HEADER ISOMERASE 15-JUL-14 4U1A TITLE CRYSTAL STRUCTURE OF HUMAN PEROXISOMAL DELTA3,DELTA2, ENOYL-COA TITLE 2 ISOMERASE HELIX-10 DELETION MUTANT (ISOB-ECI2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA DELTA ISOMERASE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DRS-1,DELTA(3),DELTA(2)-ENOYL-COA ISOMERASE,D3,D2-ENOYL-COA COMPND 5 ISOMERASE,DIAZEPAM-BINDING INHIBITOR-RELATED PROTEIN 1,DBI-RELATED COMPND 6 PROTEIN 1,DODECENOYL-COA ISOMERASE,HEPATOCELLULAR CARCINOMA- COMPND 7 ASSOCIATED ANTIGEN 88,PEROXISOMAL 3,2-TRANS-ENOYL-COA ISOMERASE,PECI, COMPND 8 RENAL CARCINOMA ANTIGEN NY-REN-1; COMPND 9 EC: 5.3.3.8; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ECI2, DRS1, HCA88, PECI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PECI, CROTONASE, BETA-OXIDATION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.U.ONWUKWE,M.K.KOSKI,R.K.WIERENGA REVDAT 5 08-MAY-24 4U1A 1 REMARK REVDAT 4 25-FEB-15 4U1A 1 JRNL REVDAT 3 14-JAN-15 4U1A 1 JRNL REVDAT 2 31-DEC-14 4U1A 1 JRNL REVDAT 1 24-DEC-14 4U1A 0 JRNL AUTH G.U.ONWUKWE,P.KURSULA,M.K.KOSKI,W.SCHMITZ,R.K.WIERENGA JRNL TITL HUMAN DELTA (3) , DELTA (2) -ENOYL-COA ISOMERASE, TYPE 2: A JRNL TITL 2 STRUCTURAL ENZYMOLOGY STUDY ON THE CATALYTIC ROLE OF ITS JRNL TITL 3 ACBP DOMAIN AND HELIX-10. JRNL REF FEBS J. V. 282 746 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25515061 JRNL DOI 10.1111/FEBS.13179 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 21084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.98000 REMARK 3 B22 (A**2) : 7.79000 REMARK 3 B33 (A**2) : -4.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5825 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7880 ; 1.444 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.541 ;24.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1019 ;16.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.067 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 892 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4347 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2945 ; 3.426 ; 4.881 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3676 ; 5.541 ; 7.311 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2880 ; 5.132 ; 5.430 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8548 ;11.353 ;40.829 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 103 B 345 3 REMARK 3 1 A 103 A 345 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 907 ; 0.06 ; 5.00 REMARK 3 TIGHT THERMAL 1 B (A**2): 972 ; 6.69 ; 0.50 REMARK 3 LOOSE THERMAL 1 B (A**2): 907 ; 7.11 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 103 C 345 3 REMARK 3 1 A 103 A 345 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 C (A): 907 ; 0.07 ; 5.00 REMARK 3 TIGHT THERMAL 2 C (A**2): 972 ; 9.03 ; 0.50 REMARK 3 LOOSE THERMAL 2 C (A**2): 907 ; 8.85 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 34.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160MM CALCIUM ACETATE, 0.08M SODIUM REMARK 280 CACODYLATE PH 6.5, 14.4% PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.22000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 HIS A 83 REMARK 465 HIS A 84 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 SER A 87 REMARK 465 SER A 88 REMARK 465 GLY A 89 REMARK 465 VAL A 90 REMARK 465 ASP A 91 REMARK 465 LEU A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 GLU A 95 REMARK 465 ASN A 96 REMARK 465 LEU A 97 REMARK 465 TYR A 98 REMARK 465 PHE A 99 REMARK 465 GLN A 100 REMARK 465 SER A 101 REMARK 465 MET A 102 REMARK 465 THR A 346 REMARK 465 ASN A 347 REMARK 465 ALA A 348 REMARK 465 VAL A 349 REMARK 465 MET B 80 REMARK 465 HIS B 81 REMARK 465 HIS B 82 REMARK 465 HIS B 83 REMARK 465 HIS B 84 REMARK 465 HIS B 85 REMARK 465 HIS B 86 REMARK 465 SER B 87 REMARK 465 SER B 88 REMARK 465 GLY B 89 REMARK 465 VAL B 90 REMARK 465 ASP B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 THR B 94 REMARK 465 GLU B 95 REMARK 465 ASN B 96 REMARK 465 LEU B 97 REMARK 465 TYR B 98 REMARK 465 PHE B 99 REMARK 465 GLN B 100 REMARK 465 SER B 101 REMARK 465 THR B 346 REMARK 465 ASN B 347 REMARK 465 ALA B 348 REMARK 465 VAL B 349 REMARK 465 MET C 80 REMARK 465 HIS C 81 REMARK 465 HIS C 82 REMARK 465 HIS C 83 REMARK 465 HIS C 84 REMARK 465 HIS C 85 REMARK 465 HIS C 86 REMARK 465 SER C 87 REMARK 465 SER C 88 REMARK 465 GLY C 89 REMARK 465 VAL C 90 REMARK 465 ASP C 91 REMARK 465 LEU C 92 REMARK 465 GLY C 93 REMARK 465 THR C 94 REMARK 465 GLU C 95 REMARK 465 ASN C 96 REMARK 465 ASN C 347 REMARK 465 ALA C 348 REMARK 465 VAL C 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 154 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 122 57.36 -144.23 REMARK 500 ASP A 147 -162.46 -65.59 REMARK 500 ASP A 172 104.28 -57.66 REMARK 500 ASP A 229 0.98 -66.18 REMARK 500 SER A 257 139.00 86.25 REMARK 500 ARG B 122 57.07 -142.31 REMARK 500 ASP B 147 -159.34 -58.90 REMARK 500 SER B 162 146.25 -170.50 REMARK 500 ASN B 165 140.54 -36.94 REMARK 500 ASP B 172 106.23 -57.87 REMARK 500 PRO B 210 132.86 -35.97 REMARK 500 ASP B 229 1.96 -63.45 REMARK 500 SER B 257 138.73 94.68 REMARK 500 GLN C 100 -38.29 64.20 REMARK 500 ASP C 113 36.95 73.25 REMARK 500 ASP C 147 -159.01 -71.30 REMARK 500 ASP C 172 99.97 -58.35 REMARK 500 SER C 257 140.11 86.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 4U1A A 103 349 UNP O75521 ECI2_HUMAN 138 384 DBREF 4U1A B 103 349 UNP O75521 ECI2_HUMAN 138 384 DBREF 4U1A C 103 349 UNP O75521 ECI2_HUMAN 138 384 SEQADV 4U1A MET A 80 UNP O75521 INITIATING METHIONINE SEQADV 4U1A HIS A 81 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS A 82 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS A 83 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS A 84 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS A 85 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS A 86 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER A 87 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER A 88 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY A 89 UNP O75521 EXPRESSION TAG SEQADV 4U1A VAL A 90 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASP A 91 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU A 92 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY A 93 UNP O75521 EXPRESSION TAG SEQADV 4U1A THR A 94 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLU A 95 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASN A 96 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU A 97 UNP O75521 EXPRESSION TAG SEQADV 4U1A TYR A 98 UNP O75521 EXPRESSION TAG SEQADV 4U1A PHE A 99 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLN A 100 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER A 101 UNP O75521 EXPRESSION TAG SEQADV 4U1A MET A 102 UNP O75521 EXPRESSION TAG SEQADV 4U1A MET B 80 UNP O75521 INITIATING METHIONINE SEQADV 4U1A HIS B 81 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS B 82 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS B 83 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS B 84 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS B 85 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS B 86 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER B 87 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER B 88 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY B 89 UNP O75521 EXPRESSION TAG SEQADV 4U1A VAL B 90 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASP B 91 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU B 92 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY B 93 UNP O75521 EXPRESSION TAG SEQADV 4U1A THR B 94 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLU B 95 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASN B 96 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU B 97 UNP O75521 EXPRESSION TAG SEQADV 4U1A TYR B 98 UNP O75521 EXPRESSION TAG SEQADV 4U1A PHE B 99 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLN B 100 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER B 101 UNP O75521 EXPRESSION TAG SEQADV 4U1A MET B 102 UNP O75521 EXPRESSION TAG SEQADV 4U1A MET C 80 UNP O75521 INITIATING METHIONINE SEQADV 4U1A HIS C 81 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS C 82 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS C 83 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS C 84 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS C 85 UNP O75521 EXPRESSION TAG SEQADV 4U1A HIS C 86 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER C 87 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER C 88 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY C 89 UNP O75521 EXPRESSION TAG SEQADV 4U1A VAL C 90 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASP C 91 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU C 92 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLY C 93 UNP O75521 EXPRESSION TAG SEQADV 4U1A THR C 94 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLU C 95 UNP O75521 EXPRESSION TAG SEQADV 4U1A ASN C 96 UNP O75521 EXPRESSION TAG SEQADV 4U1A LEU C 97 UNP O75521 EXPRESSION TAG SEQADV 4U1A TYR C 98 UNP O75521 EXPRESSION TAG SEQADV 4U1A PHE C 99 UNP O75521 EXPRESSION TAG SEQADV 4U1A GLN C 100 UNP O75521 EXPRESSION TAG SEQADV 4U1A SER C 101 UNP O75521 EXPRESSION TAG SEQADV 4U1A MET C 102 UNP O75521 EXPRESSION TAG SEQRES 1 A 270 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 270 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY PHE GLU SEQRES 3 A 270 THR LEU VAL VAL THR SER GLU ASP GLY ILE THR LYS ILE SEQRES 4 A 270 MET PHE ASN ARG PRO LYS LYS LYS ASN ALA ILE ASN THR SEQRES 5 A 270 GLU MET TYR HIS GLU ILE MET ARG ALA LEU LYS ALA ALA SEQRES 6 A 270 SER LYS ASP ASP SER ILE ILE THR VAL LEU THR GLY ASN SEQRES 7 A 270 GLY ASP TYR TYR SER SER GLY ASN ASP LEU THR ASN PHE SEQRES 8 A 270 THR ASP ILE PRO PRO GLY GLY VAL GLU GLU LYS ALA LYS SEQRES 9 A 270 ASN ASN ALA VAL LEU LEU ARG GLU PHE VAL GLY CYS PHE SEQRES 10 A 270 ILE ASP PHE PRO LYS PRO LEU ILE ALA VAL VAL ASN GLY SEQRES 11 A 270 PRO ALA VAL GLY ILE SER VAL THR LEU LEU GLY LEU PHE SEQRES 12 A 270 ASP ALA VAL TYR ALA SER ASP ARG ALA THR PHE HIS THR SEQRES 13 A 270 PRO PHE SER HIS LEU GLY GLN SER PRO GLU GLY CYS SER SEQRES 14 A 270 SER TYR THR PHE PRO LYS ILE MET SER PRO ALA LYS ALA SEQRES 15 A 270 THR GLU MET LEU ILE PHE GLY LYS LYS LEU THR ALA GLY SEQRES 16 A 270 GLU ALA CYS ALA GLN GLY LEU VAL THR GLU VAL PHE PRO SEQRES 17 A 270 ASP SER THR PHE GLN LYS GLU VAL TRP THR ARG LEU LYS SEQRES 18 A 270 ALA PHE ALA LYS LEU PRO PRO ASN ALA LEU ARG ILE SER SEQRES 19 A 270 LYS GLU VAL ILE ARG LYS ARG GLU ARG GLU LYS LEU HIS SEQRES 20 A 270 ALA VAL ASN ALA GLU GLU CYS ASN VAL LEU GLN GLY ARG SEQRES 21 A 270 TRP LEU SER ASP GLU CYS THR ASN ALA VAL SEQRES 1 B 270 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 270 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY PHE GLU SEQRES 3 B 270 THR LEU VAL VAL THR SER GLU ASP GLY ILE THR LYS ILE SEQRES 4 B 270 MET PHE ASN ARG PRO LYS LYS LYS ASN ALA ILE ASN THR SEQRES 5 B 270 GLU MET TYR HIS GLU ILE MET ARG ALA LEU LYS ALA ALA SEQRES 6 B 270 SER LYS ASP ASP SER ILE ILE THR VAL LEU THR GLY ASN SEQRES 7 B 270 GLY ASP TYR TYR SER SER GLY ASN ASP LEU THR ASN PHE SEQRES 8 B 270 THR ASP ILE PRO PRO GLY GLY VAL GLU GLU LYS ALA LYS SEQRES 9 B 270 ASN ASN ALA VAL LEU LEU ARG GLU PHE VAL GLY CYS PHE SEQRES 10 B 270 ILE ASP PHE PRO LYS PRO LEU ILE ALA VAL VAL ASN GLY SEQRES 11 B 270 PRO ALA VAL GLY ILE SER VAL THR LEU LEU GLY LEU PHE SEQRES 12 B 270 ASP ALA VAL TYR ALA SER ASP ARG ALA THR PHE HIS THR SEQRES 13 B 270 PRO PHE SER HIS LEU GLY GLN SER PRO GLU GLY CYS SER SEQRES 14 B 270 SER TYR THR PHE PRO LYS ILE MET SER PRO ALA LYS ALA SEQRES 15 B 270 THR GLU MET LEU ILE PHE GLY LYS LYS LEU THR ALA GLY SEQRES 16 B 270 GLU ALA CYS ALA GLN GLY LEU VAL THR GLU VAL PHE PRO SEQRES 17 B 270 ASP SER THR PHE GLN LYS GLU VAL TRP THR ARG LEU LYS SEQRES 18 B 270 ALA PHE ALA LYS LEU PRO PRO ASN ALA LEU ARG ILE SER SEQRES 19 B 270 LYS GLU VAL ILE ARG LYS ARG GLU ARG GLU LYS LEU HIS SEQRES 20 B 270 ALA VAL ASN ALA GLU GLU CYS ASN VAL LEU GLN GLY ARG SEQRES 21 B 270 TRP LEU SER ASP GLU CYS THR ASN ALA VAL SEQRES 1 C 270 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 270 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY PHE GLU SEQRES 3 C 270 THR LEU VAL VAL THR SER GLU ASP GLY ILE THR LYS ILE SEQRES 4 C 270 MET PHE ASN ARG PRO LYS LYS LYS ASN ALA ILE ASN THR SEQRES 5 C 270 GLU MET TYR HIS GLU ILE MET ARG ALA LEU LYS ALA ALA SEQRES 6 C 270 SER LYS ASP ASP SER ILE ILE THR VAL LEU THR GLY ASN SEQRES 7 C 270 GLY ASP TYR TYR SER SER GLY ASN ASP LEU THR ASN PHE SEQRES 8 C 270 THR ASP ILE PRO PRO GLY GLY VAL GLU GLU LYS ALA LYS SEQRES 9 C 270 ASN ASN ALA VAL LEU LEU ARG GLU PHE VAL GLY CYS PHE SEQRES 10 C 270 ILE ASP PHE PRO LYS PRO LEU ILE ALA VAL VAL ASN GLY SEQRES 11 C 270 PRO ALA VAL GLY ILE SER VAL THR LEU LEU GLY LEU PHE SEQRES 12 C 270 ASP ALA VAL TYR ALA SER ASP ARG ALA THR PHE HIS THR SEQRES 13 C 270 PRO PHE SER HIS LEU GLY GLN SER PRO GLU GLY CYS SER SEQRES 14 C 270 SER TYR THR PHE PRO LYS ILE MET SER PRO ALA LYS ALA SEQRES 15 C 270 THR GLU MET LEU ILE PHE GLY LYS LYS LEU THR ALA GLY SEQRES 16 C 270 GLU ALA CYS ALA GLN GLY LEU VAL THR GLU VAL PHE PRO SEQRES 17 C 270 ASP SER THR PHE GLN LYS GLU VAL TRP THR ARG LEU LYS SEQRES 18 C 270 ALA PHE ALA LYS LEU PRO PRO ASN ALA LEU ARG ILE SER SEQRES 19 C 270 LYS GLU VAL ILE ARG LYS ARG GLU ARG GLU LYS LEU HIS SEQRES 20 C 270 ALA VAL ASN ALA GLU GLU CYS ASN VAL LEU GLN GLY ARG SEQRES 21 C 270 TRP LEU SER ASP GLU CYS THR ASN ALA VAL HET CL A 401 1 HET CL B 401 1 HET CL C 401 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *37(H2 O) HELIX 1 AA1 ARG A 122 LYS A 126 5 5 HELIX 2 AA2 ASN A 130 ASP A 147 1 18 HELIX 3 AA3 LEU A 167 ASP A 172 1 6 HELIX 4 AA4 GLY A 176 PHE A 199 1 24 HELIX 5 AA5 GLY A 213 LEU A 218 1 6 HELIX 6 AA6 LEU A 219 PHE A 222 5 4 HELIX 7 AA7 PHE A 237 GLY A 241 5 5 HELIX 8 AA8 CYS A 247 SER A 257 1 11 HELIX 9 AA9 SER A 257 ILE A 266 1 10 HELIX 10 AB1 ALA A 273 GLN A 279 1 7 HELIX 11 AB2 PRO A 287 SER A 289 5 3 HELIX 12 AB3 THR A 290 ALA A 303 1 14 HELIX 13 AB4 PRO A 306 LYS A 319 1 14 HELIX 14 AB5 GLU A 321 LEU A 341 1 21 HELIX 15 AB6 ARG B 122 LYS B 126 5 5 HELIX 16 AB7 ASN B 130 ASP B 147 1 18 HELIX 17 AB8 LEU B 167 ASP B 172 1 6 HELIX 18 AB9 GLY B 176 PHE B 199 1 24 HELIX 19 AC1 GLY B 213 LEU B 218 1 6 HELIX 20 AC2 LEU B 219 PHE B 222 5 4 HELIX 21 AC3 PHE B 237 GLY B 241 5 5 HELIX 22 AC4 CYS B 247 SER B 257 1 11 HELIX 23 AC5 SER B 257 ILE B 266 1 10 HELIX 24 AC6 ALA B 273 GLN B 279 1 7 HELIX 25 AC7 PRO B 287 LYS B 304 1 18 HELIX 26 AC8 PRO B 306 LYS B 319 1 14 HELIX 27 AC9 GLU B 321 LEU B 341 1 21 HELIX 28 AD1 ARG C 122 LYS C 126 5 5 HELIX 29 AD2 ASN C 130 ASP C 147 1 18 HELIX 30 AD3 LEU C 167 ASP C 172 1 6 HELIX 31 AD4 GLY C 176 PHE C 199 1 24 HELIX 32 AD5 GLY C 213 LEU C 218 1 6 HELIX 33 AD6 LEU C 219 PHE C 222 5 4 HELIX 34 AD7 PHE C 237 GLY C 241 5 5 HELIX 35 AD8 CYS C 247 SER C 257 1 11 HELIX 36 AD9 SER C 257 ILE C 266 1 10 HELIX 37 AE1 ALA C 273 GLN C 279 1 7 HELIX 38 AE2 PRO C 287 SER C 289 5 3 HELIX 39 AE3 THR C 290 LYS C 304 1 15 HELIX 40 AE4 PRO C 306 LYS C 319 1 14 HELIX 41 AE5 GLU C 321 LEU C 341 1 21 SHEET 1 AA1 6 LEU A 107 GLU A 112 0 SHEET 2 AA1 6 ILE A 115 PHE A 120 -1 O LYS A 117 N THR A 110 SHEET 3 AA1 6 ILE A 151 GLY A 156 1 O VAL A 153 N ILE A 118 SHEET 4 AA1 6 LEU A 203 VAL A 207 1 O ILE A 204 N THR A 152 SHEET 5 AA1 6 ALA A 224 SER A 228 1 O TYR A 226 N VAL A 207 SHEET 6 AA1 6 GLU A 284 PHE A 286 1 O GLU A 284 N ALA A 227 SHEET 1 AA2 3 ALA A 211 VAL A 212 0 SHEET 2 AA2 3 THR A 232 HIS A 234 1 O THR A 232 N ALA A 211 SHEET 3 AA2 3 LEU A 271 THR A 272 -1 O LEU A 271 N PHE A 233 SHEET 1 AA3 6 LEU B 107 GLU B 112 0 SHEET 2 AA3 6 ILE B 115 PHE B 120 -1 O LYS B 117 N THR B 110 SHEET 3 AA3 6 ILE B 151 GLY B 156 1 O VAL B 153 N ILE B 118 SHEET 4 AA3 6 LEU B 203 VAL B 207 1 O ILE B 204 N THR B 152 SHEET 5 AA3 6 ALA B 224 SER B 228 1 O TYR B 226 N VAL B 207 SHEET 6 AA3 6 GLU B 284 PHE B 286 1 O GLU B 284 N ALA B 227 SHEET 1 AA4 3 ALA B 211 VAL B 212 0 SHEET 2 AA4 3 THR B 232 HIS B 234 1 O THR B 232 N ALA B 211 SHEET 3 AA4 3 LEU B 271 THR B 272 -1 O LEU B 271 N PHE B 233 SHEET 1 AA5 7 SER C 101 MET C 102 0 SHEET 2 AA5 7 LEU C 107 GLU C 112 -1 O VAL C 109 N MET C 102 SHEET 3 AA5 7 ILE C 115 PHE C 120 -1 O LYS C 117 N THR C 110 SHEET 4 AA5 7 ILE C 151 GLY C 156 1 O VAL C 153 N ILE C 118 SHEET 5 AA5 7 LEU C 203 VAL C 207 1 O ILE C 204 N THR C 152 SHEET 6 AA5 7 ALA C 224 SER C 228 1 O TYR C 226 N ALA C 205 SHEET 7 AA5 7 GLU C 284 PHE C 286 1 O GLU C 284 N ALA C 227 SHEET 1 AA6 3 ALA C 211 VAL C 212 0 SHEET 2 AA6 3 THR C 232 HIS C 234 1 O THR C 232 N ALA C 211 SHEET 3 AA6 3 LEU C 271 THR C 272 -1 O LEU C 271 N PHE C 233 CISPEP 1 MET B 102 GLY B 103 0 -24.78 CRYST1 74.440 95.340 129.970 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007694 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.453322 0.349164 0.820112 1.29084 1 MTRIX2 2 0.147829 0.936791 -0.317127 -0.34119 1 MTRIX3 2 -0.879003 -0.022524 -0.476285 0.81064 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 -0.465263 0.118329 -0.877228 1.07551 1 MTRIX2 4 0.330104 0.942728 -0.047916 -0.57989 1 MTRIX3 4 0.821317 -0.311870 -0.477677 -0.79676 1