION' 3 ? ? A 46 ? ? A 106 ? ? 4 'X-RAY DIFFRACTION' 4 ? ? B -2 ? ? B 12 ? ? 5 'X-RAY DIFFRACTION' 5 ? ? B 13 ? ? B 37 ? ? 6 'X-RAY DIFFRACTION' 6 ? ? B 38 ? ? B 106 ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? ROSETTA-MR 5 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 7 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.14 8 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 9 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 97 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 72.37 _pdbx_validate_torsion.psi 47.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 29 ? CG ? A ASP 32 CG 2 1 Y 1 A ASP 29 ? OD1 ? A ASP 32 OD1 3 1 Y 1 A ASP 29 ? OD2 ? A ASP 32 OD2 4 1 Y 1 A GLU 33 ? CD ? A GLU 36 CD 5 1 Y 1 A GLU 33 ? OE1 ? A GLU 36 OE1 6 1 Y 1 A GLU 33 ? OE2 ? A GLU 36 OE2 7 1 Y 1 A ASP 68 ? CG ? A ASP 71 CG 8 1 Y 1 A ASP 68 ? OD1 ? A ASP 71 OD1 9 1 Y 1 A ASP 68 ? OD2 ? A ASP 71 OD2 10 1 Y 1 A ASP 70 ? CG ? A ASP 73 CG 11 1 Y 1 A ASP 70 ? OD1 ? A ASP 73 OD1 12 1 Y 1 A ASP 70 ? OD2 ? A ASP 73 OD2 13 1 Y 1 A LYS 71 ? CE ? A LYS 74 CE 14 1 Y 1 A LYS 71 ? NZ ? A LYS 74 NZ 15 1 Y 1 A LYS 96 ? CG ? A LYS 99 CG 16 1 Y 1 A LYS 96 ? CD ? A LYS 99 CD 17 1 Y 1 A LYS 96 ? CE ? A LYS 99 CE 18 1 Y 1 A LYS 96 ? NZ ? A LYS 99 NZ 19 1 Y 1 A GLU 104 ? CG ? A GLU 107 CG 20 1 Y 1 A GLU 104 ? CD ? A GLU 107 CD 21 1 Y 1 A GLU 104 ? OE1 ? A GLU 107 OE1 22 1 Y 1 A GLU 104 ? OE2 ? A GLU 107 OE2 23 1 Y 1 A GLN 106 ? CG ? A GLN 109 CG 24 1 Y 1 A GLN 106 ? CD ? A GLN 109 CD 25 1 Y 1 A GLN 106 ? OE1 ? A GLN 109 OE1 26 1 Y 1 A GLN 106 ? NE2 ? A GLN 109 NE2 27 1 Y 1 B GLU 24 ? CD ? B GLU 27 CD 28 1 Y 1 B GLU 24 ? OE1 ? B GLU 27 OE1 29 1 Y 1 B GLU 24 ? OE2 ? B GLU 27 OE2 30 1 Y 1 B ASP 29 ? CG ? B ASP 32 CG 31 1 Y 1 B ASP 29 ? OD1 ? B ASP 32 OD1 32 1 Y 1 B ASP 29 ? OD2 ? B ASP 32 OD2 33 1 Y 1 B GLU 33 ? CD ? B GLU 36 CD 34 1 Y 1 B GLU 33 ? OE1 ? B GLU 36 OE1 35 1 Y 1 B GLU 33 ? OE2 ? B GLU 36 OE2 36 1 Y 1 B ASP 68 ? CG ? B ASP 71 CG 37 1 Y 1 B ASP 68 ? OD1 ? B ASP 71 OD1 38 1 Y 1 B ASP 68 ? OD2 ? B ASP 71 OD2 39 1 Y 1 B ASP 70 ? CG ? B ASP 73 CG 40 1 Y 1 B ASP 70 ? OD1 ? B ASP 73 OD1 41 1 Y 1 B ASP 70 ? OD2 ? B ASP 73 OD2 42 1 Y 1 B LYS 96 ? CG ? B LYS 99 CG 43 1 Y 1 B LYS 96 ? CD ? B LYS 99 CD 44 1 Y 1 B LYS 96 ? CE ? B LYS 99 CE 45 1 Y 1 B LYS 96 ? NZ ? B LYS 99 NZ # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number NIH-5U54GM094662-04 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #